Wall clock time and date at job start Wed Apr 1 2020 03:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.44167 * 2 1 4 4 O 1.43003 * 109.44314 * 240.10314 * 2 1 3 5 5 C 1.35989 * 116.71475 * 286.34797 * 4 2 1 6 6 C 1.38398 * 120.67164 * 147.16109 * 5 4 2 7 7 C 1.38310 * 119.87262 * 180.12330 * 6 5 4 8 8 C 1.38285 * 120.25920 * 359.97438 * 7 6 5 9 9 C 1.38289 * 120.19975 * 359.97438 * 8 7 6 10 10 C 1.38505 * 119.81286 * 359.97438 * 9 8 7 11 11 N 1.40206 * 120.73472 * 180.02562 * 10 9 8 12 12 C 1.46501 * 120.51018 * 15.53174 * 11 10 9 13 13 C 1.50697 * 109.47097 * 89.99895 * 12 11 10 14 14 O 1.20829 * 120.00284 * 0.02562 * 13 12 11 15 15 O 1.34227 * 120.00277 * 180.02562 * 13 12 11 16 16 C 1.45200 * 117.00437 * 179.97438 * 15 13 12 17 17 C 1.53003 * 109.46979 * 179.97438 * 16 15 13 18 18 C 1.50695 * 115.55373 * 39.89486 * 17 16 15 19 19 H 1.08004 * 119.99789 * 264.97129 * 18 17 16 20 20 C 1.37871 * 120.00115 * 84.96522 * 18 17 16 21 21 N 1.31521 * 119.99961 * 358.50873 * 20 18 17 22 22 Si 1.86806 * 120.00269 * 178.50887 * 20 18 17 23 23 H 1.48499 * 109.46907 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47116 * 119.99936 * 22 20 18 25 25 H 1.48502 * 109.47013 * 240.00193 * 22 20 18 26 26 C 1.53001 * 117.49701 * 254.18248 * 17 16 15 27 27 C 1.52995 * 60.00090 * 252.51396 * 26 17 16 28 28 C 1.35093 * 118.98189 * 195.50717 * 11 10 9 29 29 O 1.21291 * 120.13949 * 181.64692 * 28 11 10 30 30 H 1.09004 * 109.46473 * 300.06291 * 1 2 3 31 31 H 1.08997 * 109.47359 * 60.06395 * 1 2 3 32 32 H 1.08995 * 109.46902 * 180.02562 * 1 2 3 33 33 H 1.07997 * 120.06082 * 0.10844 * 6 5 4 34 34 H 1.07999 * 119.87070 * 179.71202 * 7 6 5 35 35 H 1.08001 * 119.90033 * 179.97438 * 8 7 6 36 36 H 1.08000 * 120.09269 * 180.02562 * 9 8 7 37 37 H 1.08998 * 109.47506 * 209.99830 * 12 11 10 38 38 H 1.09000 * 109.47088 * 330.00027 * 12 11 10 39 39 H 1.08987 * 109.47179 * 300.00201 * 16 15 13 40 40 H 1.09001 * 109.46582 * 60.00338 * 16 15 13 41 41 H 0.97002 * 119.99719 * 179.97438 * 21 20 18 42 42 H 1.09002 * 117.50292 * 0.02562 * 26 17 16 43 43 H 1.08999 * 117.49819 * 145.02557 * 26 17 16 44 44 H 1.08998 * 117.50345 * 252.51094 * 27 26 17 45 45 H 1.09007 * 117.49781 * 107.49295 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8928 1.0279 0.0000 4 8 2.0060 -0.6721 -1.1690 5 6 1.8871 -2.0267 -1.1865 6 6 1.6580 -2.7001 -2.3737 7 6 1.5372 -4.0779 -2.3720 8 6 1.6450 -4.7854 -1.1887 9 6 1.8750 -4.1196 0.0014 10 6 1.9979 -2.7400 0.0060 11 7 2.2317 -2.0455 1.2013 12 6 2.6839 -2.7576 2.3991 13 6 4.1903 -2.7925 2.4239 14 8 4.8214 -2.2753 1.5328 15 8 4.8310 -3.3983 3.4359 16 6 6.2824 -3.3939 3.3941 17 6 6.8302 -4.1247 4.6216 18 6 6.0786 -5.3660 5.0283 19 1 5.3120 -5.3088 5.7869 20 6 6.3694 -6.5745 4.4318 21 7 7.2823 -6.6388 3.4872 22 14 5.4670 -8.1206 4.9652 23 1 4.4958 -7.7822 6.0364 24 1 4.7418 -8.6960 3.8041 25 1 6.4455 -9.1126 5.4789 26 6 7.4441 -3.2735 5.7349 27 6 8.3458 -4.1163 4.8308 28 6 2.0340 -0.7094 1.2314 29 8 2.2584 -0.0833 2.2457 30 1 -0.3632 0.5148 0.8895 31 1 -0.3634 0.5128 -0.8905 32 1 -0.3633 -1.0276 0.0005 33 1 1.5735 -2.1507 -3.2996 34 1 1.3538 -4.6029 -3.2977 35 1 1.5494 -5.8611 -1.1940 36 1 1.9593 -4.6739 0.9244 37 1 2.3178 -2.2432 3.2876 38 1 2.2971 -3.7765 2.3838 39 1 6.6213 -3.8982 2.4893 40 1 6.6427 -2.3652 3.3934 41 1 7.4872 -7.4891 3.0678 42 1 7.4575 -2.1929 5.5931 43 1 7.3044 -3.6112 6.7618 44 1 8.7992 -5.0084 5.2627 45 1 8.9527 -3.5901 4.0938 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744276910.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:50 Heat of formation + Delta-G solvation = -104.253122 kcal Electronic energy + Delta-G solvation = -30771.379451 eV Core-core repulsion = 26527.197550 eV Total energy + Delta-G solvation = -4244.181902 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.94433 -41.40015 -40.06412 -38.94009 -38.52214 -37.20380 -36.66398 -34.01110 -33.08784 -31.45117 -31.36724 -29.67548 -28.40429 -27.28086 -25.44967 -24.69688 -23.75535 -23.01871 -22.01182 -21.25163 -20.42878 -20.30956 -19.06053 -18.58118 -18.34005 -17.62903 -17.48103 -16.90391 -16.84519 -16.60213 -16.53217 -16.32013 -15.74685 -15.60070 -15.28294 -15.09841 -14.91259 -14.41228 -14.22336 -14.06392 -13.76768 -13.54878 -13.50532 -13.30007 -13.14649 -12.92523 -12.90918 -12.85227 -12.35777 -12.26255 -12.21877 -12.17595 -12.08907 -11.71537 -11.66100 -11.34090 -11.11753 -10.90383 -10.49365 -10.06606 -9.71676 -8.99100 -8.11294 -6.22917 0.00967 0.25494 0.86123 1.03753 1.20053 1.42048 1.44937 1.56503 1.87776 2.18188 2.44202 2.65787 2.80237 3.17674 3.32068 3.49132 3.59395 3.69380 3.72052 3.85706 3.93237 4.00826 4.09123 4.23124 4.29062 4.32362 4.39606 4.43196 4.53647 4.58928 4.62913 4.68530 4.79553 4.88659 4.92347 5.01641 5.10734 5.19902 5.21782 5.29410 5.49464 5.53140 5.60834 5.64946 5.71426 5.76059 6.21961 6.33132 6.40504 6.66936 6.81890 7.45527 8.98077 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012925 B = 0.003413 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.877182 B = 8203.032162 C = 9420.273954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.083 3.917 3 H 0.164 0.836 4 O -0.308 6.308 5 C 0.065 3.935 6 C -0.111 4.111 7 C -0.101 4.101 8 C -0.111 4.111 9 C -0.139 4.139 10 C 0.073 3.927 11 N -0.537 5.537 12 C 0.119 3.881 13 C 0.435 3.565 14 O -0.544 6.544 15 O -0.332 6.332 16 C 0.130 3.870 17 C 0.003 3.997 18 C -0.493 4.493 19 H 0.057 0.943 20 C 0.023 3.977 21 N -0.913 5.913 22 Si 0.954 3.046 23 H -0.264 1.264 24 H -0.279 1.279 25 H -0.283 1.283 26 C -0.184 4.184 27 C -0.145 4.145 28 C 0.488 3.512 29 O -0.540 6.540 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.062 0.938 33 H 0.161 0.839 34 H 0.168 0.832 35 H 0.156 0.844 36 H 0.137 0.863 37 H 0.145 0.855 38 H 0.159 0.841 39 H 0.039 0.961 40 H 0.046 0.954 41 H 0.260 0.740 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.072 0.928 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.610 7.063 -12.011 22.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.024 3.976 3 H 0.181 0.819 4 O -0.223 6.223 5 C 0.019 3.981 6 C -0.130 4.130 7 C -0.120 4.120 8 C -0.129 4.129 9 C -0.159 4.159 10 C -0.020 4.020 11 N -0.261 5.261 12 C -0.004 4.004 13 C 0.278 3.722 14 O -0.436 6.436 15 O -0.246 6.246 16 C 0.056 3.944 17 C 0.002 3.998 18 C -0.531 4.531 19 H 0.075 0.925 20 C -0.176 4.176 21 N -0.551 5.551 22 Si 0.779 3.221 23 H -0.188 1.188 24 H -0.205 1.205 25 H -0.209 1.209 26 C -0.221 4.221 27 C -0.183 4.183 28 C 0.278 3.722 29 O -0.416 6.416 30 H 0.109 0.891 31 H 0.127 0.873 32 H 0.081 0.919 33 H 0.178 0.822 34 H 0.186 0.814 35 H 0.174 0.826 36 H 0.155 0.845 37 H 0.163 0.837 38 H 0.176 0.824 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.090 0.910 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.084 7.588 -11.879 22.148 hybrid contribution 0.555 -0.836 0.585 1.162 sum -16.529 6.752 -11.293 21.127 Atomic orbital electron populations 1.22307 0.89648 1.04178 1.06053 1.23094 0.98455 0.97309 0.78710 0.81861 1.86256 1.79704 1.16491 1.39869 1.18915 1.03384 0.82562 0.93192 1.20898 1.00866 0.95027 0.96172 1.21441 0.98371 0.92580 0.99563 1.21373 0.98783 1.01630 0.91146 1.21013 1.02821 0.90881 1.01164 1.18361 1.05599 0.93465 0.84550 1.45346 1.62512 1.07787 1.10460 1.21221 0.86005 1.02953 0.90197 1.24738 0.93489 0.74490 0.79527 1.90612 1.69717 1.44629 1.38597 1.86560 1.23886 1.69020 1.45094 1.22463 0.74838 0.97360 0.99736 1.18923 0.93100 0.95691 0.92058 1.20545 1.19656 0.91213 1.21655 0.92489 1.25711 0.95632 1.01654 0.94653 1.70130 1.32976 1.26154 1.25814 0.85567 0.78715 0.79388 0.78396 1.18809 1.20469 1.20855 1.23135 1.06021 0.96385 0.96540 1.22438 0.93607 1.00323 1.01887 1.22279 0.76717 0.81486 0.91709 1.90744 1.50768 1.65330 1.34807 0.89107 0.87294 0.91906 0.82165 0.81407 0.82637 0.84539 0.83700 0.82411 0.94269 0.93586 0.93131 0.89377 0.89334 0.90970 0.90808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.30 71.98 0.67 -1.69 16 2 C 0.08 1.81 3.80 29.88 0.11 1.92 16 3 H 0.16 2.98 8.14 -2.39 -0.02 2.96 16 4 O -0.31 -7.55 10.18 -93.42 -0.95 -8.51 16 5 C 0.07 1.59 5.85 22.59 0.13 1.73 16 6 C -0.11 -1.99 10.00 22.33 0.22 -1.77 16 7 C -0.10 -1.51 10.04 22.30 0.22 -1.29 16 8 C -0.11 -1.97 10.04 22.29 0.22 -1.74 16 9 C -0.14 -3.22 9.36 22.35 0.21 -3.01 16 10 C 0.07 1.96 6.39 38.14 0.24 2.21 16 11 N -0.54 -16.03 2.21 -634.32 -1.40 -17.43 16 12 C 0.12 3.64 5.79 85.63 0.50 4.14 16 13 C 0.43 18.07 8.03 71.24 0.57 18.64 16 14 O -0.54 -25.90 16.18 21.96 0.36 -25.55 16 15 O -0.33 -15.37 9.61 -51.39 -0.49 -15.86 16 16 C 0.13 6.43 5.53 71.98 0.40 6.83 16 17 C 0.00 0.14 1.81 -52.93 -0.10 0.04 16 18 C -0.49 -26.67 8.24 25.60 0.21 -26.46 16 19 H 0.06 3.08 7.81 -2.91 -0.02 3.05 16 20 C 0.02 1.26 5.41 84.65 0.46 1.72 16 21 N -0.91 -51.77 12.80 21.45 0.27 -51.50 16 22 Si 0.95 42.23 29.54 68.60 2.03 44.26 16 23 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 24 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 25 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 26 C -0.18 -7.93 9.88 30.59 0.30 -7.63 16 27 C -0.14 -6.84 9.33 30.59 0.29 -6.56 16 28 C 0.49 14.66 6.93 87.63 0.61 15.27 16 29 O -0.54 -19.25 16.77 -3.06 -0.05 -19.30 16 30 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 0.97 7.81 -2.39 -0.02 0.96 16 33 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 34 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 35 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 36 H 0.14 2.96 6.12 -2.91 -0.02 2.95 16 37 H 0.15 4.05 7.49 -2.39 -0.02 4.04 16 38 H 0.16 3.80 5.96 -2.39 -0.01 3.78 16 39 H 0.04 2.13 8.13 -2.39 -0.02 2.11 16 40 H 0.05 2.16 7.94 -2.39 -0.02 2.14 16 41 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 42 H 0.09 3.40 8.08 -2.39 -0.02 3.38 16 43 H 0.09 3.68 8.14 -2.39 -0.02 3.66 16 44 H 0.07 3.61 8.14 -2.39 -0.02 3.59 16 45 H 0.07 3.28 8.14 -2.38 -0.02 3.26 16 Total: -1.00 -74.49 385.02 6.05 -68.45 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 1.01 Total: 23.11 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: 5.27 Total: 2.33 kcal Atomic # 7 Polarization: -67.80 SS G_CDS: -1.12 Total: -68.93 kcal Atomic # 8 Polarization: -68.08 SS G_CDS: -1.14 Total: -69.22 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -74.49 6.05 -68.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276910.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.807 kcal (2) G-P(sol) polarization free energy of solvation -74.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds