Wall clock time and date at job start Wed Apr 1 2020 03:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.44167 * 2 1 4 4 O 1.43003 * 109.44314 * 240.10314 * 2 1 3 5 5 C 1.35989 * 116.71475 * 286.34797 * 4 2 1 6 6 C 1.38398 * 120.67164 * 147.16109 * 5 4 2 7 7 C 1.38310 * 119.87262 * 180.12330 * 6 5 4 8 8 C 1.38285 * 120.25920 * 359.97438 * 7 6 5 9 9 C 1.38289 * 120.19975 * 359.97438 * 8 7 6 10 10 C 1.38505 * 119.81286 * 359.97438 * 9 8 7 11 11 N 1.40206 * 120.73472 * 180.02562 * 10 9 8 12 12 C 1.46501 * 120.51018 * 15.53174 * 11 10 9 13 13 C 1.50697 * 109.47097 * 89.99895 * 12 11 10 14 14 O 1.20829 * 120.00284 * 0.02562 * 13 12 11 15 15 O 1.34227 * 120.00277 * 180.02562 * 13 12 11 16 16 C 1.45200 * 117.00437 * 179.97438 * 15 13 12 17 17 C 1.53003 * 109.46979 * 179.97438 * 16 15 13 18 18 C 1.50695 * 115.55373 * 39.89486 * 17 16 15 19 19 H 1.08004 * 119.99789 * 264.97129 * 18 17 16 20 20 C 1.37871 * 120.00115 * 84.96522 * 18 17 16 21 21 N 1.31521 * 119.99961 * 358.50873 * 20 18 17 22 22 Si 1.86806 * 120.00269 * 178.50887 * 20 18 17 23 23 H 1.48499 * 109.46907 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47116 * 119.99936 * 22 20 18 25 25 H 1.48502 * 109.47013 * 240.00193 * 22 20 18 26 26 C 1.53001 * 117.49701 * 254.18248 * 17 16 15 27 27 C 1.52995 * 60.00090 * 252.51396 * 26 17 16 28 28 C 1.35093 * 118.98189 * 195.50717 * 11 10 9 29 29 O 1.21291 * 120.13949 * 181.64692 * 28 11 10 30 30 H 1.09004 * 109.46473 * 300.06291 * 1 2 3 31 31 H 1.08997 * 109.47359 * 60.06395 * 1 2 3 32 32 H 1.08995 * 109.46902 * 180.02562 * 1 2 3 33 33 H 1.07997 * 120.06082 * 0.10844 * 6 5 4 34 34 H 1.07999 * 119.87070 * 179.71202 * 7 6 5 35 35 H 1.08001 * 119.90033 * 179.97438 * 8 7 6 36 36 H 1.08000 * 120.09269 * 180.02562 * 9 8 7 37 37 H 1.08998 * 109.47506 * 209.99830 * 12 11 10 38 38 H 1.09000 * 109.47088 * 330.00027 * 12 11 10 39 39 H 1.08987 * 109.47179 * 300.00201 * 16 15 13 40 40 H 1.09001 * 109.46582 * 60.00338 * 16 15 13 41 41 H 0.97002 * 119.99719 * 179.97438 * 21 20 18 42 42 H 1.09002 * 117.50292 * 0.02562 * 26 17 16 43 43 H 1.08999 * 117.49819 * 145.02557 * 26 17 16 44 44 H 1.08998 * 117.50345 * 252.51094 * 27 26 17 45 45 H 1.09007 * 117.49781 * 107.49295 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8928 1.0279 0.0000 4 8 2.0060 -0.6721 -1.1690 5 6 1.8871 -2.0267 -1.1865 6 6 1.6580 -2.7001 -2.3737 7 6 1.5372 -4.0779 -2.3720 8 6 1.6450 -4.7854 -1.1887 9 6 1.8750 -4.1196 0.0014 10 6 1.9979 -2.7400 0.0060 11 7 2.2317 -2.0455 1.2013 12 6 2.6839 -2.7576 2.3991 13 6 4.1903 -2.7925 2.4239 14 8 4.8214 -2.2753 1.5328 15 8 4.8310 -3.3983 3.4359 16 6 6.2824 -3.3939 3.3941 17 6 6.8302 -4.1247 4.6216 18 6 6.0786 -5.3660 5.0283 19 1 5.3120 -5.3088 5.7869 20 6 6.3694 -6.5745 4.4318 21 7 7.2823 -6.6388 3.4872 22 14 5.4670 -8.1206 4.9652 23 1 4.4958 -7.7822 6.0364 24 1 4.7418 -8.6960 3.8041 25 1 6.4455 -9.1126 5.4789 26 6 7.4441 -3.2735 5.7349 27 6 8.3458 -4.1163 4.8308 28 6 2.0340 -0.7094 1.2314 29 8 2.2584 -0.0833 2.2457 30 1 -0.3632 0.5148 0.8895 31 1 -0.3634 0.5128 -0.8905 32 1 -0.3633 -1.0276 0.0005 33 1 1.5735 -2.1507 -3.2996 34 1 1.3538 -4.6029 -3.2977 35 1 1.5494 -5.8611 -1.1940 36 1 1.9593 -4.6739 0.9244 37 1 2.3178 -2.2432 3.2876 38 1 2.2971 -3.7765 2.3838 39 1 6.6213 -3.8982 2.4893 40 1 6.6427 -2.3652 3.3934 41 1 7.4872 -7.4891 3.0678 42 1 7.4575 -2.1929 5.5931 43 1 7.3044 -3.6112 6.7618 44 1 8.7992 -5.0084 5.2627 45 1 8.9527 -3.5901 4.0938 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744276910.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:50 Heat of formation + Delta-G solvation = -85.648292 kcal Electronic energy + Delta-G solvation = -30770.572685 eV Core-core repulsion = 26527.197550 eV Total energy + Delta-G solvation = -4243.375136 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.93141 -39.79514 -38.99665 -37.90882 -36.82975 -35.81195 -35.13714 -32.27921 -31.96397 -30.55468 -30.29966 -28.58492 -26.69370 -25.29362 -24.51842 -23.73955 -22.77644 -21.19503 -20.54909 -19.46015 -19.39909 -19.27306 -17.68499 -17.28324 -16.74941 -16.23700 -15.96521 -15.75483 -15.65922 -15.48112 -15.21374 -14.64176 -14.62685 -14.37992 -14.20811 -13.76631 -13.42751 -13.16858 -13.08858 -12.80455 -12.64125 -12.45305 -12.19089 -12.08322 -11.87815 -11.62392 -11.41173 -11.38179 -11.01028 -10.92911 -10.86261 -10.53411 -10.34446 -10.13131 -10.00698 -9.84052 -9.55272 -8.94119 -8.86548 -8.48567 -8.16993 -8.03046 -6.06947 -4.12161 0.90431 1.08273 2.02241 2.19312 2.65866 3.04814 3.24774 3.31947 3.33553 3.37844 3.55450 3.72979 4.37323 4.39544 4.44564 4.56005 4.74709 4.82946 4.97168 5.03131 5.11934 5.14010 5.20457 5.22662 5.25632 5.32603 5.37896 5.46315 5.60407 5.76696 5.96683 5.98068 6.10672 6.18366 6.28245 6.29498 6.43425 6.46402 6.64492 6.67725 6.73716 6.99882 7.11549 7.13014 7.33002 7.46539 7.50514 7.85359 8.27627 8.43444 8.88798 9.53028 11.02638 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012925 B = 0.003413 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.877182 B = 8203.032162 C = 9420.273954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.083 3.917 3 H 0.150 0.850 4 O -0.298 6.298 5 C 0.083 3.917 6 C -0.110 4.110 7 C -0.113 4.113 8 C -0.107 4.107 9 C -0.124 4.124 10 C 0.105 3.895 11 N -0.533 5.533 12 C 0.114 3.886 13 C 0.438 3.562 14 O -0.512 6.512 15 O -0.321 6.321 16 C 0.119 3.881 17 C 0.035 3.965 18 C -0.481 4.481 19 H 0.063 0.937 20 C 0.068 3.932 21 N -0.883 5.883 22 Si 0.892 3.108 23 H -0.271 1.271 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.209 4.209 27 C -0.144 4.144 28 C 0.498 3.502 29 O -0.503 6.503 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.138 0.862 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.129 0.871 39 H 0.069 0.931 40 H 0.040 0.960 41 H 0.260 0.740 42 H 0.066 0.934 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.679 7.568 -10.945 20.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.024 3.976 3 H 0.168 0.832 4 O -0.213 6.213 5 C 0.037 3.963 6 C -0.129 4.129 7 C -0.132 4.132 8 C -0.126 4.126 9 C -0.145 4.145 10 C 0.011 3.989 11 N -0.258 5.258 12 C -0.009 4.009 13 C 0.279 3.721 14 O -0.402 6.402 15 O -0.235 6.235 16 C 0.046 3.954 17 C 0.034 3.966 18 C -0.518 4.518 19 H 0.082 0.918 20 C -0.135 4.135 21 N -0.520 5.520 22 Si 0.719 3.281 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.247 4.247 27 C -0.181 4.181 28 C 0.287 3.713 29 O -0.376 6.376 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.155 0.845 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.153 0.847 37 H 0.151 0.849 38 H 0.147 0.853 39 H 0.088 0.912 40 H 0.058 0.942 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.100 0.900 44 H 0.107 0.893 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.129 8.101 -10.794 20.274 hybrid contribution -0.050 -0.988 0.343 1.047 sum -15.179 7.113 -10.452 19.754 Atomic orbital electron populations 1.22341 0.92340 1.04028 1.04585 1.22876 0.96436 0.97536 0.80748 0.83229 1.86284 1.79147 1.16237 1.39608 1.18557 1.02621 0.82500 0.92609 1.20507 1.01886 0.94329 0.96210 1.20990 1.00672 0.92945 0.98555 1.21008 0.99683 1.00365 0.91543 1.20793 1.02380 0.91251 1.00030 1.18074 1.03437 0.92711 0.84714 1.45244 1.62937 1.07521 1.10119 1.21075 0.89967 1.00881 0.89008 1.23685 0.91601 0.76018 0.80840 1.90640 1.68579 1.43346 1.37616 1.86557 1.24711 1.68291 1.43909 1.22763 0.73666 0.97647 1.01346 1.18784 0.92388 0.94949 0.90473 1.20341 1.19587 0.90097 1.21805 0.91844 1.24997 0.94929 0.98817 0.94710 1.70014 1.31646 1.25543 1.24794 0.86540 0.79791 0.83147 0.78583 1.19572 1.21033 1.21014 1.23122 1.08869 0.95531 0.97128 1.22523 0.94152 1.00353 1.01101 1.21481 0.77439 0.81471 0.90944 1.90779 1.48904 1.64637 1.33273 0.89864 0.89605 0.91431 0.84454 0.84922 0.84905 0.84668 0.84910 0.85290 0.91241 0.94207 0.93061 0.91574 0.89995 0.89294 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.39 9.30 37.16 0.35 -1.05 16 2 C 0.08 0.93 3.80 -27.84 -0.11 0.82 16 3 H 0.15 1.40 8.14 -51.93 -0.42 0.98 16 4 O -0.30 -3.77 10.18 -19.70 -0.20 -3.97 16 5 C 0.08 1.06 5.85 -39.09 -0.23 0.83 16 6 C -0.11 -1.12 10.00 -39.50 -0.39 -1.52 16 7 C -0.11 -1.02 10.04 -39.54 -0.40 -1.42 16 8 C -0.11 -1.08 10.04 -39.55 -0.40 -1.47 16 9 C -0.12 -1.50 9.36 -39.46 -0.37 -1.87 16 10 C 0.10 1.43 6.39 -83.50 -0.53 0.89 16 11 N -0.53 -7.92 2.21 -114.48 -0.25 -8.17 16 12 C 0.11 1.72 5.79 -5.19 -0.03 1.69 16 13 C 0.44 8.89 8.03 36.00 0.29 9.17 16 14 O -0.51 -11.80 16.18 -18.75 -0.30 -12.10 16 15 O -0.32 -7.28 9.61 -39.25 -0.38 -7.66 16 16 C 0.12 2.88 5.53 37.16 0.21 3.08 16 17 C 0.03 0.86 1.81 -155.66 -0.28 0.58 16 18 C -0.48 -12.91 8.24 -34.44 -0.28 -13.20 16 19 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 20 C 0.07 1.83 5.41 -17.82 -0.10 1.74 16 21 N -0.88 -24.68 12.80 55.43 0.71 -23.97 16 22 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 C -0.21 -4.61 9.88 -26.73 -0.26 -4.87 16 27 C -0.14 -3.37 9.33 -26.73 -0.25 -3.62 16 28 C 0.50 7.40 6.93 -10.80 -0.07 7.32 16 29 O -0.50 -8.75 16.77 5.55 0.09 -8.65 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.57 7.81 -51.93 -0.41 0.16 16 33 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 34 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 35 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.14 1.51 6.12 -52.49 -0.32 1.19 16 37 H 0.13 1.84 7.49 -51.93 -0.39 1.45 16 38 H 0.13 1.58 5.96 -51.93 -0.31 1.27 16 39 H 0.07 1.81 8.13 -51.94 -0.42 1.39 16 40 H 0.04 0.91 7.94 -51.93 -0.41 0.50 16 41 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 42 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16 43 H 0.08 1.76 8.14 -51.93 -0.42 1.33 16 44 H 0.09 2.19 8.14 -51.93 -0.42 1.77 16 45 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 385.02 15.07 5.80 5.80 Total: -1.00 -33.76 385.02 -8.45 -42.20 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -6.03 Total: 3.80 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -2.87 Total: -2.88 kcal Atomic # 7 Polarization: -32.60 SS G_CDS: 0.46 Total: -32.15 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -0.79 Total: -32.38 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.76 -8.45 -42.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276910.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.443 kcal (2) G-P(sol) polarization free energy of solvation -33.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds