Wall clock time and date at job start Wed Apr 1 2020 03:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.46865 * 2 1 4 4 C 1.36723 * 120.00359 * 84.59587 * 3 2 1 5 5 H 1.08004 * 120.00537 * 168.91189 * 4 3 2 6 6 C 1.39103 * 120.00154 * 348.91755 * 4 3 2 7 7 N 1.31341 * 119.99713 * 2.29144 * 6 4 3 8 8 Si 1.86801 * 120.00220 * 182.29360 * 6 4 3 9 9 H 1.48508 * 109.46884 * 59.99719 * 8 6 4 10 10 H 1.48497 * 109.47039 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.46994 * 299.99872 * 8 6 4 12 12 C 1.34776 * 119.99685 * 264.59703 * 3 2 1 13 13 O 1.21742 * 120.00260 * 185.09816 * 12 3 2 14 14 C 1.46643 * 120.00399 * 5.09679 * 12 3 2 15 15 C 1.35556 * 119.99871 * 285.76318 * 14 12 3 16 16 C 1.46955 * 119.99618 * 352.30493 * 15 14 12 17 17 C 1.39959 * 120.15725 * 326.18974 * 16 15 14 18 18 C 1.37786 * 119.84770 * 179.78772 * 17 16 15 19 19 C 1.38691 * 120.14770 * 0.48761 * 18 17 16 20 20 F 1.35099 * 119.84419 * 179.71696 * 19 18 17 21 21 C 1.38690 * 120.30909 * 359.74128 * 19 18 17 22 22 C 1.37774 * 120.15293 * 0.02765 * 21 19 18 23 23 N 1.40154 * 120.00135 * 105.75478 * 14 12 3 24 24 N 1.40604 * 127.38404 * 173.40918 * 23 14 12 25 25 N 1.28945 * 106.65451 * 180.26467 * 24 23 14 26 26 N 1.28422 * 110.20812 * 359.97438 * 25 24 23 27 27 C 1.30761 * 110.63694 * 0.02562 * 26 25 24 28 28 C 1.50706 * 126.36472 * 179.97438 * 27 26 25 29 29 H 1.08999 * 109.47291 * 300.00539 * 1 2 3 30 30 H 1.09004 * 109.47255 * 60.00715 * 1 2 3 31 31 H 1.09003 * 109.46883 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46977 * 239.99898 * 2 1 3 33 33 H 1.08995 * 109.46844 * 119.99955 * 2 1 3 34 34 H 0.96994 * 119.99661 * 180.02562 * 7 6 4 35 35 H 1.07991 * 119.99875 * 172.31726 * 15 14 12 36 36 H 1.08006 * 120.08077 * 359.97438 * 17 16 15 37 37 H 1.08002 * 119.92350 * 180.25237 * 18 17 16 38 38 H 1.08000 * 119.92453 * 179.97438 * 21 19 18 39 39 H 1.08004 * 120.07788 * 180.02562 * 22 21 19 40 40 H 1.08997 * 109.47257 * 270.63176 * 28 27 26 41 41 H 1.08996 * 109.46840 * 30.63061 * 28 27 26 42 42 H 1.09000 * 109.47085 * 150.62851 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1410 2.0630 1.1787 5 1 2.6640 3.0076 1.2044 6 6 1.5924 1.5400 2.3451 7 7 0.9958 0.3701 2.3231 8 14 1.7042 2.5015 3.9428 9 1 1.0223 3.8108 3.7812 10 1 1.0473 1.7326 5.0302 11 1 3.1313 2.7257 4.2868 12 6 2.3465 1.9799 -1.1620 13 8 2.8392 3.0931 -1.1554 14 6 2.1102 1.2904 -2.4345 15 6 2.9134 0.2646 -2.8089 16 6 4.1185 -0.0477 -2.0280 17 6 4.8415 0.9790 -1.4099 18 6 5.9680 0.6786 -0.6756 19 6 6.3916 -0.6367 -0.5566 20 9 7.5003 -0.9237 0.1601 21 6 5.6828 -1.6585 -1.1705 22 6 4.5519 -1.3729 -1.9038 23 7 1.0539 1.6918 -3.2635 24 7 0.7649 1.2329 -4.5607 25 7 -0.2856 1.8698 -4.9526 26 7 -0.6825 2.6772 -4.0361 27 6 0.0985 2.6064 -2.9898 28 6 -0.0412 3.3984 -1.7152 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.6129 0.0056 3.1363 35 1 2.6678 -0.3230 -3.6810 36 1 4.5154 2.0042 -1.5057 37 1 6.5244 1.4695 -0.1947 38 1 6.0185 -2.6805 -1.0741 39 1 4.0006 -2.1696 -2.3809 40 1 0.5109 4.3337 -1.8063 41 1 -1.0943 3.6142 -1.5352 42 1 0.3586 2.8200 -0.8823 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751107985.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:49 Heat of formation + Delta-G solvation = 113.820424 kcal Electronic energy + Delta-G solvation = -31629.400385 eV Core-core repulsion = 27335.800059 eV Total energy + Delta-G solvation = -4293.600326 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.78037 -42.91637 -39.96678 -38.36142 -35.94487 -35.26539 -33.36372 -32.48622 -31.86163 -31.03769 -29.78961 -29.11635 -28.07072 -25.70973 -24.71031 -23.08612 -22.49649 -22.46575 -21.89812 -20.70577 -19.37714 -17.69072 -17.42721 -16.97726 -16.51126 -16.25645 -15.78833 -15.47944 -15.41837 -14.76568 -14.70129 -14.48361 -14.18684 -13.70041 -13.43275 -13.28087 -13.16272 -12.97850 -12.85535 -12.69030 -12.47670 -12.29045 -12.06397 -11.88952 -11.81133 -11.75138 -11.42505 -11.27947 -11.07288 -10.78609 -10.65497 -10.59922 -10.45546 -10.32401 -9.87164 -9.38846 -9.18325 -8.98230 -8.94816 -8.16103 -7.83273 -6.61319 -4.23952 0.36140 1.31704 1.41551 1.86210 2.28302 2.55353 2.93788 3.04748 3.06632 3.40649 3.75805 3.79634 4.19788 4.24285 4.37237 4.71826 4.79497 4.84961 4.89279 4.96624 5.10274 5.21221 5.38958 5.46527 5.62413 5.75824 5.83138 5.85300 5.96674 6.01672 6.09408 6.19992 6.23178 6.29894 6.36213 6.44032 6.45557 6.59888 6.60704 6.76569 7.00829 7.02861 7.23298 7.45040 7.63585 8.07073 8.65961 8.71259 8.93054 9.44045 10.22985 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.007932 B = 0.006368 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3529.194841 B = 4395.854344 C = 6819.529348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.108 3.892 3 N -0.396 5.396 4 C -0.298 4.298 5 H 0.113 0.887 6 C 0.032 3.968 7 N -0.857 5.857 8 Si 0.936 3.064 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.270 1.270 12 C 0.455 3.545 13 O -0.583 6.583 14 C 0.092 3.908 15 C -0.077 4.077 16 C -0.070 4.070 17 C -0.066 4.066 18 C -0.146 4.146 19 C 0.102 3.898 20 F -0.143 7.143 21 C -0.159 4.159 22 C -0.070 4.070 23 N -0.310 5.310 24 N -0.096 5.096 25 N -0.042 5.042 26 N -0.342 5.342 27 C 0.272 3.728 28 C -0.090 4.090 29 H 0.097 0.903 30 H 0.009 0.991 31 H 0.040 0.960 32 H 0.035 0.965 33 H 0.123 0.877 34 H 0.273 0.727 35 H 0.143 0.857 36 H 0.159 0.841 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.604 -3.761 -2.136 5.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.015 4.015 3 N -0.110 5.110 4 C -0.426 4.426 5 H 0.130 0.870 6 C -0.173 4.173 7 N -0.496 5.496 8 Si 0.762 3.238 9 H -0.194 1.194 10 H -0.206 1.206 11 H -0.195 1.195 12 C 0.242 3.758 13 O -0.470 6.470 14 C -0.005 4.005 15 C -0.100 4.100 16 C -0.071 4.071 17 C -0.084 4.084 18 C -0.165 4.165 19 C 0.083 3.917 20 F -0.122 7.122 21 C -0.178 4.178 22 C -0.088 4.088 23 N -0.100 5.100 24 N -0.081 5.081 25 N -0.037 5.037 26 N -0.194 5.194 27 C -0.003 4.003 28 C -0.150 4.150 29 H 0.115 0.885 30 H 0.028 0.972 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.140 0.860 34 H 0.085 0.915 35 H 0.160 0.840 36 H 0.176 0.824 37 H 0.154 0.846 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.123 0.877 41 H 0.116 0.884 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.282 -3.722 -3.237 5.925 hybrid contribution 0.522 0.039 1.551 1.637 sum 3.803 -3.684 -1.686 5.557 Atomic orbital electron populations 1.22209 0.96309 1.00261 1.01106 1.21971 0.94916 0.82704 1.01870 1.43791 1.50817 1.11871 1.04488 1.19874 1.33701 1.05335 0.83650 0.86977 1.25443 0.95285 0.96375 1.00153 1.70106 1.34360 1.16087 1.29007 0.85808 0.79106 0.79331 0.79561 1.19411 1.20600 1.19513 1.16726 0.89770 0.87222 0.82056 1.90723 1.50520 1.19946 1.85856 1.20318 0.88619 0.98512 0.93019 1.21910 0.93185 0.95151 0.99801 1.18682 0.95088 0.93655 0.99641 1.22044 0.92484 1.01389 0.92491 1.21058 0.98850 0.94875 1.01721 1.17929 0.85010 0.94064 0.94707 1.91476 1.50429 1.94346 1.75917 1.20922 0.97084 0.98855 1.00959 1.21059 0.95045 0.95386 0.97358 1.48846 1.20673 1.28235 1.12267 1.82526 1.13635 1.20776 0.91171 1.77913 1.03876 1.02105 1.19777 1.74455 1.25632 1.20535 0.98773 1.25947 0.85213 0.90465 0.98648 1.20869 1.05076 0.99957 0.89111 0.88497 0.97168 0.94115 0.94685 0.85963 0.91530 0.83972 0.82403 0.84633 0.84774 0.84782 0.87701 0.88396 0.87048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.48 37.16 0.35 -2.36 16 2 C 0.11 2.14 5.09 -4.04 -0.02 2.11 16 3 N -0.40 -8.28 2.07 -116.32 -0.24 -8.52 16 4 C -0.30 -6.70 9.39 -15.05 -0.14 -6.84 16 5 H 0.11 2.64 7.19 -52.48 -0.38 2.27 16 6 C 0.03 0.69 5.29 -17.44 -0.09 0.60 16 7 N -0.86 -18.32 7.18 55.50 0.40 -17.92 16 8 Si 0.94 17.63 29.55 -169.99 -5.02 12.61 16 9 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 10 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 11 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 12 C 0.46 9.31 1.26 -12.87 -0.02 9.30 16 13 O -0.58 -13.23 14.45 5.15 0.07 -13.16 16 14 C 0.09 1.72 5.40 -81.62 -0.44 1.27 16 15 C -0.08 -1.25 8.10 -37.01 -0.30 -1.55 16 16 C -0.07 -1.09 4.60 -105.07 -0.48 -1.57 16 17 C -0.07 -1.13 8.32 -39.10 -0.33 -1.45 16 18 C -0.15 -2.29 10.01 -39.58 -0.40 -2.68 16 19 C 0.10 1.50 7.31 -39.25 -0.29 1.22 16 20 F -0.14 -2.10 17.26 2.25 0.04 -2.07 16 21 C -0.16 -2.07 10.01 -39.58 -0.40 -2.47 16 22 C -0.07 -0.92 9.79 -39.10 -0.38 -1.30 16 23 N -0.31 -5.91 3.85 -6.73 -0.03 -5.93 16 24 N -0.10 -1.82 13.32 60.35 0.80 -1.01 16 25 N -0.04 -0.82 13.39 60.35 0.81 -0.01 16 26 N -0.34 -6.56 12.16 32.76 0.40 -6.16 16 27 C 0.27 5.10 8.08 -155.18 -1.25 3.84 16 28 C -0.09 -1.53 9.03 36.01 0.33 -1.20 16 29 H 0.10 2.03 5.86 -51.93 -0.30 1.73 16 30 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.03 0.64 4.91 -51.93 -0.25 0.39 16 33 H 0.12 2.63 5.93 -51.93 -0.31 2.33 16 34 H 0.27 5.64 8.31 -40.82 -0.34 5.30 16 35 H 0.14 2.04 7.76 -52.49 -0.41 1.64 16 36 H 0.16 3.03 4.94 -52.48 -0.26 2.77 16 37 H 0.14 1.94 8.06 -52.49 -0.42 1.52 16 38 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 39 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 40 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 41 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.11 2.14 5.18 -51.93 -0.27 1.87 16 LS Contribution 352.50 15.07 5.31 5.31 Total: -1.00 -24.64 352.50 -5.59 -30.23 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -4.27 Total: 9.72 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -3.86 Total: -3.09 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: 2.14 Total: -39.56 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.07 Total: -13.16 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.02 Total: 12.61 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -24.64 -5.59 -30.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751107985.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.052 kcal (2) G-P(sol) polarization free energy of solvation -24.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds