Wall clock time and date at job start Wed Apr 1 2020 03:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.44454 * 2 1 4 4 O 1.42763 * 109.49843 * 119.77185 * 2 1 3 5 5 C 1.35985 * 116.86881 * 166.19418 * 4 2 1 6 6 C 1.38395 * 120.65792 * 147.30618 * 5 4 2 7 7 C 1.38318 * 119.86979 * 180.27693 * 6 5 4 8 8 C 1.38276 * 120.25811 * 359.97438 * 7 6 5 9 9 C 1.38289 * 120.20472 * 0.02562 * 8 7 6 10 10 C 1.38506 * 119.80928 * 359.97438 * 9 8 7 11 11 N 1.40221 * 120.74290 * 180.02562 * 10 9 8 12 12 C 1.46502 * 120.50594 * 15.39182 * 11 10 9 13 13 C 1.50702 * 109.46827 * 90.00112 * 12 11 10 14 14 O 1.20827 * 120.00046 * 354.96096 * 13 12 11 15 15 O 1.34226 * 120.00034 * 174.95311 * 13 12 11 16 16 C 1.45205 * 117.00366 * 185.18826 * 15 13 12 17 17 C 1.52990 * 109.47109 * 184.17964 * 16 15 13 18 18 C 1.50704 * 115.55476 * 64.76407 * 17 16 15 19 19 H 1.08000 * 119.99776 * 266.67550 * 18 17 16 20 20 C 1.37878 * 119.99813 * 86.67323 * 18 17 16 21 21 N 1.31514 * 119.99794 * 178.72288 * 20 18 17 22 22 Si 1.86797 * 119.99973 * 358.71836 * 20 18 17 23 23 H 1.48508 * 109.47165 * 90.83557 * 22 20 18 24 24 H 1.48497 * 109.47269 * 210.83196 * 22 20 18 25 25 H 1.48500 * 109.47282 * 330.83696 * 22 20 18 26 26 C 1.53007 * 117.49824 * 279.09144 * 17 16 15 27 27 C 1.53008 * 117.49728 * 210.43272 * 17 16 15 28 28 C 1.35081 * 118.98385 * 195.41723 * 11 10 9 29 29 O 1.21293 * 120.13032 * 181.70306 * 28 11 10 30 30 H 1.09004 * 109.47496 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46968 * 299.92781 * 1 2 3 32 32 H 1.08998 * 109.47380 * 59.92422 * 1 2 3 33 33 H 1.07994 * 120.06632 * 0.25802 * 6 5 4 34 34 H 1.08005 * 119.86680 * 180.02562 * 7 6 5 35 35 H 1.08005 * 119.89561 * 179.97438 * 8 7 6 36 36 H 1.07999 * 120.09445 * 179.97438 * 9 8 7 37 37 H 1.08999 * 109.46900 * 210.00115 * 12 11 10 38 38 H 1.09000 * 109.47173 * 330.00397 * 12 11 10 39 39 H 1.09002 * 109.46499 * 304.17866 * 16 15 13 40 40 H 1.08998 * 109.46673 * 64.17414 * 16 15 13 41 41 H 0.96999 * 119.99769 * 180.02562 * 21 20 18 42 42 H 1.09000 * 117.49765 * 0.02562 * 26 17 16 43 43 H 1.08997 * 117.49639 * 145.02496 * 26 17 16 44 44 H 1.08992 * 117.50018 * 214.97696 * 27 17 16 45 45 H 1.08996 * 117.49487 * 0.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8928 1.0278 0.0000 4 8 2.0065 -0.6682 1.1681 5 6 3.3221 -1.0119 1.1860 6 6 4.0333 -1.0202 2.3732 7 6 5.3723 -1.3669 2.3717 8 6 6.0029 -1.7058 1.1887 9 6 5.2989 -1.6998 -0.0016 10 6 3.9578 -1.3535 -0.0066 11 7 3.2251 -1.3414 -1.2020 12 6 3.7462 -2.0038 -2.4004 13 6 3.2774 -3.4359 -2.4267 14 8 2.6567 -3.8856 -1.4926 15 8 3.5493 -4.2117 -3.4877 16 6 2.9694 -5.5429 -3.4971 17 6 3.4706 -6.3089 -4.7228 18 6 4.9503 -6.5936 -4.7512 19 1 5.6215 -5.9131 -5.2538 20 6 5.4469 -7.7229 -4.1354 21 7 6.7349 -7.9845 -4.1817 22 14 4.2903 -8.8812 -3.2355 23 1 3.8093 -9.9277 -4.1730 24 1 5.0111 -9.5218 -2.1062 25 1 3.1310 -8.1150 -2.7119 26 6 2.7784 -6.0342 -6.0594 27 6 2.5375 -7.3585 -5.3302 28 6 2.0317 -0.7093 -1.2319 29 8 1.3664 -0.7123 -2.2461 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5127 0.8906 32 1 -0.3634 0.5150 -0.8893 33 1 3.5438 -0.7562 3.2989 34 1 5.9271 -1.3738 3.2983 35 1 7.0488 -1.9752 1.1942 36 1 5.7934 -1.9644 -0.9246 37 1 3.3832 -1.4863 -3.2884 38 1 4.8357 -1.9784 -2.3849 39 1 3.2635 -6.0736 -2.5915 40 1 1.8828 -5.4654 -3.5362 41 1 7.0843 -8.7791 -3.7488 42 1 1.9661 -5.3074 -6.0654 43 1 3.3930 -6.0598 -6.9591 44 1 2.9939 -8.2546 -5.7506 45 1 1.5665 -7.5028 -4.8567 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744276909.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:48 Heat of formation + Delta-G solvation = -80.436068 kcal Electronic energy + Delta-G solvation = -30667.948404 eV Core-core repulsion = 26424.799287 eV Total energy + Delta-G solvation = -4243.149117 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.93445 -39.96439 -39.11331 -37.97691 -37.15933 -35.97067 -35.33076 -32.41121 -32.14113 -30.55335 -30.34199 -28.68427 -27.10019 -25.37668 -24.38344 -23.60414 -22.82324 -21.74839 -20.76341 -19.62666 -19.49099 -19.18498 -17.79707 -17.46981 -17.09195 -16.67542 -16.03918 -15.88631 -15.66365 -15.56043 -14.99280 -14.90203 -14.71239 -14.39993 -14.22024 -13.80630 -13.51378 -13.23727 -13.08118 -12.71501 -12.64400 -12.51632 -12.46108 -12.19975 -12.12972 -12.01019 -11.43333 -11.43063 -11.17975 -10.99095 -10.91388 -10.59238 -10.33945 -10.17863 -10.11960 -9.99718 -9.66283 -9.06959 -8.91266 -8.63132 -8.61772 -8.09500 -6.15956 -4.18934 0.85196 1.04179 1.91356 2.12947 2.49565 2.95454 3.13400 3.24700 3.34867 3.38456 3.49257 3.67764 4.35842 4.36788 4.42479 4.53483 4.68903 4.73956 4.77584 4.92376 5.01461 5.09089 5.11346 5.17137 5.21457 5.34251 5.35963 5.45333 5.63150 5.70550 5.79068 5.92257 5.93910 5.94829 6.04207 6.09433 6.22483 6.24462 6.39669 6.40334 6.60755 6.64313 6.86177 7.04512 7.05506 7.08364 7.43472 7.65347 8.13791 8.45859 8.88437 9.46504 10.95763 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013074 B = 0.003375 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.083555 B = 8295.495853 C = 9521.234704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.084 3.916 3 H 0.104 0.896 4 O -0.301 6.301 5 C 0.083 3.917 6 C -0.110 4.110 7 C -0.112 4.112 8 C -0.107 4.107 9 C -0.123 4.123 10 C 0.103 3.897 11 N -0.535 5.535 12 C 0.114 3.886 13 C 0.440 3.560 14 O -0.508 6.508 15 O -0.328 6.328 16 C 0.109 3.891 17 C -0.006 4.006 18 C -0.482 4.482 19 H 0.082 0.918 20 C 0.078 3.922 21 N -0.895 5.895 22 Si 0.875 3.125 23 H -0.275 1.275 24 H -0.291 1.291 25 H -0.262 1.262 26 C -0.172 4.172 27 C -0.190 4.190 28 C 0.495 3.505 29 O -0.500 6.500 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.138 0.862 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.069 0.931 40 H 0.045 0.955 41 H 0.265 0.735 42 H 0.074 0.926 43 H 0.091 0.909 44 H 0.095 0.905 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.581 18.393 11.663 22.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.025 3.975 3 H 0.121 0.879 4 O -0.215 6.215 5 C 0.037 3.963 6 C -0.129 4.129 7 C -0.131 4.131 8 C -0.126 4.126 9 C -0.143 4.143 10 C 0.009 3.991 11 N -0.261 5.261 12 C -0.009 4.009 13 C 0.281 3.719 14 O -0.397 6.397 15 O -0.242 6.242 16 C 0.036 3.964 17 C -0.007 4.007 18 C -0.519 4.519 19 H 0.100 0.900 20 C -0.125 4.125 21 N -0.532 5.532 22 Si 0.702 3.298 23 H -0.201 1.201 24 H -0.218 1.218 25 H -0.186 1.186 26 C -0.209 4.209 27 C -0.227 4.227 28 C 0.283 3.717 29 O -0.373 6.373 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.156 0.844 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.154 0.846 37 H 0.152 0.848 38 H 0.149 0.851 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.093 0.907 43 H 0.109 0.891 44 H 0.113 0.887 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.182 18.041 11.471 22.255 hybrid contribution -0.438 -1.071 0.359 1.211 sum -6.620 16.971 11.830 21.720 Atomic orbital electron populations 1.21730 0.88857 1.04678 1.04001 1.22573 0.98128 0.95976 0.80833 0.87877 1.86168 1.21862 1.74347 1.39169 1.18574 0.83285 1.01782 0.92666 1.20504 0.93578 1.02633 0.96182 1.21005 0.93704 0.99728 0.98619 1.21023 1.00480 0.99541 0.91519 1.20789 0.91267 1.02209 1.00047 1.18080 0.92624 1.03775 0.84650 1.45276 1.19775 1.50912 1.10092 1.21079 1.02121 0.88534 0.89125 1.23756 0.77633 0.89159 0.81379 1.90654 1.37964 1.74456 1.36606 1.86511 1.68010 1.27794 1.41922 1.23087 0.94344 0.78062 1.00911 1.19329 0.95160 0.96930 0.89293 1.20213 0.87696 1.08344 1.35652 0.90029 1.24974 0.94873 0.97352 0.95262 1.69878 1.12295 1.27129 1.43904 0.86931 0.81543 0.81531 0.79746 1.20094 1.21769 1.18639 1.22833 1.02496 0.97760 0.97838 1.23009 0.99686 0.94216 1.05839 1.21593 0.79935 0.79096 0.91102 1.90763 1.54287 1.59057 1.33173 0.90875 0.90116 0.88957 0.84407 0.84841 0.84784 0.84622 0.84814 0.85078 0.91287 0.93630 0.92468 0.90750 0.89054 0.88687 0.90757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.14 37.16 0.34 -0.91 16 2 C 0.08 0.92 3.68 -27.86 -0.10 0.82 16 3 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 4 O -0.30 -3.72 10.07 -19.69 -0.20 -3.92 16 5 C 0.08 1.03 6.45 -39.09 -0.25 0.78 16 6 C -0.11 -1.09 10.00 -39.49 -0.39 -1.48 16 7 C -0.11 -0.98 10.04 -39.54 -0.40 -1.37 16 8 C -0.11 -1.03 10.04 -39.55 -0.40 -1.42 16 9 C -0.12 -1.42 9.36 -39.46 -0.37 -1.79 16 10 C 0.10 1.35 6.39 -83.49 -0.53 0.82 16 11 N -0.54 -7.62 2.21 -114.49 -0.25 -7.87 16 12 C 0.11 1.62 5.79 -5.19 -0.03 1.59 16 13 C 0.44 8.46 8.01 36.01 0.29 8.74 16 14 O -0.51 -11.19 16.11 -18.75 -0.30 -11.50 16 15 O -0.33 -6.99 10.15 -39.25 -0.40 -7.39 16 16 C 0.11 2.49 4.99 37.15 0.19 2.67 16 17 C -0.01 -0.14 1.06 -155.66 -0.16 -0.31 16 18 C -0.48 -13.33 9.36 -34.44 -0.32 -13.65 16 19 H 0.08 2.46 8.06 -52.49 -0.42 2.03 16 20 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 21 N -0.90 -26.80 13.96 55.43 0.77 -26.02 16 22 Si 0.87 21.68 24.88 -169.99 -4.23 17.45 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.26 -6.28 5.74 56.52 0.32 -5.96 16 26 C -0.17 -3.52 9.96 -26.69 -0.27 -3.79 16 27 C -0.19 -4.03 7.62 -26.68 -0.20 -4.24 16 28 C 0.49 7.03 7.37 -10.82 -0.08 6.95 16 29 O -0.50 -8.17 15.83 5.55 0.09 -8.08 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.78 7.86 -51.93 -0.41 0.38 16 33 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 35 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 36 H 0.14 1.41 6.12 -52.49 -0.32 1.09 16 37 H 0.13 1.71 7.49 -51.93 -0.39 1.33 16 38 H 0.13 1.47 5.96 -51.93 -0.31 1.16 16 39 H 0.07 1.68 6.46 -51.93 -0.34 1.34 16 40 H 0.05 0.97 8.09 -51.93 -0.42 0.55 16 41 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 43 H 0.09 1.85 8.14 -51.93 -0.42 1.42 16 44 H 0.09 2.07 7.29 -51.93 -0.38 1.69 16 45 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 LS Contribution 376.57 15.07 5.67 5.67 Total: -1.00 -34.92 376.57 -7.64 -42.56 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -6.00 Total: 3.56 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -2.80 Total: -4.46 kcal Atomic # 7 Polarization: -34.41 SS G_CDS: 0.52 Total: -33.89 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -0.81 Total: -30.89 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.23 Total: 17.45 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.92 -7.64 -42.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276909.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.871 kcal (2) G-P(sol) polarization free energy of solvation -34.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds