Wall clock time and date at job start Wed Apr 1 2020 03:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46976 * 2 1 4 4 O 1.42902 * 109.47314 * 239.99971 * 2 1 3 5 5 C 1.34928 * 117.00011 * 89.99932 * 4 2 1 6 6 O 1.21666 * 119.99765 * 0.02562 * 5 4 2 7 7 C 1.41547 * 119.99912 * 180.02562 * 5 4 2 8 8 C 1.33871 * 125.97563 * 179.97438 * 7 5 4 9 9 O 1.33754 * 114.14279 * 180.02562 * 8 7 5 10 10 C 1.45600 * 110.38201 * 359.97438 * 9 8 7 11 11 C 1.51766 * 125.94683 * 359.90998 * 7 5 4 12 12 C 1.50698 * 109.47261 * 119.99734 * 2 1 3 13 13 O 1.21285 * 120.00011 * 109.84112 * 12 2 1 14 14 N 1.34773 * 120.00288 * 289.84362 * 12 2 1 15 15 C 1.46506 * 119.99963 * 5.37144 * 14 12 2 16 16 C 1.50705 * 109.47216 * 93.21941 * 15 14 12 17 17 H 1.07999 * 119.99516 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00157 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99784 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 120.00283 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47207 * 89.99806 * 20 18 16 22 22 H 1.48495 * 109.47331 * 209.99991 * 20 18 16 23 23 H 1.48503 * 109.46943 * 329.99807 * 20 18 16 24 24 C 1.39928 * 120.00286 * 185.36976 * 14 12 2 25 25 C 1.38874 * 120.07019 * 187.28108 * 24 14 12 26 26 C 1.38109 * 119.92692 * 179.78900 * 25 24 14 27 27 C 1.38279 * 120.07182 * 0.49260 * 26 25 24 28 28 C 1.38278 * 120.14019 * 359.73628 * 27 26 25 29 29 C 1.38108 * 120.07275 * 0.03080 * 28 27 26 30 30 H 1.09004 * 109.47109 * 307.76735 * 1 2 3 31 31 H 1.08996 * 109.47256 * 67.77366 * 1 2 3 32 32 H 1.08997 * 109.46615 * 187.77151 * 1 2 3 33 33 H 1.08000 * 122.92755 * 359.97438 * 8 7 5 34 34 H 1.09002 * 110.49479 * 118.66406 * 10 9 8 35 35 H 1.09002 * 110.49986 * 241.20314 * 10 9 8 36 36 H 1.09003 * 110.70374 * 61.57012 * 11 7 5 37 37 H 1.09003 * 110.75818 * 298.35874 * 11 7 5 38 38 H 1.08994 * 109.47263 * 213.21941 * 15 14 12 39 39 H 1.08999 * 109.47147 * 333.22157 * 15 14 12 40 40 H 0.96996 * 119.99452 * 179.97438 * 19 18 16 41 41 H 1.08006 * 120.03519 * 0.02800 * 25 24 14 42 42 H 1.08007 * 119.96682 * 180.23142 * 26 25 24 43 43 H 1.08000 * 119.93135 * 179.72248 * 27 26 25 44 44 H 1.08004 * 119.96423 * 180.02562 * 28 27 26 45 45 H 1.08000 * 120.03927 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2106 0.0787 -2.2680 6 8 1.9901 1.2748 -2.2370 7 6 2.6813 -0.5236 -3.4594 8 6 2.9237 0.1054 -4.6160 9 8 3.3633 -0.6957 -5.5927 10 6 3.4609 -2.0684 -5.1173 11 6 3.0005 -1.9953 -3.6477 12 6 2.0324 -0.7103 1.2305 13 8 2.5706 -1.7924 1.1287 14 7 1.8835 -0.1433 2.4440 15 6 1.1304 1.1059 2.5814 16 6 -0.3073 0.7926 2.9072 17 1 -0.6278 -0.2343 3.0027 18 6 -1.2133 1.8168 3.0832 19 7 -0.8228 3.0673 2.9673 20 14 -2.9951 1.4285 3.4877 21 1 -3.1643 1.3587 4.9614 22 1 -3.8710 2.4946 2.9388 23 1 -3.3665 0.1233 2.8844 24 6 2.4481 -0.7475 3.5727 25 6 2.1710 -0.2511 4.8397 26 6 2.7264 -0.8525 5.9521 27 6 3.5658 -1.9414 5.8045 28 6 3.8474 -2.4352 4.5440 29 6 3.2914 -1.8413 3.4279 30 1 -0.3633 0.6294 0.8124 31 1 -0.3633 0.3887 -0.9513 32 1 -0.3632 -1.0182 0.1390 33 1 2.7762 1.1670 -4.7491 34 1 2.8011 -2.7189 -5.6915 35 1 4.4905 -2.4211 -5.1779 36 1 2.1108 -2.6055 -3.4926 37 1 3.8025 -2.3054 -2.9778 38 1 1.5625 1.7043 3.3834 39 1 1.1777 1.6635 1.6460 40 1 -1.4603 3.7878 3.0908 41 1 1.5187 0.6020 4.9554 42 1 2.5083 -0.4692 6.9380 43 1 4.0024 -2.4072 6.6756 44 1 4.5031 -3.2861 4.4320 45 1 3.5121 -2.2271 2.4436 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734193626.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:19 Heat of formation + Delta-G solvation = -102.502381 kcal Electronic energy + Delta-G solvation = -30506.196227 eV Core-core repulsion = 26262.090244 eV Total energy + Delta-G solvation = -4244.105984 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.44541 -41.92471 -41.02119 -39.29559 -37.66969 -37.15887 -34.72143 -34.20579 -33.01040 -31.74878 -30.94015 -30.49509 -29.32842 -26.44947 -25.35933 -25.03228 -23.79447 -23.44411 -22.66944 -21.15246 -20.74052 -19.39610 -18.80091 -18.37504 -18.07059 -17.97253 -17.61521 -17.07644 -16.97098 -16.63280 -16.37852 -16.05030 -15.75975 -15.16295 -14.97805 -14.65303 -14.58080 -14.31314 -14.27409 -14.01988 -13.94487 -13.69082 -13.51027 -13.30175 -13.17527 -12.94797 -12.91441 -12.72743 -12.52223 -12.45333 -12.42952 -12.25971 -12.02537 -11.84278 -11.81747 -11.72689 -10.96532 -10.67497 -10.32639 -9.76762 -9.59844 -8.83176 -8.25755 -6.39962 0.00609 0.35347 0.57447 1.27355 1.40118 1.42086 1.47387 1.53731 1.89037 2.11796 2.30056 2.39751 3.02310 3.04207 3.21136 3.48147 3.65605 3.76217 3.88623 4.01994 4.10761 4.11864 4.20159 4.22661 4.40231 4.52041 4.62458 4.64952 4.66001 4.66389 4.73669 4.88681 4.91166 4.91784 5.01023 5.01462 5.24086 5.28550 5.37753 5.45457 5.60431 5.63432 5.68827 5.76448 5.77035 5.89255 6.27419 6.30535 6.64261 6.68435 6.95137 7.28081 8.78679 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009493 B = 0.003688 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2948.692465 B = 7589.672458 C = 9917.149489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.089 3.911 3 H 0.097 0.903 4 O -0.333 6.333 5 C 0.533 3.467 6 O -0.551 6.551 7 C -0.357 4.357 8 C 0.208 3.792 9 O -0.293 6.293 10 C 0.045 3.955 11 C -0.100 4.100 12 C 0.518 3.482 13 O -0.537 6.537 14 N -0.534 5.534 15 C 0.237 3.763 16 C -0.536 4.536 17 H 0.055 0.945 18 C 0.033 3.967 19 N -0.910 5.910 20 Si 0.952 3.048 21 H -0.273 1.273 22 H -0.279 1.279 23 H -0.270 1.270 24 C 0.137 3.863 25 C -0.159 4.159 26 C -0.101 4.101 27 C -0.146 4.146 28 C -0.104 4.104 29 C -0.191 4.191 30 H 0.116 0.884 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.216 0.784 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.034 0.966 39 H 0.039 0.961 40 H 0.271 0.729 41 H 0.120 0.880 42 H 0.147 0.853 43 H 0.154 0.846 44 H 0.147 0.853 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.390 -9.079 -9.603 15.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.031 3.969 3 H 0.115 0.885 4 O -0.249 6.249 5 C 0.384 3.616 6 O -0.445 6.445 7 C -0.361 4.361 8 C 0.139 3.861 9 O -0.201 6.201 10 C -0.028 4.028 11 C -0.137 4.137 12 C 0.308 3.692 13 O -0.417 6.417 14 N -0.254 5.254 15 C 0.118 3.882 16 C -0.574 4.574 17 H 0.073 0.927 18 C -0.169 4.169 19 N -0.548 5.548 20 Si 0.777 3.223 21 H -0.199 1.199 22 H -0.205 1.205 23 H -0.194 1.194 24 C 0.042 3.958 25 C -0.180 4.180 26 C -0.120 4.120 27 C -0.164 4.164 28 C -0.122 4.122 29 C -0.210 4.210 30 H 0.134 0.866 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.232 0.768 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.052 0.948 39 H 0.057 0.943 40 H 0.081 0.919 41 H 0.138 0.862 42 H 0.165 0.835 43 H 0.172 0.828 44 H 0.165 0.835 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 8.575 -9.061 -9.952 15.958 hybrid contribution -1.323 0.471 0.669 1.555 sum 7.252 -8.590 -9.282 14.579 Atomic orbital electron populations 1.22527 0.90654 1.04275 1.05581 1.21822 0.97132 0.96274 0.81712 0.88492 1.86230 1.77349 1.41677 1.19693 1.19216 0.74136 0.84561 0.83692 1.90882 1.51945 1.16792 1.84930 1.19944 1.23092 0.99261 0.93759 1.23837 0.80766 0.97229 0.84313 1.86752 1.76329 1.21114 1.35916 1.24491 1.05528 0.79872 0.92906 1.21675 1.03118 0.91673 0.97249 1.20399 0.78727 0.85376 0.84728 1.90336 1.44012 1.21185 1.86171 1.45803 1.49199 1.25506 1.04893 1.19540 0.90743 0.79546 0.98377 1.21304 0.93387 0.93135 1.49622 0.92676 1.25532 1.02518 0.94482 0.94364 1.70000 1.36840 0.99432 1.48537 0.85638 0.79812 0.78151 0.78727 1.19900 1.20453 1.19434 1.18342 0.95452 0.95198 0.86789 1.21134 1.02909 1.02669 0.91253 1.21249 0.96585 0.96023 0.98118 1.21443 0.99692 0.97272 0.98016 1.21376 0.99138 0.99845 0.91877 1.22435 0.98794 0.96946 1.02853 0.86595 0.91269 0.92109 0.76808 0.85978 0.86094 0.89318 0.89620 0.94825 0.94338 0.91950 0.86217 0.83527 0.82837 0.83532 0.82697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.11 9.05 71.98 0.65 -6.46 16 2 C 0.09 3.73 2.10 29.85 0.06 3.80 16 3 H 0.10 4.23 6.03 -2.39 -0.01 4.22 16 4 O -0.33 -12.87 9.10 -52.03 -0.47 -13.35 16 5 C 0.53 18.39 7.68 68.64 0.53 18.92 16 6 O -0.55 -21.45 15.95 19.29 0.31 -21.14 16 7 C -0.36 -8.98 6.07 -19.70 -0.12 -9.10 16 8 C 0.21 3.90 11.26 66.83 0.75 4.65 16 9 O -0.29 -4.59 11.02 -70.56 -0.78 -5.37 16 10 C 0.04 0.51 8.22 72.38 0.60 1.11 16 11 C -0.10 -1.89 6.82 30.59 0.21 -1.68 16 12 C 0.52 23.20 6.96 87.66 0.61 23.81 16 13 O -0.54 -24.73 13.03 15.79 0.21 -24.52 16 14 N -0.53 -24.26 2.68 -635.30 -1.71 -25.96 16 15 C 0.24 11.48 4.01 85.63 0.34 11.82 16 16 C -0.54 -27.04 6.28 25.60 0.16 -26.88 16 17 H 0.06 2.88 7.81 -2.91 -0.02 2.86 16 18 C 0.03 1.68 5.44 84.65 0.46 2.14 16 19 N -0.91 -48.50 13.29 21.45 0.28 -48.22 16 20 Si 0.95 40.80 29.54 68.60 2.03 42.82 16 21 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 22 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 23 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 24 C 0.14 5.84 6.48 38.15 0.25 6.09 16 25 C -0.16 -6.31 9.07 22.39 0.20 -6.10 16 26 C -0.10 -3.16 10.04 22.25 0.22 -2.94 16 27 C -0.15 -4.00 10.04 22.29 0.22 -3.78 16 28 C -0.10 -3.19 10.04 22.25 0.22 -2.96 16 29 C -0.19 -7.43 8.98 22.39 0.20 -7.23 16 30 H 0.12 5.33 3.94 -2.38 -0.01 5.32 16 31 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.06 2.42 8.13 -2.39 -0.02 2.40 16 33 H 0.22 3.20 7.99 -2.91 -0.02 3.18 16 34 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.03 1.71 6.73 -2.39 -0.02 1.69 16 39 H 0.04 1.94 5.56 -2.39 -0.01 1.92 16 40 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 41 H 0.12 5.17 6.20 -2.91 -0.02 5.15 16 42 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 43 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 44 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 45 H 0.16 6.50 4.71 -46.97 -0.22 6.28 16 Total: -1.00 -65.71 374.77 6.27 -59.45 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: 0.83 Total: 31.10 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: 5.57 Total: 5.19 kcal Atomic # 7 Polarization: -72.76 SS G_CDS: -1.42 Total: -74.18 kcal Atomic # 8 Polarization: -63.64 SS G_CDS: -0.74 Total: -64.38 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.82 kcal Total: -65.71 6.27 -59.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734193626.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.056 kcal (2) G-P(sol) polarization free energy of solvation -65.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds