Wall clock time and date at job start Wed Apr 1 2020 02:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47241 * 2 1 4 4 H 1.08998 * 109.46833 * 54.99643 * 3 2 1 5 5 C 1.50692 * 109.47134 * 174.99914 * 3 2 1 6 6 H 1.08004 * 120.00205 * 120.00403 * 5 3 2 7 7 C 1.37876 * 120.00469 * 299.99843 * 5 3 2 8 8 N 1.31511 * 120.00557 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 119.99643 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.46919 * 90.00228 * 9 7 5 11 11 H 1.48495 * 109.47105 * 209.99667 * 9 7 5 12 12 H 1.48497 * 109.47151 * 330.00273 * 9 7 5 13 13 N 1.46504 * 109.46778 * 295.00176 * 3 2 1 14 14 C 1.34773 * 119.99895 * 84.99697 * 13 3 2 15 15 O 1.21277 * 120.00179 * 0.02562 * 14 13 3 16 16 C 1.50708 * 119.99677 * 179.97438 * 14 13 3 17 17 O 1.42899 * 109.47040 * 180.02562 * 16 14 13 18 18 C 1.35739 * 117.00210 * 180.02562 * 17 16 14 19 19 C 1.39378 * 119.72801 * 359.97438 * 18 17 16 20 20 C 1.36456 * 120.42984 * 180.02562 * 19 18 17 21 21 C 1.39961 * 119.79740 * 359.97438 * 20 19 18 22 22 C 1.46442 * 120.98760 * 180.02562 * 21 20 19 23 23 C 1.50692 * 120.90209 * 359.97438 * 22 21 20 24 24 C 1.35846 * 118.19195 * 179.97438 * 22 21 20 25 25 C 1.41008 * 119.82717 * 0.02562 * 24 22 21 26 26 O 1.21794 * 119.15648 * 180.02562 * 25 24 22 27 27 O 1.34224 * 121.68474 * 359.71455 * 25 24 22 28 28 C 1.35029 * 121.46423 * 0.57568 * 27 25 24 29 29 C 1.38516 * 119.73010 * 180.02562 * 18 17 16 30 30 H 1.09003 * 109.46924 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47143 * 300.00215 * 1 2 3 32 32 H 1.09003 * 109.46917 * 60.00022 * 1 2 3 33 33 H 1.09003 * 109.47607 * 240.00383 * 2 1 3 34 34 H 1.08997 * 109.47532 * 119.99659 * 2 1 3 35 35 H 0.97002 * 120.00422 * 180.02562 * 8 7 5 36 36 H 0.97003 * 119.99782 * 264.99761 * 13 3 2 37 37 H 1.08997 * 109.46636 * 60.00466 * 16 14 13 38 38 H 1.09002 * 109.46870 * 300.00275 * 16 14 13 39 39 H 1.08004 * 119.78381 * 359.97438 * 19 18 17 40 40 H 1.08004 * 120.09999 * 179.97438 * 20 19 18 41 41 H 1.08998 * 109.47560 * 90.00462 * 23 22 21 42 42 H 1.09007 * 109.47132 * 210.00413 * 23 22 21 43 43 H 1.08996 * 109.47395 * 329.99966 * 23 22 21 44 44 H 1.08000 * 120.08776 * 179.97438 * 24 22 21 45 45 H 1.07991 * 120.10724 * 359.97438 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4443 0.1238 6 1 4.1472 1.8890 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 5.4539 0.8805 1.3363 9 14 3.0963 0.1090 2.5701 10 1 2.8756 -1.3272 2.2634 11 1 3.7936 0.2348 3.8751 12 1 1.7876 0.8073 2.6386 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6643 -1.3670 15 8 -0.3393 2.6326 -0.4341 16 6 0.0366 3.3386 -2.6545 17 8 -1.2886 3.8585 -2.5297 18 6 -1.8030 4.5006 -3.6093 19 6 -1.0387 4.6254 -4.7681 20 6 -1.5414 5.2685 -5.8617 21 6 -2.8331 5.8059 -5.8198 22 6 -3.3986 6.5006 -6.9782 23 6 -2.6051 6.6577 -8.2497 24 6 -4.6579 6.9997 -6.8755 25 6 -5.3797 6.8402 -5.6747 26 8 -6.5080 7.2920 -5.5961 27 8 -4.8574 6.1978 -4.6182 28 6 -3.6095 5.6834 -4.6525 29 6 -3.0828 5.0272 -3.5500 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 5.8770 0.4820 2.1129 36 1 2.2719 2.1232 -1.9978 37 1 0.0679 2.6144 -3.4686 38 1 0.7280 4.1541 -2.8667 39 1 -0.0418 4.2112 -4.8005 40 1 -0.9443 5.3626 -6.7567 41 1 -2.7945 5.8065 -8.9037 42 1 -2.9045 7.5767 -8.7536 43 1 -1.5425 6.7035 -8.0115 44 1 -5.1047 7.5179 -7.7110 45 1 -3.6686 4.9268 -2.6484 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762720082.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:49 Heat of formation + Delta-G solvation = -97.858670 kcal Electronic energy + Delta-G solvation = -29039.242438 eV Core-core repulsion = 24795.337821 eV Total energy + Delta-G solvation = -4243.904617 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.24701 -40.53353 -39.26204 -38.27918 -37.25185 -35.64497 -35.26999 -32.59124 -31.85808 -31.43619 -29.89503 -29.34433 -28.57792 -27.17717 -24.51917 -23.80331 -22.80791 -22.37227 -21.17252 -19.93298 -19.80998 -18.71692 -17.96904 -17.72555 -17.10219 -16.98669 -16.54394 -16.26145 -15.61316 -15.43547 -15.41885 -14.76241 -14.49788 -14.41500 -14.22442 -14.12149 -14.04867 -13.63543 -13.46752 -13.13631 -13.06191 -12.81525 -12.65245 -12.27856 -12.14995 -12.00592 -11.88782 -11.60668 -11.47766 -11.16395 -10.99535 -10.71592 -10.62370 -10.20995 -10.01845 -9.67260 -9.36251 -9.28706 -9.27002 -8.85359 -8.45479 -8.25322 -6.29924 -4.33567 -0.14722 0.60392 1.14987 1.87542 2.46402 2.66467 2.92968 3.17486 3.25786 3.30419 3.34560 3.71467 3.80796 3.86190 3.97987 4.23416 4.23920 4.39780 4.64620 4.68669 4.78431 4.85677 4.89780 4.92440 5.03895 5.05695 5.14671 5.23955 5.32258 5.44233 5.62942 5.69338 5.77860 5.86967 5.87674 5.94000 6.08119 6.54539 6.60909 6.72283 6.80982 6.85316 6.87418 7.11493 7.16955 7.17139 7.38136 7.98509 8.35096 8.62031 8.73034 9.29985 10.81781 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.026234 B = 0.001950 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.059794 B =14352.698372 C =15033.276727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.245 3.755 4 H 0.051 0.949 5 C -0.538 4.538 6 H 0.081 0.919 7 C 0.080 3.920 8 N -0.890 5.890 9 Si 0.882 3.118 10 H -0.275 1.275 11 H -0.293 1.293 12 H -0.260 1.260 13 N -0.695 5.695 14 C 0.504 3.496 15 O -0.524 6.524 16 C 0.035 3.965 17 O -0.274 6.274 18 C 0.197 3.803 19 C -0.228 4.228 20 C -0.012 4.012 21 C -0.201 4.201 22 C 0.046 3.954 23 C -0.129 4.129 24 C -0.274 4.274 25 C 0.513 3.487 26 O -0.470 6.470 27 O -0.270 6.270 28 C 0.192 3.808 29 C -0.176 4.176 30 H 0.033 0.967 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.268 0.732 36 H 0.396 0.604 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.161 0.839 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.853 8.659 -20.645 25.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C 0.142 3.858 4 H 0.069 0.931 5 C -0.576 4.576 6 H 0.099 0.901 7 C -0.124 4.124 8 N -0.526 5.526 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.345 5.345 14 C 0.287 3.713 15 O -0.400 6.400 16 C -0.044 4.044 17 O -0.185 6.185 18 C 0.149 3.851 19 C -0.247 4.247 20 C -0.030 4.030 21 C -0.202 4.202 22 C 0.045 3.955 23 C -0.185 4.185 24 C -0.293 4.293 25 C 0.363 3.637 26 O -0.359 6.359 27 O -0.182 6.182 28 C 0.146 3.854 29 C -0.195 4.195 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.230 0.770 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.162 0.838 40 H 0.161 0.839 41 H 0.110 0.890 42 H 0.102 0.898 43 H 0.100 0.900 44 H 0.178 0.822 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -12.978 8.739 -19.427 24.944 hybrid contribution 0.174 -0.498 0.102 0.537 sum -12.804 8.241 -19.325 24.603 Atomic orbital electron populations 1.21885 0.96853 0.99234 1.02255 1.22305 0.94387 0.99820 1.01312 1.19208 0.95780 0.88514 0.82293 0.93102 1.20999 0.88385 1.40209 1.08014 0.90103 1.24826 0.94889 0.95069 0.97657 1.69854 1.08688 1.44204 1.29861 0.86913 0.80981 0.79992 0.80949 1.20163 1.22057 1.18408 1.46044 1.14068 1.55905 1.18450 1.19738 0.83328 0.80067 0.88213 1.90744 1.51059 1.58486 1.39732 1.22801 0.82664 0.99608 0.99292 1.86192 1.30630 1.67474 1.34158 1.18845 0.91382 0.88825 0.86035 1.21149 1.02317 1.07538 0.93698 1.20677 0.92371 0.91913 0.98052 1.18891 0.97289 1.09885 0.94099 1.21494 0.92872 0.87385 0.93759 1.21025 1.00213 1.03954 0.93325 1.22297 0.96534 1.10938 0.99539 1.19176 0.86500 0.76262 0.81793 1.90982 1.17919 1.45259 1.81700 1.83558 1.28608 1.61970 1.44052 1.18496 0.81266 0.92370 0.93235 1.19485 0.95115 1.05305 0.99561 0.94797 0.92771 0.93071 0.92171 0.92591 0.92163 0.77018 0.88742 0.88587 0.83778 0.83856 0.89046 0.89798 0.89958 0.82180 0.82732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 8.51 37.15 0.32 -2.45 16 2 C -0.14 -2.91 5.11 -26.73 -0.14 -3.04 16 3 C 0.24 5.39 1.83 -69.08 -0.13 5.26 16 4 H 0.05 1.26 6.64 -51.93 -0.34 0.91 16 5 C -0.54 -13.65 9.31 -34.44 -0.32 -13.98 16 6 H 0.08 2.14 7.98 -52.48 -0.42 1.72 16 7 C 0.08 2.14 5.45 -17.82 -0.10 2.05 16 8 N -0.89 -25.36 13.96 55.43 0.77 -24.59 16 9 Si 0.88 20.95 24.41 -169.99 -4.15 16.80 16 10 H -0.27 -6.33 6.83 56.52 0.39 -5.94 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.26 -6.12 6.53 56.52 0.37 -5.75 16 13 N -0.69 -11.98 5.02 -54.93 -0.28 -12.25 16 14 C 0.50 8.28 6.47 -10.98 -0.07 8.21 16 15 O -0.52 -10.85 13.64 -14.35 -0.20 -11.05 16 16 C 0.03 0.38 5.21 36.01 0.19 0.57 16 17 O -0.27 -3.53 9.65 -38.83 -0.37 -3.90 16 18 C 0.20 2.05 6.69 -39.05 -0.26 1.78 16 19 C -0.23 -1.69 8.96 -39.80 -0.36 -2.04 16 20 C -0.01 -0.08 9.36 -39.58 -0.37 -0.45 16 21 C -0.20 -1.64 5.87 -105.01 -0.62 -2.25 16 22 C 0.05 0.30 6.08 -102.18 -0.62 -0.32 16 23 C -0.13 -0.37 9.64 36.00 0.35 -0.02 16 24 C -0.27 -2.27 9.62 -39.39 -0.38 -2.65 16 25 C 0.51 6.19 7.89 31.78 0.25 6.44 16 26 O -0.47 -7.13 17.91 -19.60 -0.35 -7.48 16 27 O -0.27 -3.34 9.82 -20.81 -0.20 -3.54 16 28 C 0.19 2.03 6.76 -38.48 -0.26 1.77 16 29 C -0.18 -1.90 9.94 -39.31 -0.39 -2.29 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 1.11 7.85 -51.93 -0.41 0.70 16 32 H 0.05 0.94 5.65 -51.93 -0.29 0.65 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.06 1.24 3.21 -51.93 -0.17 1.08 16 35 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.40 5.65 8.54 -40.82 -0.35 5.30 16 37 H 0.09 0.74 7.64 -51.93 -0.40 0.34 16 38 H 0.10 0.79 7.64 -51.93 -0.40 0.39 16 39 H 0.14 0.73 6.25 -52.48 -0.33 0.40 16 40 H 0.14 0.42 6.53 -52.48 -0.34 0.08 16 41 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 42 H 0.08 0.16 8.10 -51.92 -0.42 -0.26 16 43 H 0.08 0.14 6.62 -51.93 -0.34 -0.20 16 44 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 45 H 0.15 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 369.05 15.07 5.56 5.56 Total: -1.00 -34.07 369.05 -7.63 -41.70 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -5.50 Total: 2.18 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -2.91 Total: -3.42 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.50 Total: -36.84 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -1.13 Total: -25.98 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.15 Total: 16.80 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.07 -7.63 -41.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762720082.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.161 kcal (2) G-P(sol) polarization free energy of solvation -34.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds