Wall clock time and date at job start Wed Apr 1 2020 03:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.46865 * 2 1 4 4 C 1.36723 * 120.00359 * 84.59587 * 3 2 1 5 5 H 1.08004 * 120.00537 * 168.91189 * 4 3 2 6 6 C 1.39103 * 120.00154 * 348.91755 * 4 3 2 7 7 N 1.31341 * 119.99713 * 2.29144 * 6 4 3 8 8 Si 1.86801 * 120.00220 * 182.29360 * 6 4 3 9 9 H 1.48508 * 109.46884 * 59.99719 * 8 6 4 10 10 H 1.48497 * 109.47039 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.46994 * 299.99872 * 8 6 4 12 12 C 1.34776 * 119.99685 * 264.59703 * 3 2 1 13 13 O 1.21742 * 120.00260 * 185.09816 * 12 3 2 14 14 C 1.46643 * 120.00399 * 5.09679 * 12 3 2 15 15 C 1.35556 * 119.99871 * 285.76318 * 14 12 3 16 16 C 1.46955 * 119.99618 * 352.30493 * 15 14 12 17 17 C 1.39959 * 120.15725 * 326.18974 * 16 15 14 18 18 C 1.37786 * 119.84770 * 179.78772 * 17 16 15 19 19 C 1.38691 * 120.14770 * 0.48761 * 18 17 16 20 20 F 1.35099 * 119.84419 * 179.71696 * 19 18 17 21 21 C 1.38690 * 120.30909 * 359.74128 * 19 18 17 22 22 C 1.37774 * 120.15293 * 0.02765 * 21 19 18 23 23 N 1.40154 * 120.00135 * 105.75478 * 14 12 3 24 24 N 1.40604 * 127.38404 * 173.40918 * 23 14 12 25 25 N 1.28945 * 106.65451 * 180.26467 * 24 23 14 26 26 N 1.28422 * 110.20812 * 359.97438 * 25 24 23 27 27 C 1.30761 * 110.63694 * 0.02562 * 26 25 24 28 28 C 1.50706 * 126.36472 * 179.97438 * 27 26 25 29 29 H 1.08999 * 109.47291 * 300.00539 * 1 2 3 30 30 H 1.09004 * 109.47255 * 60.00715 * 1 2 3 31 31 H 1.09003 * 109.46883 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46977 * 239.99898 * 2 1 3 33 33 H 1.08995 * 109.46844 * 119.99955 * 2 1 3 34 34 H 0.96994 * 119.99661 * 180.02562 * 7 6 4 35 35 H 1.07991 * 119.99875 * 172.31726 * 15 14 12 36 36 H 1.08006 * 120.08077 * 359.97438 * 17 16 15 37 37 H 1.08002 * 119.92350 * 180.25237 * 18 17 16 38 38 H 1.08000 * 119.92453 * 179.97438 * 21 19 18 39 39 H 1.08004 * 120.07788 * 180.02562 * 22 21 19 40 40 H 1.08997 * 109.47257 * 270.63176 * 28 27 26 41 41 H 1.08996 * 109.46840 * 30.63061 * 28 27 26 42 42 H 1.09000 * 109.47085 * 150.62851 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1410 2.0630 1.1787 5 1 2.6640 3.0076 1.2044 6 6 1.5924 1.5400 2.3451 7 7 0.9958 0.3701 2.3231 8 14 1.7042 2.5015 3.9428 9 1 1.0223 3.8108 3.7812 10 1 1.0473 1.7326 5.0302 11 1 3.1313 2.7257 4.2868 12 6 2.3465 1.9799 -1.1620 13 8 2.8392 3.0931 -1.1554 14 6 2.1102 1.2904 -2.4345 15 6 2.9134 0.2646 -2.8089 16 6 4.1185 -0.0477 -2.0280 17 6 4.8415 0.9790 -1.4099 18 6 5.9680 0.6786 -0.6756 19 6 6.3916 -0.6367 -0.5566 20 9 7.5003 -0.9237 0.1601 21 6 5.6828 -1.6585 -1.1705 22 6 4.5519 -1.3729 -1.9038 23 7 1.0539 1.6918 -3.2635 24 7 0.7649 1.2329 -4.5607 25 7 -0.2856 1.8698 -4.9526 26 7 -0.6825 2.6772 -4.0361 27 6 0.0985 2.6064 -2.9898 28 6 -0.0412 3.3984 -1.7152 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.6129 0.0056 3.1363 35 1 2.6678 -0.3230 -3.6810 36 1 4.5154 2.0042 -1.5057 37 1 6.5244 1.4695 -0.1947 38 1 6.0185 -2.6805 -1.0741 39 1 4.0006 -2.1696 -2.3809 40 1 0.5109 4.3337 -1.8063 41 1 -1.0943 3.6142 -1.5352 42 1 0.3586 2.8200 -0.8823 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751107985.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:49 Heat of formation + Delta-G solvation = 103.363317 kcal Electronic energy + Delta-G solvation = -31629.853839 eV Core-core repulsion = 27335.800059 eV Total energy + Delta-G solvation = -4294.053780 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.95141 -44.37990 -41.43745 -39.65156 -37.47719 -36.83500 -34.76308 -33.97127 -33.38919 -32.19493 -31.37254 -30.45862 -29.46039 -27.27761 -26.15448 -24.40937 -23.95710 -23.78468 -23.36632 -22.08088 -20.82503 -19.18678 -18.68500 -18.55844 -17.94480 -17.66952 -17.05217 -16.90613 -16.62814 -16.22340 -16.14684 -15.99285 -15.57892 -15.07291 -14.75890 -14.69422 -14.53773 -14.33137 -14.25399 -14.08411 -13.89166 -13.65795 -13.51004 -13.31984 -13.24583 -13.08155 -12.89982 -12.80113 -12.64865 -12.21472 -12.16245 -12.06100 -11.96238 -11.84372 -11.32908 -10.86003 -10.77460 -10.48621 -10.12460 -9.77369 -9.14434 -8.24932 -5.94033 -0.99684 0.00218 0.26210 0.42360 0.88274 1.10760 1.41300 1.49410 1.55643 1.87962 2.21645 2.58949 2.70020 2.80843 3.08982 3.21747 3.33776 3.48085 3.64367 3.73989 3.83549 3.91342 4.17227 4.23403 4.25457 4.40281 4.41457 4.51173 4.58599 4.74963 4.81545 4.84920 4.89218 4.94090 4.97653 5.08312 5.09894 5.20654 5.30902 5.37125 5.44808 5.56176 5.84267 5.85610 5.98809 6.42782 7.06202 7.18370 7.30703 7.82713 8.57986 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.007932 B = 0.006368 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3529.194841 B = 4395.854344 C = 6819.529348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.116 3.884 3 N -0.400 5.400 4 C -0.324 4.324 5 H 0.090 0.910 6 C 0.011 3.989 7 N -0.862 5.862 8 Si 0.984 3.016 9 H -0.272 1.272 10 H -0.274 1.274 11 H -0.276 1.276 12 C 0.471 3.529 13 O -0.613 6.613 14 C 0.055 3.945 15 C -0.041 4.041 16 C -0.090 4.090 17 C -0.082 4.082 18 C -0.161 4.161 19 C 0.100 3.900 20 F -0.143 7.143 21 C -0.150 4.150 22 C -0.054 4.054 23 N -0.309 5.309 24 N -0.094 5.094 25 N -0.051 5.051 26 N -0.346 5.346 27 C 0.263 3.737 28 C -0.085 4.085 29 H 0.078 0.922 30 H 0.006 0.994 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.106 0.894 34 H 0.276 0.724 35 H 0.168 0.832 36 H 0.130 0.870 37 H 0.136 0.864 38 H 0.170 0.830 39 H 0.173 0.827 40 H 0.106 0.894 41 H 0.124 0.876 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.769 -6.078 -2.478 7.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.006 4.006 3 N -0.114 5.114 4 C -0.452 4.452 5 H 0.108 0.892 6 C -0.193 4.193 7 N -0.500 5.500 8 Si 0.809 3.191 9 H -0.197 1.197 10 H -0.199 1.199 11 H -0.202 1.202 12 C 0.259 3.741 13 O -0.503 6.503 14 C -0.041 4.041 15 C -0.065 4.065 16 C -0.091 4.091 17 C -0.100 4.100 18 C -0.180 4.180 19 C 0.080 3.920 20 F -0.122 7.122 21 C -0.168 4.168 22 C -0.072 4.072 23 N -0.099 5.099 24 N -0.079 5.079 25 N -0.045 5.045 26 N -0.199 5.199 27 C -0.011 4.011 28 C -0.145 4.145 29 H 0.097 0.903 30 H 0.025 0.975 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.124 0.876 34 H 0.087 0.913 35 H 0.186 0.814 36 H 0.147 0.853 37 H 0.154 0.846 38 H 0.187 0.813 39 H 0.191 0.809 40 H 0.124 0.876 41 H 0.142 0.858 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.446 -6.061 -3.577 7.836 hybrid contribution 0.621 0.699 1.617 1.868 sum 4.067 -5.362 -1.961 7.010 Atomic orbital electron populations 1.22070 0.95938 1.00831 0.99942 1.21870 0.95080 0.82048 1.01628 1.43765 1.51169 1.12261 1.04229 1.19721 1.35169 1.05321 0.84963 0.89192 1.25885 0.94863 0.97012 1.01566 1.70168 1.34111 1.16265 1.29443 0.85102 0.78494 0.78311 0.77232 1.19746 1.19859 1.20150 1.16830 0.88156 0.86628 0.82535 1.90690 1.51494 1.21493 1.86574 1.20078 0.90351 1.00597 0.93112 1.22288 0.91653 0.93179 0.99331 1.18804 0.95094 0.94720 1.00456 1.21828 0.93662 1.00609 0.93926 1.21107 0.98894 0.95914 1.02071 1.18097 0.85106 0.94087 0.94686 1.91479 1.50475 1.94262 1.75948 1.21327 0.96215 0.99973 0.99321 1.21465 0.94682 0.94890 0.96122 1.48825 1.20592 1.28213 1.12249 1.82463 1.13560 1.20818 0.91046 1.77883 1.04188 1.02448 1.19983 1.74424 1.25860 1.20697 0.98898 1.26190 0.85208 0.90736 0.98986 1.20857 1.06652 0.99289 0.87662 0.90323 0.97532 0.92564 0.93233 0.87582 0.91322 0.81448 0.85278 0.84599 0.81263 0.80924 0.87607 0.85781 0.89206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.89 9.48 71.98 0.68 -4.20 16 2 C 0.12 4.50 5.09 86.38 0.44 4.94 16 3 N -0.40 -16.99 2.07 -640.12 -1.33 -18.32 16 4 C -0.32 -15.01 9.39 84.14 0.79 -14.22 16 5 H 0.09 4.48 7.19 -2.91 -0.02 4.46 16 6 C 0.01 0.46 5.29 84.97 0.45 0.91 16 7 N -0.86 -36.61 7.18 21.69 0.16 -36.45 16 8 Si 0.98 36.35 29.55 68.60 2.03 38.38 16 9 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 10 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 11 H -0.28 -10.39 7.11 99.48 0.71 -9.69 16 12 C 0.47 19.61 1.26 86.44 0.11 19.72 16 13 O -0.61 -29.07 14.45 -4.48 -0.06 -29.14 16 14 C 0.05 2.01 5.40 39.38 0.21 2.22 16 15 C -0.04 -1.26 8.10 23.93 0.19 -1.07 16 16 C -0.09 -2.63 4.60 -20.16 -0.09 -2.72 16 17 C -0.08 -2.80 8.32 22.58 0.19 -2.61 16 18 C -0.16 -5.02 10.01 22.27 0.22 -4.79 16 19 C 0.10 2.73 7.31 22.49 0.16 2.90 16 20 F -0.14 -3.94 17.26 44.97 0.78 -3.16 16 21 C -0.15 -3.31 10.01 22.27 0.22 -3.09 16 22 C -0.05 -1.19 9.79 22.58 0.22 -0.97 16 23 N -0.31 -11.55 3.85 -175.20 -0.67 -12.22 16 24 N -0.09 -3.42 13.32 37.02 0.49 -2.93 16 25 N -0.05 -1.92 13.39 37.02 0.50 -1.42 16 26 N -0.35 -13.04 12.16 -50.28 -0.61 -13.65 16 27 C 0.26 9.78 8.08 138.05 1.12 10.90 16 28 C -0.08 -2.89 9.03 71.24 0.64 -2.25 16 29 H 0.08 3.28 5.86 -2.39 -0.01 3.26 16 30 H 0.01 0.22 8.14 -2.38 -0.02 0.20 16 31 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.05 1.73 4.91 -2.39 -0.01 1.72 16 33 H 0.11 4.50 5.93 -2.39 -0.01 4.48 16 34 H 0.28 11.19 8.31 -92.71 -0.77 10.42 16 35 H 0.17 4.22 7.76 -2.92 -0.02 4.20 16 36 H 0.13 5.20 4.94 -2.91 -0.01 5.18 16 37 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 38 H 0.17 2.60 8.06 -2.91 -0.02 2.58 16 39 H 0.17 2.55 8.06 -2.91 -0.02 2.52 16 40 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 41 H 0.12 3.46 8.14 -2.39 -0.02 3.44 16 42 H 0.09 3.53 5.18 -2.39 -0.01 3.51 16 Total: -1.00 -53.93 352.50 7.93 -46.00 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: 1.09 Total: 27.25 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 5.56 Total: 5.67 kcal Atomic # 7 Polarization: -83.53 SS G_CDS: -1.47 Total: -84.99 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -0.06 Total: -29.14 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.78 Total: -3.16 kcal Atomic # 14 Polarization: 36.35 SS G_CDS: 2.03 Total: 38.38 kcal Total: -53.93 7.93 -46.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751107985.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.362 kcal (2) G-P(sol) polarization free energy of solvation -53.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds