Wall clock time and date at job start Wed Apr 1 2020 03:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47638 * 2 1 4 4 C 1.35999 * 117.00345 * 179.97438 * 3 2 1 5 5 C 1.38666 * 120.11937 * 359.72969 * 4 3 2 6 6 C 1.38517 * 120.57992 * 179.77836 * 5 4 3 7 7 C 1.37961 * 120.39218 * 0.46296 * 6 5 4 8 8 C 1.39509 * 119.60853 * 359.79455 * 7 6 5 9 9 C 1.38769 * 120.12217 * 180.02562 * 4 3 2 10 10 O 1.35656 * 121.31334 * 359.97438 * 9 4 3 11 11 C 1.42813 * 117.28031 * 146.11376 * 10 9 4 12 12 C 1.50657 * 110.46705 * 48.27892 * 11 10 9 13 13 C 1.46238 * 120.14268 * 148.50864 * 12 11 10 14 14 O 1.21720 * 120.00132 * 186.08512 * 13 12 11 15 15 N 1.34782 * 120.00277 * 6.08061 * 13 12 11 16 16 C 1.47065 * 136.05936 * 184.94211 * 15 13 12 17 17 C 1.53240 * 88.08335 * 207.20690 * 16 15 13 18 18 O 1.42902 * 114.01627 * 87.71706 * 17 16 15 19 19 C 1.50701 * 114.32450 * 220.47141 * 17 16 15 20 20 H 1.07999 * 119.99727 * 93.76586 * 19 17 16 21 21 C 1.37876 * 120.00067 * 273.75566 * 19 17 16 22 22 N 1.31516 * 119.99837 * 0.02562 * 21 19 17 23 23 Si 1.86798 * 120.00104 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47214 * 60.00282 * 23 21 19 25 25 H 1.48496 * 109.47452 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47157 * 300.00360 * 23 21 19 27 27 C 1.47072 * 136.05392 * 5.31971 * 15 13 12 28 28 C 1.35576 * 119.71252 * 328.53465 * 12 11 10 29 29 H 1.09003 * 109.47104 * 59.99301 * 1 2 3 30 30 H 1.08993 * 109.47407 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46870 * 300.00347 * 1 2 3 32 32 H 1.09001 * 109.47569 * 120.00445 * 2 1 3 33 33 H 1.09005 * 109.46999 * 240.00414 * 2 1 3 34 34 H 1.08009 * 119.70950 * 359.97438 * 5 4 3 35 35 H 1.08001 * 119.80822 * 180.22798 * 6 5 4 36 36 H 1.07997 * 120.19640 * 179.82165 * 7 6 5 37 37 H 1.08998 * 109.29841 * 287.97697 * 11 10 9 38 38 H 1.09000 * 109.14158 * 168.48595 * 11 10 9 39 39 H 1.08999 * 113.47033 * 321.94253 * 16 15 13 40 40 H 1.09005 * 113.46470 * 92.38361 * 16 15 13 41 41 H 0.96706 * 113.99902 * 86.38797 * 18 17 16 42 42 H 0.97003 * 119.99737 * 179.97438 * 22 21 19 43 43 H 1.08995 * 113.46452 * 267.62228 * 27 15 13 44 44 H 1.09002 * 113.46485 * 38.06168 * 27 15 13 45 45 H 1.07993 * 121.05910 * 180.88478 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3547 1.5254 0.0005 5 6 4.2017 0.4275 0.0067 6 6 5.5763 0.5978 0.0027 7 6 6.1226 1.8647 0.0021 8 6 5.2818 2.9779 0.0012 9 6 3.8879 2.8066 0.0011 10 8 3.0888 3.9028 0.0006 11 6 3.5541 5.0523 0.7088 12 6 4.9815 5.3584 0.3365 13 6 5.4596 6.7404 0.3342 14 8 6.5779 6.9968 -0.0725 15 7 4.6621 7.7302 0.7822 16 6 4.7348 9.1972 0.8561 17 6 3.7983 9.1312 2.0673 18 8 4.4732 8.9633 3.3157 19 6 2.7442 10.2078 2.0964 20 1 1.7656 10.0166 1.6815 21 6 3.0291 11.4368 2.6527 22 7 4.2210 11.6696 3.1576 23 14 1.7223 12.7710 2.6894 24 1 0.5472 12.2919 3.4606 25 1 2.2756 13.9884 3.3349 26 1 1.3051 13.0936 1.3011 27 6 3.3391 7.8181 1.4185 28 6 5.8206 4.3470 0.0031 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 3.7858 -0.5694 0.0115 35 1 6.2244 -0.2661 0.0039 36 1 7.1948 1.9939 0.0019 37 1 3.4938 4.8639 1.7807 38 1 2.9250 5.9061 0.4571 39 1 5.7296 9.5710 1.0983 40 1 4.2943 9.6976 -0.0063 41 1 4.7611 9.7924 3.7218 42 1 4.4215 12.5344 3.5486 43 1 2.5232 7.9473 0.7074 44 1 3.1497 7.0214 2.1380 45 1 6.8516 4.5402 -0.2536 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619443937.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:51 Heat of formation + Delta-G solvation = -88.840629 kcal Electronic energy + Delta-G solvation = -29894.360301 eV Core-core repulsion = 25650.846735 eV Total energy + Delta-G solvation = -4243.513566 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.16063 -41.33714 -40.01395 -39.14968 -38.00297 -35.98181 -35.00172 -34.14135 -32.68790 -32.08844 -30.48439 -30.17085 -27.68014 -27.42017 -26.46660 -25.42291 -24.00389 -23.37038 -22.17704 -20.80070 -19.77263 -19.45544 -19.19405 -18.47116 -17.95986 -17.70645 -17.16752 -17.05265 -16.65242 -16.48769 -16.20951 -16.06352 -15.80111 -15.39996 -15.08604 -14.97384 -14.48832 -14.42736 -14.22678 -14.11478 -13.79394 -13.45425 -13.38149 -13.25903 -13.11835 -12.93880 -12.78968 -12.75171 -12.70209 -12.24112 -12.20762 -12.07325 -11.97073 -11.72582 -11.46665 -11.11912 -10.95270 -10.66139 -10.32686 -9.73989 -9.22819 -8.98644 -8.28548 -6.46757 -0.74460 0.31643 0.72754 1.49111 1.49816 1.58135 1.82817 1.93572 2.16207 2.26473 2.39921 2.69069 2.93429 3.21156 3.36850 3.62531 3.68640 3.87063 3.90660 3.99875 4.09579 4.10662 4.16085 4.20368 4.22874 4.33451 4.40967 4.42809 4.48802 4.53267 4.66221 4.76180 4.81572 4.87697 4.90917 4.96767 5.03928 5.14564 5.19867 5.27250 5.30033 5.40711 5.63776 5.71486 5.86491 5.97052 6.51367 6.60552 6.73524 6.97379 7.27372 7.43479 8.77643 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015621 B = 0.002571 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.073623 B =10888.682007 C =12296.716678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.043 3.957 3 O -0.331 6.331 4 C 0.093 3.907 5 C -0.159 4.159 6 C -0.099 4.099 7 C -0.096 4.096 8 C -0.126 4.126 9 C 0.073 3.927 10 O -0.312 6.312 11 C 0.111 3.889 12 C -0.230 4.230 13 C 0.576 3.424 14 O -0.596 6.596 15 N -0.632 5.632 16 C 0.080 3.920 17 C 0.221 3.779 18 O -0.585 6.585 19 C -0.550 4.550 20 H 0.084 0.916 21 C 0.027 3.973 22 N -0.922 5.922 23 Si 0.974 3.026 24 H -0.268 1.268 25 H -0.287 1.287 26 H -0.268 1.268 27 C 0.105 3.895 28 C 0.001 3.999 29 H 0.057 0.943 30 H 0.104 0.896 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.169 0.831 35 H 0.172 0.828 36 H 0.157 0.843 37 H 0.078 0.922 38 H 0.125 0.875 39 H 0.037 0.963 40 H 0.090 0.910 41 H 0.389 0.611 42 H 0.276 0.724 43 H 0.118 0.882 44 H 0.084 0.916 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.043 -25.434 -5.456 26.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.031 4.031 3 O -0.246 6.246 4 C 0.047 3.953 5 C -0.177 4.177 6 C -0.117 4.117 7 C -0.114 4.114 8 C -0.127 4.127 9 C 0.027 3.973 10 O -0.226 6.226 11 C 0.037 3.963 12 C -0.233 4.233 13 C 0.369 3.631 14 O -0.481 6.481 15 N -0.364 5.364 16 C -0.043 4.043 17 C 0.180 3.820 18 O -0.397 6.397 19 C -0.588 4.588 20 H 0.102 0.898 21 C -0.174 4.174 22 N -0.563 5.563 23 Si 0.799 3.201 24 H -0.193 1.193 25 H -0.212 1.212 26 H -0.193 1.193 27 C -0.016 4.016 28 C -0.019 4.019 29 H 0.076 0.924 30 H 0.123 0.877 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.187 0.813 35 H 0.190 0.810 36 H 0.175 0.825 37 H 0.095 0.905 38 H 0.143 0.857 39 H 0.055 0.945 40 H 0.108 0.892 41 H 0.245 0.755 42 H 0.086 0.914 43 H 0.136 0.864 44 H 0.103 0.897 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.722 -25.765 -5.840 26.680 hybrid contribution 0.211 1.973 0.231 1.997 sum -3.511 -23.792 -5.609 24.696 Atomic orbital electron populations 1.21813 0.92004 1.04179 1.02861 1.23148 0.96709 0.80491 1.02767 1.86186 1.17852 1.31638 1.88893 1.18497 0.84056 0.91193 1.01565 1.21658 0.94189 0.97999 1.03852 1.21331 0.94351 0.97762 0.98277 1.21396 1.00610 0.90776 0.98597 1.19037 0.91612 0.93993 1.08017 1.18777 0.89068 0.85891 1.03534 1.86053 1.44706 1.20249 1.71610 1.21932 0.91171 0.86989 0.96241 1.22355 0.98253 0.92537 1.10175 1.17711 0.83818 0.84794 0.76728 1.90726 1.21028 1.84721 1.51608 1.49641 1.20355 1.07892 1.58471 1.24055 1.00527 0.78247 1.01487 1.19770 0.89060 0.92208 0.80966 1.85999 1.78269 1.38682 1.36797 1.21674 0.99583 0.97063 1.40465 0.89768 1.25880 0.97508 1.00701 0.93264 1.69356 1.21884 1.25332 1.39742 0.85346 0.78699 0.77339 0.78713 1.19250 1.21207 1.19263 1.23598 0.84671 0.98271 0.95082 1.22487 0.99200 0.89982 0.90237 0.92361 0.87701 0.92368 0.90383 0.90377 0.81337 0.81028 0.82524 0.90460 0.85730 0.94460 0.89216 0.75547 0.91438 0.86433 0.89731 0.82928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 10.28 71.98 0.74 -0.94 16 2 C 0.04 0.56 5.46 71.98 0.39 0.95 16 3 O -0.33 -7.76 9.97 -80.84 -0.81 -8.57 16 4 C 0.09 2.19 6.69 22.50 0.15 2.34 16 5 C -0.16 -2.44 9.04 22.44 0.20 -2.24 16 6 C -0.10 -1.35 10.02 22.27 0.22 -1.12 16 7 C -0.10 -1.77 9.85 22.51 0.22 -1.54 16 8 C -0.13 -3.34 5.80 -20.10 -0.12 -3.45 16 9 C 0.07 2.11 6.48 22.93 0.15 2.25 16 10 O -0.31 -10.23 10.22 -77.02 -0.79 -11.02 16 11 C 0.11 3.56 5.45 71.22 0.39 3.95 16 12 C -0.23 -8.23 5.96 -18.41 -0.11 -8.33 16 13 C 0.58 25.16 7.96 86.32 0.69 25.85 16 14 O -0.60 -29.63 17.09 -4.41 -0.08 -29.71 16 15 N -0.63 -27.66 3.66 -864.47 -3.16 -30.83 16 16 C 0.08 3.82 8.02 83.10 0.67 4.48 16 17 C 0.22 10.67 1.57 -11.29 -0.02 10.65 16 18 O -0.58 -30.90 13.53 -148.98 -2.02 -32.92 16 19 C -0.55 -27.03 8.69 25.60 0.22 -26.81 16 20 H 0.08 3.86 7.81 -2.91 -0.02 3.84 16 21 C 0.03 1.32 5.40 84.65 0.46 1.78 16 22 N -0.92 -48.17 11.01 21.45 0.24 -47.93 16 23 Si 0.97 39.41 29.54 68.60 2.03 41.44 16 24 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 25 H -0.29 -11.58 7.11 99.48 0.71 -10.88 16 26 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 27 C 0.11 4.17 5.38 83.18 0.45 4.61 16 28 C 0.00 0.02 9.61 23.99 0.23 0.25 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.08 0.73 7.65 -2.39 -0.02 0.71 16 33 H 0.08 0.72 7.68 -2.38 -0.02 0.70 16 34 H 0.17 1.37 6.28 -2.91 -0.02 1.36 16 35 H 0.17 0.97 8.06 -2.91 -0.02 0.95 16 36 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16 37 H 0.08 2.36 7.91 -2.39 -0.02 2.34 16 38 H 0.13 3.84 5.45 -2.39 -0.01 3.82 16 39 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.09 4.05 8.10 -2.38 -0.02 4.03 16 41 H 0.39 21.26 6.33 -74.05 -0.47 20.79 16 42 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 43 H 0.12 4.01 7.90 -2.39 -0.02 3.99 16 44 H 0.08 3.10 6.86 -2.39 -0.02 3.08 16 45 H 0.15 4.54 7.62 -2.91 -0.02 4.51 16 Total: -1.00 -69.20 374.59 0.92 -68.28 By element: Atomic # 1 Polarization: 38.01 SS G_CDS: 0.57 Total: 38.58 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: 4.93 Total: 12.68 kcal Atomic # 7 Polarization: -75.83 SS G_CDS: -2.93 Total: -78.76 kcal Atomic # 8 Polarization: -78.52 SS G_CDS: -3.68 Total: -82.20 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 2.03 Total: 41.44 kcal Total: -69.20 0.92 -68.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619443937.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.564 kcal (2) G-P(sol) polarization free energy of solvation -69.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds