Wall clock time and date at job start Wed Apr 1 2020 03:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42905 * 109.47131 * 2 1 4 4 C 1.42894 * 114.00293 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.47382 * 180.02562 * 4 3 2 6 6 O 1.20821 * 119.99861 * 0.02562 * 5 4 3 7 7 O 1.34223 * 119.99850 * 180.02562 * 5 4 3 8 8 C 1.45203 * 117.00087 * 179.97438 * 7 5 4 9 9 C 1.50691 * 109.47466 * 180.02562 * 8 7 5 10 10 O 1.21398 * 120.00150 * 359.97438 * 9 8 7 11 11 C 1.41733 * 120.00205 * 180.02562 * 9 8 7 12 12 C 1.37862 * 126.91018 * 0.02562 * 11 9 8 13 13 N 1.34666 * 109.62237 * 179.97438 * 12 11 9 14 14 C 1.46499 * 124.64683 * 180.02562 * 13 12 11 15 15 C 1.50705 * 109.46980 * 264.95484 * 14 13 12 16 16 H 1.07998 * 119.99626 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99870 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99692 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00344 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.46870 * 89.99833 * 19 17 15 21 21 H 1.48499 * 109.47370 * 210.00091 * 19 17 15 22 22 H 1.48502 * 109.47042 * 330.00220 * 19 17 15 23 23 C 1.38023 * 110.70753 * 359.97438 * 13 12 11 24 24 C 1.39142 * 133.03684 * 179.97438 * 23 13 12 25 25 C 1.37777 * 119.94271 * 180.02562 * 24 23 13 26 26 C 1.38718 * 120.64122 * 0.02562 * 25 24 23 27 27 C 1.37805 * 120.26774 * 359.97438 * 26 25 24 28 28 C 1.39191 * 119.66997 * 0.02562 * 27 26 25 29 29 H 1.08997 * 109.47705 * 299.99997 * 1 2 3 30 30 H 1.09005 * 109.46999 * 59.99646 * 1 2 3 31 31 H 1.09001 * 109.46930 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47401 * 240.00711 * 2 1 3 33 33 H 1.08999 * 109.46842 * 119.99924 * 2 1 3 34 34 H 1.09002 * 109.47039 * 59.99928 * 4 3 2 35 35 H 1.09000 * 109.47441 * 300.00390 * 4 3 2 36 36 H 1.09004 * 109.46779 * 59.99685 * 8 7 5 37 37 H 1.09003 * 109.47169 * 300.00933 * 8 7 5 38 38 H 1.08002 * 125.19186 * 359.93331 * 12 11 9 39 39 H 1.08999 * 109.47025 * 24.95556 * 14 13 12 40 40 H 1.08994 * 109.47161 * 144.95658 * 14 13 12 41 41 H 0.97006 * 119.99376 * 179.97438 * 18 17 15 42 42 H 1.07999 * 120.02756 * 0.02778 * 24 23 13 43 43 H 1.08002 * 119.67763 * 180.02562 * 25 24 23 44 44 H 1.08004 * 119.86821 * 179.97438 * 26 25 24 45 45 H 1.07997 * 120.16366 * 179.72179 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8194 2.9163 0.0012 6 8 2.9642 3.7697 0.0016 7 8 5.1155 3.2649 0.0013 8 6 5.4161 4.6855 0.0012 9 6 6.9100 4.8830 0.0007 10 8 7.6495 3.9203 0.0008 11 6 7.4517 6.1927 0.0012 12 6 6.7496 7.3791 0.0026 13 7 7.6109 8.4144 0.0031 14 6 7.2171 9.8254 0.0051 15 6 7.2013 10.3445 -1.4096 16 1 7.4592 9.6890 -2.2282 17 6 6.8575 11.6563 -1.6588 18 7 6.8432 12.1091 -2.8934 19 14 6.4121 12.7903 -0.2428 20 1 7.6374 13.4660 0.2545 21 1 5.4402 13.8103 -0.7123 22 1 5.8045 11.9961 0.8551 23 6 8.9155 7.9638 0.0027 24 6 10.1451 8.6151 0.0025 25 6 11.3116 7.8820 0.0015 26 6 11.2752 6.4953 0.0002 27 6 10.0671 5.8323 0.0003 28 6 8.8812 6.5609 0.0013 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8340 0.9765 -0.8892 35 1 3.8333 0.9768 0.8908 36 1 4.9884 5.1473 0.8912 37 1 4.9885 5.1474 -0.8887 38 1 5.6730 7.4653 0.0025 39 1 6.2223 9.9244 0.4396 40 1 7.9302 10.4008 0.5953 41 1 6.6010 13.0320 -3.0687 42 1 10.1849 9.6944 0.0032 43 1 12.2636 8.3920 0.0018 44 1 12.1973 5.9331 -0.0010 45 1 10.0407 4.7526 -0.0053 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765839277.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:45 Heat of formation + Delta-G solvation = -104.932357 kcal Electronic energy + Delta-G solvation = -28692.562790 eV Core-core repulsion = 24448.351434 eV Total energy + Delta-G solvation = -4244.211356 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.21339 -40.63133 -38.73532 -38.11316 -36.80424 -36.29902 -33.64073 -32.17694 -32.00757 -30.24814 -30.00054 -28.71035 -28.09233 -26.77237 -23.54907 -23.21121 -22.78289 -21.89788 -21.16040 -20.43448 -18.89126 -17.99435 -17.34392 -17.22377 -17.21953 -16.62994 -16.37982 -16.19399 -15.95260 -15.23543 -14.96091 -14.84610 -14.53499 -14.31101 -13.94308 -13.62177 -13.60611 -13.42475 -13.29695 -12.84257 -12.73734 -12.60707 -12.57606 -12.22337 -12.14765 -11.82025 -11.70246 -11.67640 -11.33062 -11.09064 -10.89061 -10.83968 -10.60302 -10.54647 -10.28017 -10.15406 -9.84451 -9.42279 -9.16606 -8.96324 -7.89393 -7.29134 -6.44035 -4.50883 1.16803 1.82737 1.99971 2.00949 2.19690 3.01585 3.07244 3.10428 3.31252 3.46986 3.52958 4.04961 4.18994 4.30958 4.56848 4.60957 4.71033 4.78205 4.82882 4.83237 4.93882 4.97168 5.08117 5.11744 5.16356 5.26136 5.32449 5.40663 5.50717 5.56654 5.74296 5.81252 5.93396 5.97890 6.10567 6.18179 6.20353 6.26686 6.45746 6.58988 6.79197 6.93499 7.02143 7.04803 7.16904 7.54607 7.57320 7.59389 7.94793 8.08232 8.59382 9.09604 10.67753 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010244 B = 0.002475 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.527214 B =11311.900386 C =13654.132466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.370 6.370 4 C 0.074 3.926 5 C 0.459 3.541 6 O -0.487 6.487 7 O -0.335 6.335 8 C 0.023 3.977 9 C 0.434 3.566 10 O -0.465 6.465 11 C -0.310 4.310 12 C 0.159 3.841 13 N -0.418 5.418 14 C 0.198 3.802 15 C -0.554 4.554 16 H 0.084 0.916 17 C 0.082 3.918 18 N -0.879 5.879 19 Si 0.873 3.127 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.264 1.264 23 C 0.086 3.914 24 C -0.099 4.099 25 C -0.119 4.119 26 C -0.139 4.139 27 C -0.083 4.083 28 C -0.053 4.053 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.178 0.822 39 H 0.052 0.948 40 H 0.045 0.955 41 H 0.271 0.729 42 H 0.125 0.875 43 H 0.122 0.878 44 H 0.119 0.881 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.910 -18.544 7.930 20.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.289 6.289 4 C -0.004 4.004 5 C 0.300 3.700 6 O -0.373 6.373 7 O -0.251 6.251 8 C -0.051 4.051 9 C 0.315 3.685 10 O -0.343 6.343 11 C -0.318 4.318 12 C 0.017 3.983 13 N -0.091 5.091 14 C 0.079 3.921 15 C -0.591 4.591 16 H 0.102 0.898 17 C -0.123 4.123 18 N -0.514 5.514 19 Si 0.699 3.301 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.189 1.189 23 C -0.018 4.018 24 C -0.119 4.119 25 C -0.138 4.138 26 C -0.158 4.158 27 C -0.101 4.101 28 C -0.057 4.057 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.195 0.805 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.081 0.919 42 H 0.143 0.857 43 H 0.140 0.860 44 H 0.137 0.863 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.985 -18.027 7.801 20.043 hybrid contribution -0.361 0.960 0.437 1.115 sum -4.346 -17.067 8.238 19.443 Atomic orbital electron populations 1.21745 0.93169 1.02407 1.03598 1.22583 0.96052 0.82641 1.00590 1.87974 1.18094 1.27220 1.95618 1.21620 0.83820 0.90525 1.04418 1.23203 0.81100 0.92121 0.73602 1.90713 1.50927 1.52011 1.43632 1.86513 1.26621 1.28098 1.83898 1.23541 0.97697 0.78748 1.05147 1.19506 0.87905 0.87880 0.73174 1.90524 1.61859 1.42880 1.39020 1.19259 0.92738 0.92557 1.27275 1.22593 0.96314 0.85883 0.93501 1.44209 1.03944 1.08277 1.52634 1.20328 0.97205 0.74332 1.00262 1.21115 1.49895 0.97645 0.90492 0.89827 1.24825 0.94145 0.97533 0.95823 1.69866 1.45993 1.16609 1.18978 0.86900 0.79332 0.81386 0.82473 1.19559 1.20343 1.18876 1.18294 0.85542 0.92571 1.05431 1.20198 0.89316 0.99984 1.02412 1.20735 0.97020 0.93889 1.02159 1.20888 0.97198 0.94256 1.03433 1.20504 0.90274 0.99734 0.99628 1.18742 0.92022 0.91573 1.03334 0.91612 0.91575 0.90776 0.92791 0.92829 0.88662 0.88720 0.87975 0.87760 0.80521 0.93039 0.93744 0.91858 0.85696 0.86044 0.86332 0.85607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.28 37.16 0.38 -0.54 16 2 C 0.06 0.38 6.66 37.16 0.25 0.63 16 3 O -0.37 -3.91 9.88 -55.18 -0.54 -4.45 16 4 C 0.07 0.66 6.53 36.01 0.24 0.90 16 5 C 0.46 5.89 8.03 36.01 0.29 6.17 16 6 O -0.49 -7.76 16.25 -25.47 -0.41 -8.18 16 7 O -0.33 -4.58 9.75 -45.88 -0.45 -5.02 16 8 C 0.02 0.31 5.22 36.00 0.19 0.50 16 9 C 0.43 7.01 7.03 -32.98 -0.23 6.78 16 10 O -0.47 -8.62 16.14 -14.19 -0.23 -8.85 16 11 C -0.31 -5.33 6.11 -104.87 -0.64 -5.97 16 12 C 0.16 2.64 10.70 -16.45 -0.18 2.47 16 13 N -0.42 -8.07 2.70 -115.29 -0.31 -8.38 16 14 C 0.20 4.11 4.75 -5.19 -0.02 4.09 16 15 C -0.55 -14.08 9.94 -34.44 -0.34 -14.43 16 16 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 17 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 18 N -0.88 -24.75 13.96 55.43 0.77 -23.97 16 19 Si 0.87 18.80 27.47 -169.99 -4.67 14.14 16 20 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.26 -5.30 6.54 56.52 0.37 -4.93 16 23 C 0.09 1.66 6.78 -83.95 -0.57 1.09 16 24 C -0.10 -1.77 9.96 -39.41 -0.39 -2.16 16 25 C -0.12 -1.81 10.01 -39.57 -0.40 -2.21 16 26 C -0.14 -2.08 10.03 -39.56 -0.40 -2.47 16 27 C -0.08 -1.41 9.80 -39.39 -0.39 -1.79 16 28 C -0.05 -1.00 6.24 -104.93 -0.65 -1.65 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.10 1.19 8.13 -51.93 -0.42 0.76 16 37 H 0.10 1.30 8.13 -51.93 -0.42 0.87 16 38 H 0.18 2.29 7.91 -52.49 -0.42 1.87 16 39 H 0.05 1.00 7.16 -51.93 -0.37 0.63 16 40 H 0.04 0.90 7.57 -51.93 -0.39 0.50 16 41 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 43 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 44 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 45 H 0.13 2.06 7.38 -52.49 -0.39 1.68 16 LS Contribution 394.28 15.07 5.94 5.94 Total: -1.00 -33.20 394.28 -9.10 -42.30 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -6.23 Total: 3.03 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -2.97 Total: -6.55 kcal Atomic # 7 Polarization: -32.81 SS G_CDS: 0.46 Total: -32.35 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -1.64 Total: -26.51 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -4.67 Total: 14.14 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.20 -9.10 -42.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765839277.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.636 kcal (2) G-P(sol) polarization free energy of solvation -33.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds