Wall clock time and date at job start Wed Apr 1 2020 03:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.44454 * 2 1 4 4 O 1.42763 * 109.49843 * 119.77185 * 2 1 3 5 5 C 1.35985 * 116.86881 * 166.19418 * 4 2 1 6 6 C 1.38395 * 120.65792 * 147.30618 * 5 4 2 7 7 C 1.38318 * 119.86979 * 180.27693 * 6 5 4 8 8 C 1.38276 * 120.25811 * 359.97438 * 7 6 5 9 9 C 1.38289 * 120.20472 * 0.02562 * 8 7 6 10 10 C 1.38506 * 119.80928 * 359.97438 * 9 8 7 11 11 N 1.40221 * 120.74290 * 180.02562 * 10 9 8 12 12 C 1.46502 * 120.50594 * 15.39182 * 11 10 9 13 13 C 1.50702 * 109.46827 * 90.00112 * 12 11 10 14 14 O 1.20827 * 120.00046 * 354.96096 * 13 12 11 15 15 O 1.34226 * 120.00034 * 174.95311 * 13 12 11 16 16 C 1.45205 * 117.00366 * 185.18826 * 15 13 12 17 17 C 1.52990 * 109.47109 * 184.17964 * 16 15 13 18 18 C 1.50704 * 115.55476 * 64.76407 * 17 16 15 19 19 H 1.08000 * 119.99776 * 266.67550 * 18 17 16 20 20 C 1.37878 * 119.99813 * 86.67323 * 18 17 16 21 21 N 1.31514 * 119.99794 * 178.72288 * 20 18 17 22 22 Si 1.86797 * 119.99973 * 358.71836 * 20 18 17 23 23 H 1.48508 * 109.47165 * 90.83557 * 22 20 18 24 24 H 1.48497 * 109.47269 * 210.83196 * 22 20 18 25 25 H 1.48500 * 109.47282 * 330.83696 * 22 20 18 26 26 C 1.53007 * 117.49824 * 279.09144 * 17 16 15 27 27 C 1.53008 * 117.49728 * 210.43272 * 17 16 15 28 28 C 1.35081 * 118.98385 * 195.41723 * 11 10 9 29 29 O 1.21293 * 120.13032 * 181.70306 * 28 11 10 30 30 H 1.09004 * 109.47496 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46968 * 299.92781 * 1 2 3 32 32 H 1.08998 * 109.47380 * 59.92422 * 1 2 3 33 33 H 1.07994 * 120.06632 * 0.25802 * 6 5 4 34 34 H 1.08005 * 119.86680 * 180.02562 * 7 6 5 35 35 H 1.08005 * 119.89561 * 179.97438 * 8 7 6 36 36 H 1.07999 * 120.09445 * 179.97438 * 9 8 7 37 37 H 1.08999 * 109.46900 * 210.00115 * 12 11 10 38 38 H 1.09000 * 109.47173 * 330.00397 * 12 11 10 39 39 H 1.09002 * 109.46499 * 304.17866 * 16 15 13 40 40 H 1.08998 * 109.46673 * 64.17414 * 16 15 13 41 41 H 0.96999 * 119.99769 * 180.02562 * 21 20 18 42 42 H 1.09000 * 117.49765 * 0.02562 * 26 17 16 43 43 H 1.08997 * 117.49639 * 145.02496 * 26 17 16 44 44 H 1.08992 * 117.50018 * 214.97696 * 27 17 16 45 45 H 1.08996 * 117.49487 * 0.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8928 1.0278 0.0000 4 8 2.0065 -0.6682 1.1681 5 6 3.3221 -1.0119 1.1860 6 6 4.0333 -1.0202 2.3732 7 6 5.3723 -1.3669 2.3717 8 6 6.0029 -1.7058 1.1887 9 6 5.2989 -1.6998 -0.0016 10 6 3.9578 -1.3535 -0.0066 11 7 3.2251 -1.3414 -1.2020 12 6 3.7462 -2.0038 -2.4004 13 6 3.2774 -3.4359 -2.4267 14 8 2.6567 -3.8856 -1.4926 15 8 3.5493 -4.2117 -3.4877 16 6 2.9694 -5.5429 -3.4971 17 6 3.4706 -6.3089 -4.7228 18 6 4.9503 -6.5936 -4.7512 19 1 5.6215 -5.9131 -5.2538 20 6 5.4469 -7.7229 -4.1354 21 7 6.7349 -7.9845 -4.1817 22 14 4.2903 -8.8812 -3.2355 23 1 3.8093 -9.9277 -4.1730 24 1 5.0111 -9.5218 -2.1062 25 1 3.1310 -8.1150 -2.7119 26 6 2.7784 -6.0342 -6.0594 27 6 2.5375 -7.3585 -5.3302 28 6 2.0317 -0.7093 -1.2319 29 8 1.3664 -0.7123 -2.2461 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5127 0.8906 32 1 -0.3634 0.5150 -0.8893 33 1 3.5438 -0.7562 3.2989 34 1 5.9271 -1.3738 3.2983 35 1 7.0488 -1.9752 1.1942 36 1 5.7934 -1.9644 -0.9246 37 1 3.3832 -1.4863 -3.2884 38 1 4.8357 -1.9784 -2.3849 39 1 3.2635 -6.0736 -2.5915 40 1 1.8828 -5.4654 -3.5362 41 1 7.0843 -8.7791 -3.7488 42 1 1.9661 -5.3074 -6.0654 43 1 3.3930 -6.0598 -6.9591 44 1 2.9939 -8.2546 -5.7506 45 1 1.5665 -7.5028 -4.8567 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744276909.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:47 Heat of formation + Delta-G solvation = -101.676112 kcal Electronic energy + Delta-G solvation = -30668.869441 eV Core-core repulsion = 26424.799287 eV Total energy + Delta-G solvation = -4244.070154 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.91139 -41.47921 -40.10470 -39.08878 -38.64940 -37.30591 -36.71332 -34.29613 -33.22156 -31.51791 -31.28634 -29.71830 -28.72910 -27.36164 -25.40273 -24.44944 -23.75917 -23.39504 -22.12867 -21.11033 -20.55858 -20.39513 -19.15127 -18.78442 -18.28493 -18.13517 -17.65226 -17.25156 -16.83873 -16.74953 -16.52124 -15.87972 -15.67562 -15.62049 -15.31155 -15.14098 -14.89073 -14.70280 -14.31781 -14.19874 -14.01629 -13.83753 -13.37949 -13.32106 -13.17575 -13.12142 -12.88074 -12.81453 -12.35825 -12.29762 -12.21121 -12.14361 -12.09321 -11.81255 -11.71655 -11.43638 -11.14398 -10.98486 -10.71247 -10.44446 -9.72722 -9.00685 -8.34534 -6.41311 -0.00659 0.24570 0.79445 0.99160 1.18510 1.28220 1.32961 1.41970 1.76797 2.11843 2.29983 2.65815 2.78479 2.98070 3.07916 3.48188 3.55929 3.63674 3.77672 3.80794 3.89507 3.90097 4.00274 4.13113 4.20442 4.23902 4.31481 4.32789 4.43849 4.49278 4.55090 4.67264 4.73686 4.76556 4.88253 4.95421 5.06634 5.13369 5.18834 5.20263 5.39568 5.41937 5.48802 5.61421 5.64924 5.69354 6.21167 6.25949 6.38868 6.57788 6.66832 7.27452 8.80863 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013074 B = 0.003375 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.083555 B = 8295.495853 C = 9521.234704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.084 3.916 3 H 0.135 0.865 4 O -0.310 6.310 5 C 0.063 3.937 6 C -0.111 4.111 7 C -0.101 4.101 8 C -0.111 4.111 9 C -0.137 4.137 10 C 0.072 3.928 11 N -0.539 5.539 12 C 0.119 3.881 13 C 0.437 3.563 14 O -0.540 6.540 15 O -0.340 6.340 16 C 0.115 3.885 17 C -0.038 4.038 18 C -0.481 4.481 19 H 0.039 0.961 20 C 0.027 3.973 21 N -0.941 5.941 22 Si 0.928 3.072 23 H -0.257 1.257 24 H -0.295 1.295 25 H -0.249 1.249 26 C -0.152 4.152 27 C -0.180 4.180 28 C 0.484 3.516 29 O -0.532 6.532 30 H 0.049 0.951 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.161 0.839 34 H 0.168 0.832 35 H 0.157 0.843 36 H 0.138 0.862 37 H 0.148 0.852 38 H 0.159 0.841 39 H 0.046 0.954 40 H 0.063 0.937 41 H 0.267 0.733 42 H 0.102 0.898 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.714 19.294 13.253 24.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.025 3.975 3 H 0.152 0.848 4 O -0.225 6.225 5 C 0.017 3.983 6 C -0.129 4.129 7 C -0.120 4.120 8 C -0.129 4.129 9 C -0.157 4.157 10 C -0.021 4.021 11 N -0.264 5.264 12 C -0.004 4.004 13 C 0.280 3.720 14 O -0.430 6.430 15 O -0.254 6.254 16 C 0.041 3.959 17 C -0.039 4.039 18 C -0.518 4.518 19 H 0.058 0.942 20 C -0.171 4.171 21 N -0.581 5.581 22 Si 0.753 3.247 23 H -0.182 1.182 24 H -0.222 1.222 25 H -0.173 1.173 26 C -0.189 4.189 27 C -0.217 4.217 28 C 0.274 3.726 29 O -0.407 6.407 30 H 0.068 0.932 31 H 0.126 0.874 32 H 0.116 0.884 33 H 0.178 0.822 34 H 0.186 0.814 35 H 0.174 0.826 36 H 0.156 0.844 37 H 0.165 0.835 38 H 0.177 0.823 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.120 0.880 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.316 18.961 13.068 24.162 hybrid contribution 0.022 -1.264 -0.105 1.269 sum -7.294 17.696 12.963 23.117 Atomic orbital electron populations 1.21763 0.87756 1.03657 1.05653 1.22824 0.98898 0.96772 0.78990 0.84794 1.86142 1.22155 1.74785 1.39451 1.18942 0.83467 1.02572 0.93288 1.20889 0.94066 1.01821 0.96158 1.21448 0.93375 0.97522 0.99618 1.21388 1.01546 0.98824 0.91162 1.21016 0.91043 1.02495 1.01173 1.18363 0.93351 1.05799 0.84552 1.45388 1.20090 1.50499 1.10427 1.21248 1.03670 0.85299 0.90211 1.24746 0.76613 0.90448 0.80157 1.90626 1.39502 1.75361 1.37518 1.86525 1.68383 1.27499 1.43042 1.22844 0.95193 0.78602 0.99269 1.19223 0.93249 0.99903 0.91564 1.20318 0.89791 1.07271 1.34465 0.94239 1.25720 0.96135 0.99090 0.96139 1.70008 1.14270 1.28129 1.45673 0.86050 0.79976 0.79901 0.78744 1.18197 1.22186 1.17306 1.22884 1.02201 0.97990 0.95864 1.23081 0.99910 0.93838 1.04883 1.22327 0.79603 0.78863 0.91833 1.90730 1.55090 1.60450 1.34474 0.93164 0.87361 0.88354 0.82173 0.81414 0.82582 0.84402 0.83483 0.82344 0.93586 0.91887 0.92376 0.88016 0.89283 0.89362 0.87961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 9.14 71.98 0.66 -1.63 16 2 C 0.08 1.75 3.68 29.86 0.11 1.86 16 3 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 4 O -0.31 -7.36 10.07 -93.38 -0.94 -8.30 16 5 C 0.06 1.50 6.45 22.59 0.15 1.64 16 6 C -0.11 -1.93 10.00 22.33 0.22 -1.71 16 7 C -0.10 -1.46 10.04 22.30 0.22 -1.24 16 8 C -0.11 -1.90 10.04 22.29 0.22 -1.67 16 9 C -0.14 -3.05 9.36 22.35 0.21 -2.84 16 10 C 0.07 1.87 6.39 38.14 0.24 2.11 16 11 N -0.54 -15.30 2.21 -634.36 -1.40 -16.70 16 12 C 0.12 3.38 5.79 85.63 0.50 3.87 16 13 C 0.44 16.99 8.01 71.24 0.57 17.56 16 14 O -0.54 -24.13 16.11 21.96 0.35 -23.78 16 15 O -0.34 -14.60 10.15 -51.38 -0.52 -15.12 16 16 C 0.11 5.16 4.99 71.98 0.36 5.52 16 17 C -0.04 -1.79 1.06 -52.92 -0.06 -1.84 16 18 C -0.48 -27.24 9.36 25.60 0.24 -27.01 16 19 H 0.04 2.49 8.06 -2.91 -0.02 2.47 16 20 C 0.03 1.58 5.47 84.65 0.46 2.04 16 21 N -0.94 -58.02 13.96 21.45 0.30 -57.72 16 22 Si 0.93 44.56 24.88 68.60 1.71 46.27 16 23 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 24 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 25 H -0.25 -11.38 5.74 99.48 0.57 -10.81 16 26 C -0.15 -5.94 9.96 30.62 0.30 -5.63 16 27 C -0.18 -7.20 7.62 30.62 0.23 -6.96 16 28 C 0.48 13.74 7.37 87.62 0.65 14.39 16 29 O -0.53 -17.56 15.83 -3.07 -0.05 -17.61 16 30 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.10 1.58 7.86 -2.39 -0.02 1.56 16 33 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 34 H 0.17 1.25 8.06 -2.91 -0.02 1.22 16 35 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 36 H 0.14 2.83 6.12 -2.91 -0.02 2.81 16 37 H 0.15 3.76 7.49 -2.39 -0.02 3.74 16 38 H 0.16 3.52 5.96 -2.39 -0.01 3.51 16 39 H 0.05 2.24 6.46 -2.39 -0.02 2.23 16 40 H 0.06 2.58 8.09 -2.39 -0.02 2.56 16 41 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 42 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 43 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 44 H 0.09 3.65 7.29 -2.39 -0.02 3.64 16 45 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 Total: -1.00 -78.45 376.57 5.62 -72.82 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 0.88 Total: 21.69 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 5.29 Total: -1.54 kcal Atomic # 7 Polarization: -73.32 SS G_CDS: -1.10 Total: -74.43 kcal Atomic # 8 Polarization: -63.66 SS G_CDS: -1.16 Total: -64.82 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.71 Total: 46.27 kcal Total: -78.45 5.62 -72.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276909.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.854 kcal (2) G-P(sol) polarization free energy of solvation -78.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds