Wall clock time and date at job start Wed Apr 1 2020 03:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46976 * 2 1 4 4 O 1.42902 * 109.47314 * 239.99971 * 2 1 3 5 5 C 1.34928 * 117.00011 * 89.99932 * 4 2 1 6 6 O 1.21666 * 119.99765 * 0.02562 * 5 4 2 7 7 C 1.41547 * 119.99912 * 180.02562 * 5 4 2 8 8 C 1.33871 * 125.97563 * 179.97438 * 7 5 4 9 9 O 1.33754 * 114.14279 * 180.02562 * 8 7 5 10 10 C 1.45600 * 110.38201 * 359.97438 * 9 8 7 11 11 C 1.51766 * 125.94683 * 359.90998 * 7 5 4 12 12 C 1.50698 * 109.47261 * 119.99734 * 2 1 3 13 13 O 1.21285 * 120.00011 * 109.84112 * 12 2 1 14 14 N 1.34773 * 120.00288 * 289.84362 * 12 2 1 15 15 C 1.46506 * 119.99963 * 5.37144 * 14 12 2 16 16 C 1.50705 * 109.47216 * 93.21941 * 15 14 12 17 17 H 1.07999 * 119.99516 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00157 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99784 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 120.00283 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47207 * 89.99806 * 20 18 16 22 22 H 1.48495 * 109.47331 * 209.99991 * 20 18 16 23 23 H 1.48503 * 109.46943 * 329.99807 * 20 18 16 24 24 C 1.39928 * 120.00286 * 185.36976 * 14 12 2 25 25 C 1.38874 * 120.07019 * 187.28108 * 24 14 12 26 26 C 1.38109 * 119.92692 * 179.78900 * 25 24 14 27 27 C 1.38279 * 120.07182 * 0.49260 * 26 25 24 28 28 C 1.38278 * 120.14019 * 359.73628 * 27 26 25 29 29 C 1.38108 * 120.07275 * 0.03080 * 28 27 26 30 30 H 1.09004 * 109.47109 * 307.76735 * 1 2 3 31 31 H 1.08996 * 109.47256 * 67.77366 * 1 2 3 32 32 H 1.08997 * 109.46615 * 187.77151 * 1 2 3 33 33 H 1.08000 * 122.92755 * 359.97438 * 8 7 5 34 34 H 1.09002 * 110.49479 * 118.66406 * 10 9 8 35 35 H 1.09002 * 110.49986 * 241.20314 * 10 9 8 36 36 H 1.09003 * 110.70374 * 61.57012 * 11 7 5 37 37 H 1.09003 * 110.75818 * 298.35874 * 11 7 5 38 38 H 1.08994 * 109.47263 * 213.21941 * 15 14 12 39 39 H 1.08999 * 109.47147 * 333.22157 * 15 14 12 40 40 H 0.96996 * 119.99452 * 179.97438 * 19 18 16 41 41 H 1.08006 * 120.03519 * 0.02800 * 25 24 14 42 42 H 1.08007 * 119.96682 * 180.23142 * 26 25 24 43 43 H 1.08000 * 119.93135 * 179.72248 * 27 26 25 44 44 H 1.08004 * 119.96423 * 180.02562 * 28 27 26 45 45 H 1.08000 * 120.03927 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2106 0.0787 -2.2680 6 8 1.9901 1.2748 -2.2370 7 6 2.6813 -0.5236 -3.4594 8 6 2.9237 0.1054 -4.6160 9 8 3.3633 -0.6957 -5.5927 10 6 3.4609 -2.0684 -5.1173 11 6 3.0005 -1.9953 -3.6477 12 6 2.0324 -0.7103 1.2305 13 8 2.5706 -1.7924 1.1287 14 7 1.8835 -0.1433 2.4440 15 6 1.1304 1.1059 2.5814 16 6 -0.3073 0.7926 2.9072 17 1 -0.6278 -0.2343 3.0027 18 6 -1.2133 1.8168 3.0832 19 7 -0.8228 3.0673 2.9673 20 14 -2.9951 1.4285 3.4877 21 1 -3.1643 1.3587 4.9614 22 1 -3.8710 2.4946 2.9388 23 1 -3.3665 0.1233 2.8844 24 6 2.4481 -0.7475 3.5727 25 6 2.1710 -0.2511 4.8397 26 6 2.7264 -0.8525 5.9521 27 6 3.5658 -1.9414 5.8045 28 6 3.8474 -2.4352 4.5440 29 6 3.2914 -1.8413 3.4279 30 1 -0.3633 0.6294 0.8124 31 1 -0.3633 0.3887 -0.9513 32 1 -0.3632 -1.0182 0.1390 33 1 2.7762 1.1670 -4.7491 34 1 2.8011 -2.7189 -5.6915 35 1 4.4905 -2.4211 -5.1779 36 1 2.1108 -2.6055 -3.4926 37 1 3.8025 -2.3054 -2.9778 38 1 1.5625 1.7043 3.3834 39 1 1.1777 1.6635 1.6460 40 1 -1.4603 3.7878 3.0908 41 1 1.5187 0.6020 4.9554 42 1 2.5083 -0.4692 6.9380 43 1 4.0024 -2.4072 6.6756 44 1 4.5031 -3.2861 4.4320 45 1 3.5121 -2.2271 2.4436 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734193626.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:20 Heat of formation + Delta-G solvation = -88.027023 kcal Electronic energy + Delta-G solvation = -30505.568529 eV Core-core repulsion = 26262.090244 eV Total energy + Delta-G solvation = -4243.478285 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.30872 -40.59295 -39.69799 -37.84089 -36.24854 -35.45169 -33.25290 -32.84689 -31.54053 -30.33052 -30.15581 -28.98189 -27.51692 -25.06309 -23.74222 -23.45614 -23.01626 -22.05599 -21.24042 -20.01122 -19.16436 -18.29515 -17.10129 -16.81031 -16.62867 -16.58151 -16.50841 -15.87487 -15.66599 -15.33399 -14.75081 -14.47977 -14.32247 -13.76695 -13.69383 -13.24157 -13.18956 -13.02513 -12.86965 -12.75452 -12.38099 -12.29552 -12.20795 -12.16756 -11.87830 -11.84065 -11.64774 -11.20496 -11.06617 -10.90223 -10.77071 -10.60345 -10.40534 -10.34557 -10.28181 -10.11380 -9.26799 -8.81480 -8.72834 -8.64157 -8.35908 -7.25941 -6.34314 -4.42371 1.01244 1.81574 1.98483 2.66751 2.94365 3.04638 3.09429 3.16021 3.24231 3.28210 3.75953 4.20410 4.26717 4.46312 4.47900 4.66492 4.84271 4.87622 4.97479 5.18369 5.24203 5.40371 5.44016 5.50354 5.52572 5.58961 5.69038 5.75163 5.80083 6.03601 6.12274 6.12992 6.21937 6.28765 6.49264 6.56608 6.68548 6.73284 6.84486 6.96636 7.01219 7.08845 7.10594 7.24560 7.58697 7.74697 7.79926 7.95127 8.01963 8.55201 8.68680 9.23243 10.71190 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009493 B = 0.003688 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2948.692465 B = 7589.672458 C = 9917.149489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.083 3.917 3 H 0.109 0.891 4 O -0.326 6.326 5 C 0.536 3.464 6 O -0.519 6.519 7 C -0.313 4.313 8 C 0.168 3.832 9 O -0.297 6.297 10 C 0.041 3.959 11 C -0.101 4.101 12 C 0.524 3.476 13 O -0.525 6.525 14 N -0.530 5.530 15 C 0.221 3.779 16 C -0.542 4.542 17 H 0.067 0.933 18 C 0.070 3.930 19 N -0.881 5.881 20 Si 0.897 3.103 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.270 1.270 24 C 0.171 3.829 25 C -0.141 4.141 26 C -0.105 4.105 27 C -0.160 4.160 28 C -0.109 4.109 29 C -0.175 4.175 30 H 0.138 0.862 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.199 0.801 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.048 0.952 39 H 0.050 0.950 40 H 0.269 0.731 41 H 0.141 0.859 42 H 0.118 0.882 43 H 0.111 0.889 44 H 0.114 0.886 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.621 -7.327 -9.454 14.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.024 3.976 3 H 0.126 0.874 4 O -0.242 6.242 5 C 0.385 3.615 6 O -0.411 6.411 7 C -0.316 4.316 8 C 0.100 3.900 9 O -0.207 6.207 10 C -0.033 4.033 11 C -0.138 4.138 12 C 0.313 3.687 13 O -0.404 6.404 14 N -0.250 5.250 15 C 0.102 3.898 16 C -0.580 4.580 17 H 0.086 0.914 18 C -0.135 4.135 19 N -0.518 5.518 20 Si 0.724 3.276 21 H -0.203 1.203 22 H -0.209 1.209 23 H -0.195 1.195 24 C 0.075 3.925 25 C -0.161 4.161 26 C -0.124 4.124 27 C -0.179 4.179 28 C -0.128 4.128 29 C -0.194 4.194 30 H 0.156 0.844 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.215 0.785 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.159 0.841 42 H 0.136 0.864 43 H 0.129 0.871 44 H 0.132 0.868 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 7.787 -7.276 -9.799 14.478 hybrid contribution -1.217 -0.008 0.663 1.385 sum 6.570 -7.284 -9.137 13.406 Atomic orbital electron populations 1.22709 0.90649 1.04790 1.06019 1.22058 0.97237 0.96944 0.81336 0.87376 1.86218 1.77020 1.41367 1.19601 1.18585 0.74731 0.84776 0.83441 1.90910 1.49970 1.15655 1.84596 1.19951 1.19935 0.97305 0.94453 1.23553 0.84490 0.96593 0.85373 1.86731 1.77603 1.20030 1.36307 1.24235 1.03389 0.80838 0.94813 1.21660 1.03349 0.93460 0.95304 1.20166 0.78803 0.85348 0.84417 1.90347 1.43368 1.20745 1.85915 1.45861 1.49109 1.25882 1.04180 1.19887 0.91150 0.79057 0.99701 1.21320 0.92731 0.93826 1.50079 0.91448 1.24931 0.99358 0.94703 0.94480 1.69919 1.35710 0.98730 1.47460 0.86486 0.83730 0.78420 0.78965 1.20258 1.20870 1.19499 1.18014 0.93887 0.93869 0.86713 1.21143 1.01969 1.02495 0.90503 1.20873 0.97441 0.96164 0.97909 1.20984 1.01378 0.98522 0.97038 1.20988 0.99770 0.99565 0.92428 1.22468 0.98028 0.96747 1.02177 0.84438 0.92251 0.92212 0.78464 0.88556 0.88535 0.88987 0.88892 0.93354 0.93232 0.92086 0.84142 0.86430 0.87108 0.86753 0.81271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.62 9.05 37.16 0.34 -3.28 16 2 C 0.08 1.63 2.10 -27.88 -0.06 1.57 16 3 H 0.11 2.19 6.03 -51.93 -0.31 1.87 16 4 O -0.33 -6.02 9.10 -47.82 -0.44 -6.45 16 5 C 0.54 8.95 7.68 31.99 0.25 9.19 16 6 O -0.52 -9.71 15.95 -19.39 -0.31 -10.02 16 7 C -0.31 -3.98 6.07 -104.37 -0.63 -4.61 16 8 C 0.17 1.71 11.26 29.20 0.33 2.04 16 9 O -0.30 -2.76 11.02 -13.32 -0.15 -2.91 16 10 C 0.04 0.29 8.22 37.77 0.31 0.60 16 11 C -0.10 -1.00 6.82 -26.74 -0.18 -1.18 16 12 C 0.52 11.13 6.96 -10.99 -0.08 11.05 16 13 O -0.52 -11.60 13.03 -14.15 -0.18 -11.78 16 14 N -0.53 -11.42 2.68 -114.73 -0.31 -11.73 16 15 C 0.22 5.03 4.01 -5.19 -0.02 5.01 16 16 C -0.54 -13.12 6.28 -34.44 -0.22 -13.34 16 17 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 18 C 0.07 1.74 5.44 -17.82 -0.10 1.64 16 19 N -0.88 -22.85 13.29 55.43 0.74 -22.11 16 20 Si 0.90 19.66 29.54 -169.99 -5.02 14.64 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 24 C 0.17 3.54 6.48 -83.69 -0.54 3.00 16 25 C -0.14 -2.74 9.07 -39.39 -0.36 -3.10 16 26 C -0.11 -1.75 10.04 -39.61 -0.40 -2.15 16 27 C -0.16 -2.49 10.04 -39.55 -0.40 -2.89 16 28 C -0.11 -1.80 10.04 -39.61 -0.40 -2.20 16 29 C -0.17 -3.39 8.98 -39.39 -0.35 -3.74 16 30 H 0.14 3.00 3.94 -51.93 -0.20 2.80 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 1.14 8.13 -51.93 -0.42 0.72 16 33 H 0.20 1.65 7.99 -52.49 -0.42 1.23 16 34 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.05 1.15 6.73 -51.93 -0.35 0.80 16 39 H 0.05 1.16 5.56 -51.93 -0.29 0.87 16 40 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 41 H 0.14 2.89 6.20 -52.48 -0.33 2.57 16 42 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 43 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 44 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 45 H 0.17 3.46 4.71 -55.27 -0.26 3.20 16 LS Contribution 374.77 15.07 5.65 5.65 Total: -1.00 -29.18 374.77 -8.04 -37.22 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -5.51 Total: 9.88 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -2.51 Total: -2.37 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: 0.43 Total: -33.84 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -1.08 Total: -31.16 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.18 -8.04 -37.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734193626.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.811 kcal (2) G-P(sol) polarization free energy of solvation -29.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds