Wall clock time and date at job start Wed Apr 1 2020 03:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47721 * 2 1 4 4 O 1.45205 * 109.47066 * 239.99709 * 2 1 3 5 5 C 1.34234 * 116.99590 * 90.00397 * 4 2 1 6 6 O 1.20828 * 119.99947 * 0.02562 * 5 4 2 7 7 C 1.50691 * 119.99601 * 180.02562 * 5 4 2 8 8 C 1.53841 * 113.66113 * 81.00127 * 7 5 4 9 9 C 1.51872 * 86.65464 * 139.30643 * 8 7 5 10 10 O 1.20761 * 135.78998 * 154.84064 * 9 8 7 11 11 C 1.51574 * 88.43413 * 334.84666 * 9 8 7 12 12 C 1.50700 * 109.46860 * 120.00285 * 2 1 3 13 13 O 1.21293 * 119.99961 * 104.12522 * 12 2 1 14 14 N 1.34778 * 120.00162 * 284.12242 * 12 2 1 15 15 C 1.46502 * 119.99904 * 6.60571 * 14 12 2 16 16 C 1.50699 * 109.47207 * 94.69427 * 15 14 12 17 17 H 1.07999 * 120.00257 * 359.97438 * 16 15 14 18 18 C 1.37883 * 119.99604 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00203 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99681 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47171 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46828 * 120.00150 * 20 18 16 23 23 H 1.48494 * 109.47363 * 239.99919 * 20 18 16 24 24 C 1.39922 * 120.00089 * 186.59919 * 14 12 2 25 25 C 1.38876 * 120.07003 * 187.03748 * 24 14 12 26 26 C 1.38115 * 119.93014 * 179.76485 * 25 24 14 27 27 C 1.38281 * 120.06488 * 0.49210 * 26 25 24 28 28 C 1.38281 * 120.14655 * 359.76241 * 27 26 25 29 29 C 1.38113 * 120.06760 * 0.02562 * 28 27 26 30 30 H 1.09000 * 109.47336 * 172.84169 * 1 2 3 31 31 H 1.09004 * 109.46765 * 292.84407 * 1 2 3 32 32 H 1.08996 * 109.46903 * 52.83890 * 1 2 3 33 33 H 1.08995 * 112.88896 * 309.66169 * 7 5 4 34 34 H 1.09002 * 113.66805 * 253.82537 * 8 7 5 35 35 H 1.08997 * 113.66509 * 24.89450 * 8 7 5 36 36 H 1.09002 * 113.66941 * 270.68847 * 11 9 8 37 37 H 1.09003 * 113.67284 * 139.61028 * 11 9 8 38 38 H 1.08999 * 109.46977 * 214.69756 * 15 14 12 39 39 H 1.09010 * 109.46913 * 334.69428 * 15 14 12 40 40 H 0.96999 * 120.00121 * 180.02562 * 19 18 16 41 41 H 1.08002 * 120.03588 * 359.97438 * 25 24 14 42 42 H 1.07993 * 119.96704 * 180.24999 * 26 25 24 43 43 H 1.08003 * 119.92205 * 179.74356 * 27 26 25 44 44 H 1.08000 * 119.96225 * 179.97438 * 28 27 26 45 45 H 1.08003 * 120.03137 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6846 -1.1856 5 6 2.2172 0.0640 -2.2811 6 8 1.9983 1.2519 -2.2503 7 6 2.7182 -0.5773 -3.5494 8 6 1.6150 -1.2674 -4.3699 9 6 2.2945 -0.6930 -5.6006 10 8 2.3569 -0.9852 -6.7707 11 6 2.8607 0.4062 -4.7239 12 6 2.0323 -0.7105 1.2304 13 8 2.4761 -1.8358 1.1422 14 7 1.9884 -0.0954 2.4289 15 6 1.3223 1.2026 2.5621 16 6 -0.1003 0.9933 3.0131 17 1 -0.4714 -0.0066 3.1831 18 6 -0.9284 2.0784 3.2077 19 7 -0.4770 3.2960 2.9992 20 14 -2.6921 1.8190 3.7661 21 1 -2.9513 0.3658 3.9281 22 1 -2.9065 2.5074 5.0643 23 1 -3.6201 2.3777 2.7504 24 6 2.5788 -0.6967 3.5459 25 6 2.4101 -0.1394 4.8067 26 6 2.9901 -0.7381 5.9080 27 6 3.7467 -1.8853 5.7546 28 6 3.9210 -2.4397 4.4999 29 6 3.3400 -1.8484 3.3953 30 1 -0.3634 -1.0196 -0.1281 31 1 -0.3633 0.3990 0.9471 32 1 -0.3633 0.6208 -0.8190 33 1 3.5991 -1.1992 -3.3906 34 1 1.6472 -2.3557 -4.3182 35 1 0.6188 -0.8627 -4.1912 36 1 2.2132 1.2795 -4.6442 37 1 3.8941 0.6631 -4.9566 38 1 1.8513 1.8086 3.2976 39 1 1.3268 1.7138 1.5993 40 1 -1.0595 4.0593 3.1365 41 1 1.8231 0.7592 4.9264 42 1 2.8559 -0.3075 6.8892 43 1 4.2027 -2.3492 6.6168 44 1 4.5129 -3.3356 4.3835 45 1 3.4768 -2.2817 2.4155 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765407648.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:14 Heat of formation + Delta-G solvation = -95.922990 kcal Electronic energy + Delta-G solvation = -30305.719588 eV Core-core repulsion = 26061.898908 eV Total energy + Delta-G solvation = -4243.820680 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.37438 -41.71011 -40.58236 -39.30253 -37.91588 -37.11681 -36.95334 -34.69745 -33.28128 -31.73728 -30.58142 -29.29104 -27.48948 -27.16835 -25.69650 -25.28518 -23.68550 -22.83731 -21.83466 -20.71235 -20.05965 -19.34029 -18.75640 -18.32469 -18.06148 -17.75399 -17.38888 -16.92657 -16.79582 -16.54111 -16.27512 -16.03181 -15.81427 -15.20088 -15.08748 -14.78244 -14.58811 -14.36295 -14.31063 -14.13575 -13.83450 -13.71373 -13.48641 -13.43970 -13.24713 -12.89847 -12.73989 -12.62644 -12.54735 -12.39703 -12.36973 -12.26472 -12.00023 -11.89056 -11.80235 -11.59576 -10.95243 -10.67768 -10.55431 -10.32563 -9.75359 -8.81697 -8.25686 -6.40505 0.36201 0.58734 0.69512 0.97270 1.22171 1.39256 1.42570 1.48488 1.55443 2.14442 2.37860 2.69617 3.03095 3.04821 3.13134 3.21575 3.53362 3.62841 3.77877 3.87702 3.94398 4.09882 4.13424 4.21374 4.41567 4.49134 4.53043 4.62552 4.65436 4.66528 4.67623 4.73917 4.80849 4.93143 4.94878 5.03030 5.24684 5.27921 5.33828 5.45448 5.61525 5.63652 5.69893 5.77305 5.89718 6.28093 6.32641 6.33785 6.54746 6.68285 6.95890 7.28934 8.78755 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009709 B = 0.003450 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2883.377779 B = 8114.872655 C =10350.379947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.088 3.912 3 H 0.102 0.898 4 O -0.334 6.334 5 C 0.472 3.528 6 O -0.524 6.524 7 C -0.095 4.095 8 C -0.167 4.167 9 C 0.375 3.625 10 O -0.455 6.455 11 C -0.167 4.167 12 C 0.517 3.483 13 O -0.535 6.535 14 N -0.535 5.535 15 C 0.238 3.762 16 C -0.538 4.538 17 H 0.056 0.944 18 C 0.034 3.966 19 N -0.910 5.910 20 Si 0.951 3.049 21 H -0.271 1.271 22 H -0.278 1.278 23 H -0.276 1.276 24 C 0.137 3.863 25 C -0.159 4.159 26 C -0.102 4.102 27 C -0.146 4.146 28 C -0.104 4.104 29 C -0.189 4.189 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.160 0.840 34 H 0.127 0.873 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.123 0.877 38 H 0.031 0.969 39 H 0.041 0.959 40 H 0.271 0.729 41 H 0.120 0.880 42 H 0.146 0.854 43 H 0.153 0.847 44 H 0.147 0.853 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.417 -7.513 -6.145 11.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.030 3.970 3 H 0.120 0.880 4 O -0.250 6.250 5 C 0.316 3.684 6 O -0.413 6.413 7 C -0.114 4.114 8 C -0.205 4.205 9 C 0.251 3.749 10 O -0.328 6.328 11 C -0.204 4.204 12 C 0.306 3.694 13 O -0.415 6.415 14 N -0.255 5.255 15 C 0.119 3.881 16 C -0.576 4.576 17 H 0.074 0.926 18 C -0.168 4.168 19 N -0.548 5.548 20 Si 0.777 3.223 21 H -0.195 1.195 22 H -0.204 1.204 23 H -0.201 1.201 24 C 0.042 3.958 25 C -0.179 4.179 26 C -0.121 4.121 27 C -0.165 4.165 28 C -0.123 4.123 29 C -0.208 4.208 30 H 0.091 0.909 31 H 0.126 0.874 32 H 0.094 0.906 33 H 0.178 0.822 34 H 0.145 0.855 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.141 0.859 38 H 0.049 0.951 39 H 0.059 0.941 40 H 0.080 0.920 41 H 0.138 0.862 42 H 0.163 0.837 43 H 0.170 0.830 44 H 0.165 0.835 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 6.512 -7.641 -6.851 12.155 hybrid contribution -1.147 0.737 0.621 1.498 sum 5.365 -6.904 -6.230 10.736 Atomic orbital electron populations 1.22440 0.90345 1.03706 1.06853 1.22308 0.97347 0.96145 0.81237 0.88049 1.86578 1.76615 1.42049 1.19723 1.24002 0.73517 0.85553 0.85378 1.90699 1.48666 1.17600 1.84313 1.22230 1.02528 1.00238 0.86363 1.24106 0.99795 1.04961 0.91615 1.25584 0.76774 0.85742 0.86800 1.90448 1.55873 1.68280 1.18152 1.24082 1.06402 0.99162 0.90778 1.20420 0.78288 0.85965 0.84713 1.90361 1.46523 1.18721 1.85893 1.45821 1.51130 1.22163 1.06402 1.19509 0.92168 0.78049 0.98405 1.21339 0.95954 0.93132 1.47127 0.92624 1.25525 1.02106 0.94515 0.94670 1.69997 1.37944 0.98748 1.48097 0.85597 0.80094 0.78404 0.78245 1.19502 1.20409 1.20124 1.18322 0.95488 0.94888 0.87080 1.21134 1.03086 1.02302 0.91420 1.21242 0.96660 0.96007 0.98167 1.21440 1.00412 0.96567 0.98088 1.21378 0.98818 1.00059 0.92019 1.22416 0.99291 0.96263 1.02869 0.90893 0.87438 0.90571 0.82220 0.85480 0.85103 0.85085 0.85918 0.95076 0.94095 0.91995 0.86248 0.83670 0.82977 0.83546 0.82547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.30 9.28 71.98 0.67 -5.63 16 2 C 0.09 3.22 2.14 29.85 0.06 3.28 16 3 H 0.10 3.93 5.81 -2.39 -0.01 3.92 16 4 O -0.33 -10.56 9.47 -45.25 -0.43 -10.99 16 5 C 0.47 12.42 7.46 71.23 0.53 12.95 16 6 O -0.52 -16.72 15.13 21.96 0.33 -16.39 16 7 C -0.09 -1.51 4.27 -11.03 -0.05 -1.56 16 8 C -0.17 -2.23 7.62 30.51 0.23 -1.99 16 9 C 0.38 6.09 9.15 29.70 0.27 6.36 16 10 O -0.45 -10.66 17.99 -1.45 -0.03 -10.68 16 11 C -0.17 -2.37 7.37 30.41 0.22 -2.15 16 12 C 0.52 21.26 6.89 87.66 0.60 21.86 16 13 O -0.54 -22.81 13.10 15.20 0.20 -22.61 16 14 N -0.53 -22.93 2.69 -635.29 -1.71 -24.64 16 15 C 0.24 10.99 4.03 85.63 0.34 11.33 16 16 C -0.54 -26.14 6.30 25.60 0.16 -25.98 16 17 H 0.06 2.81 7.81 -2.91 -0.02 2.79 16 18 C 0.03 1.68 5.46 84.66 0.46 2.14 16 19 N -0.91 -47.24 13.29 21.45 0.28 -46.96 16 20 Si 0.95 39.69 29.54 68.60 2.03 41.71 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 22 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 23 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 24 C 0.14 5.59 6.47 38.15 0.25 5.84 16 25 C -0.16 -6.09 9.04 22.39 0.20 -5.89 16 26 C -0.10 -3.10 10.04 22.25 0.22 -2.88 16 27 C -0.15 -3.89 10.04 22.29 0.22 -3.67 16 28 C -0.10 -3.07 10.04 22.25 0.22 -2.84 16 29 C -0.19 -7.01 8.97 22.39 0.20 -6.81 16 30 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.11 4.46 4.38 -2.38 -0.01 4.45 16 32 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.16 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.13 1.67 8.09 -2.39 -0.02 1.65 16 36 H 0.13 2.06 7.45 -2.39 -0.02 2.04 16 37 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.03 1.53 6.81 -2.39 -0.02 1.51 16 39 H 0.04 1.94 5.65 -2.38 -0.01 1.93 16 40 H 0.27 13.35 8.31 -92.71 -0.77 12.58 16 41 H 0.12 5.02 6.16 -2.91 -0.02 5.00 16 42 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 43 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 44 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 45 H 0.16 6.20 4.73 -44.78 -0.21 5.99 16 Total: -1.00 -63.64 377.18 6.36 -57.28 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: 0.84 Total: 28.91 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: 4.84 Total: 4.37 kcal Atomic # 7 Polarization: -70.17 SS G_CDS: -1.42 Total: -71.59 kcal Atomic # 8 Polarization: -60.75 SS G_CDS: 0.08 Total: -60.68 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.71 kcal Total: -63.64 6.36 -57.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765407648.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.641 kcal (2) G-P(sol) polarization free energy of solvation -63.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds