Wall clock time and date at job start Wed Apr 1 2020 03:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42905 * 109.47131 * 2 1 4 4 C 1.42894 * 114.00293 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.47382 * 180.02562 * 4 3 2 6 6 O 1.20821 * 119.99861 * 0.02562 * 5 4 3 7 7 O 1.34223 * 119.99850 * 180.02562 * 5 4 3 8 8 C 1.45203 * 117.00087 * 179.97438 * 7 5 4 9 9 C 1.50691 * 109.47466 * 180.02562 * 8 7 5 10 10 O 1.21398 * 120.00150 * 359.97438 * 9 8 7 11 11 C 1.41733 * 120.00205 * 180.02562 * 9 8 7 12 12 C 1.37862 * 126.91018 * 0.02562 * 11 9 8 13 13 N 1.34666 * 109.62237 * 179.97438 * 12 11 9 14 14 C 1.46499 * 124.64683 * 180.02562 * 13 12 11 15 15 C 1.50705 * 109.46980 * 264.95484 * 14 13 12 16 16 H 1.07998 * 119.99626 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99870 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99692 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00344 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.46870 * 89.99833 * 19 17 15 21 21 H 1.48499 * 109.47370 * 210.00091 * 19 17 15 22 22 H 1.48502 * 109.47042 * 330.00220 * 19 17 15 23 23 C 1.38023 * 110.70753 * 359.97438 * 13 12 11 24 24 C 1.39142 * 133.03684 * 179.97438 * 23 13 12 25 25 C 1.37777 * 119.94271 * 180.02562 * 24 23 13 26 26 C 1.38718 * 120.64122 * 0.02562 * 25 24 23 27 27 C 1.37805 * 120.26774 * 359.97438 * 26 25 24 28 28 C 1.39191 * 119.66997 * 0.02562 * 27 26 25 29 29 H 1.08997 * 109.47705 * 299.99997 * 1 2 3 30 30 H 1.09005 * 109.46999 * 59.99646 * 1 2 3 31 31 H 1.09001 * 109.46930 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47401 * 240.00711 * 2 1 3 33 33 H 1.08999 * 109.46842 * 119.99924 * 2 1 3 34 34 H 1.09002 * 109.47039 * 59.99928 * 4 3 2 35 35 H 1.09000 * 109.47441 * 300.00390 * 4 3 2 36 36 H 1.09004 * 109.46779 * 59.99685 * 8 7 5 37 37 H 1.09003 * 109.47169 * 300.00933 * 8 7 5 38 38 H 1.08002 * 125.19186 * 359.93331 * 12 11 9 39 39 H 1.08999 * 109.47025 * 24.95556 * 14 13 12 40 40 H 1.08994 * 109.47161 * 144.95658 * 14 13 12 41 41 H 0.97006 * 119.99376 * 179.97438 * 18 17 15 42 42 H 1.07999 * 120.02756 * 0.02778 * 24 23 13 43 43 H 1.08002 * 119.67763 * 180.02562 * 25 24 23 44 44 H 1.08004 * 119.86821 * 179.97438 * 26 25 24 45 45 H 1.07997 * 120.16366 * 179.72179 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8194 2.9163 0.0012 6 8 2.9642 3.7697 0.0016 7 8 5.1155 3.2649 0.0013 8 6 5.4161 4.6855 0.0012 9 6 6.9100 4.8830 0.0007 10 8 7.6495 3.9203 0.0008 11 6 7.4517 6.1927 0.0012 12 6 6.7496 7.3791 0.0026 13 7 7.6109 8.4144 0.0031 14 6 7.2171 9.8254 0.0051 15 6 7.2013 10.3445 -1.4096 16 1 7.4592 9.6890 -2.2282 17 6 6.8575 11.6563 -1.6588 18 7 6.8432 12.1091 -2.8934 19 14 6.4121 12.7903 -0.2428 20 1 7.6374 13.4660 0.2545 21 1 5.4402 13.8103 -0.7123 22 1 5.8045 11.9961 0.8551 23 6 8.9155 7.9638 0.0027 24 6 10.1451 8.6151 0.0025 25 6 11.3116 7.8820 0.0015 26 6 11.2752 6.4953 0.0002 27 6 10.0671 5.8323 0.0003 28 6 8.8812 6.5609 0.0013 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8340 0.9765 -0.8892 35 1 3.8333 0.9768 0.8908 36 1 4.9884 5.1473 0.8912 37 1 4.9885 5.1474 -0.8887 38 1 5.6730 7.4653 0.0025 39 1 6.2223 9.9244 0.4396 40 1 7.9302 10.4008 0.5953 41 1 6.6010 13.0320 -3.0687 42 1 10.1849 9.6944 0.0032 43 1 12.2636 8.3920 0.0018 44 1 12.1973 5.9331 -0.0010 45 1 10.0407 4.7526 -0.0053 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765839277.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:45 Heat of formation + Delta-G solvation = -122.476338 kcal Electronic energy + Delta-G solvation = -28693.323554 eV Core-core repulsion = 24448.351434 eV Total energy + Delta-G solvation = -4244.972120 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.55125 -41.67460 -39.90783 -38.92202 -38.12534 -37.37501 -35.41009 -33.77686 -32.58088 -31.47358 -31.38117 -29.85267 -29.39147 -27.94900 -25.16985 -24.09573 -23.70595 -23.17412 -22.19241 -21.87367 -20.16928 -19.27395 -18.96390 -18.26887 -18.11113 -17.80194 -17.46380 -17.05381 -16.95870 -16.59169 -16.40582 -16.11700 -15.80676 -15.51525 -15.25451 -14.94079 -14.73465 -14.51054 -14.39178 -14.37341 -13.83281 -13.71124 -13.63024 -13.41783 -13.25382 -13.19435 -12.69891 -12.59746 -12.43792 -12.35182 -12.23444 -11.90912 -11.90248 -11.88851 -11.73946 -11.60202 -10.93338 -10.72422 -10.71539 -10.55822 -9.22735 -8.66328 -8.42842 -6.55522 -0.13479 0.51917 0.86479 1.03820 1.12108 1.34923 1.35166 1.44676 1.90826 2.16236 2.23776 2.80217 2.90151 2.98674 3.15021 3.60509 3.71690 3.73818 3.99570 4.08349 4.09602 4.15597 4.17090 4.20353 4.24747 4.29837 4.33908 4.51714 4.52314 4.53973 4.55391 4.66478 4.82711 4.83366 4.87505 5.04177 5.12856 5.18251 5.24610 5.28330 5.52162 5.64406 5.70037 5.83853 5.92611 6.02364 6.23961 6.29816 6.51259 6.58311 6.69524 7.09707 8.73028 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010244 B = 0.002475 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.527214 B =11311.900386 C =13654.132466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.050 3.950 3 O -0.403 6.403 4 C 0.076 3.924 5 C 0.458 3.542 6 O -0.524 6.524 7 O -0.342 6.342 8 C 0.025 3.975 9 C 0.440 3.560 10 O -0.493 6.493 11 C -0.319 4.319 12 C 0.162 3.838 13 N -0.434 5.434 14 C 0.206 3.794 15 C -0.554 4.554 16 H 0.029 0.971 17 C 0.023 3.977 18 N -0.935 5.935 19 Si 0.947 3.053 20 H -0.263 1.263 21 H -0.282 1.282 22 H -0.233 1.233 23 C 0.058 3.942 24 C -0.123 4.123 25 C -0.110 4.110 26 C -0.129 4.129 27 C -0.097 4.097 28 C -0.079 4.079 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.114 0.886 38 H 0.211 0.789 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.273 0.727 42 H 0.120 0.880 43 H 0.155 0.845 44 H 0.155 0.845 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.897 -19.685 9.965 22.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.025 4.025 3 O -0.324 6.324 4 C -0.001 4.001 5 C 0.302 3.698 6 O -0.413 6.413 7 O -0.259 6.259 8 C -0.049 4.049 9 C 0.322 3.678 10 O -0.373 6.373 11 C -0.327 4.327 12 C 0.021 3.979 13 N -0.108 5.108 14 C 0.086 3.914 15 C -0.592 4.592 16 H 0.048 0.952 17 C -0.177 4.177 18 N -0.573 5.573 19 Si 0.768 3.232 20 H -0.188 1.188 21 H -0.207 1.207 22 H -0.156 1.156 23 C -0.046 4.046 24 C -0.143 4.143 25 C -0.129 4.129 26 C -0.148 4.148 27 C -0.116 4.116 28 C -0.082 4.082 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.116 0.884 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.132 0.868 38 H 0.228 0.772 39 H 0.094 0.906 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.138 0.862 43 H 0.173 0.827 44 H 0.173 0.827 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.965 -19.219 9.851 21.958 hybrid contribution -0.266 1.180 -0.283 1.243 sum -4.231 -18.039 9.568 20.853 Atomic orbital electron populations 1.21796 0.93159 1.03599 1.02490 1.22833 0.96143 0.81265 1.02257 1.87934 1.18878 1.29620 1.95953 1.21835 0.83589 0.87778 1.06904 1.24042 0.80153 0.93554 0.72055 1.90692 1.51612 1.53350 1.45604 1.86515 1.27450 1.27995 1.83932 1.23470 0.95545 0.79327 1.06561 1.19719 0.89100 0.87016 0.71919 1.90503 1.62877 1.43475 1.40434 1.19479 0.92536 0.93361 1.27340 1.23145 0.97610 0.85028 0.92106 1.44159 1.04493 1.08045 1.54132 1.20123 0.98652 0.75407 0.97188 1.21240 1.49113 0.97146 0.91704 0.95214 1.25816 0.93873 0.99348 0.98708 1.70037 1.48085 1.17258 1.21915 0.85733 0.79228 0.78895 0.79304 1.18819 1.20699 1.15555 1.18654 0.86064 0.93241 1.06599 1.20431 0.89968 1.00117 1.03813 1.21146 0.97509 0.94172 1.00062 1.21304 0.97861 0.94369 1.01229 1.20718 0.90714 0.99945 1.00198 1.19131 0.93308 0.91711 1.04094 0.92624 0.92771 0.88428 0.91182 0.91001 0.86137 0.85877 0.85938 0.86832 0.77199 0.90635 0.92721 0.91799 0.86184 0.82715 0.82705 0.85468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 10.28 71.98 0.74 -0.94 16 2 C 0.05 0.57 6.66 71.98 0.48 1.05 16 3 O -0.40 -7.99 9.88 -129.90 -1.28 -9.27 16 4 C 0.08 1.21 6.53 71.24 0.47 1.67 16 5 C 0.46 11.28 8.03 71.24 0.57 11.85 16 6 O -0.52 -16.49 16.25 28.41 0.46 -16.03 16 7 O -0.34 -9.00 9.75 -45.00 -0.44 -9.44 16 8 C 0.03 0.65 5.22 71.23 0.37 1.02 16 9 C 0.44 14.07 7.03 26.55 0.19 14.26 16 10 O -0.49 -18.27 16.14 15.39 0.25 -18.02 16 11 C -0.32 -10.96 6.11 -20.03 -0.12 -11.08 16 12 C 0.16 5.28 10.70 84.17 0.90 6.19 16 13 N -0.43 -16.75 2.70 -518.65 -1.40 -18.15 16 14 C 0.21 8.40 4.75 85.63 0.41 8.81 16 15 C -0.55 -28.87 9.94 25.60 0.25 -28.62 16 16 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 17 C 0.02 1.21 5.47 84.65 0.46 1.67 16 18 N -0.93 -54.46 13.96 21.45 0.30 -54.16 16 19 Si 0.95 38.11 27.47 68.60 1.88 39.99 16 20 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 21 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 22 H -0.23 -8.13 6.54 99.48 0.65 -7.48 16 23 C 0.06 2.26 6.78 38.89 0.26 2.52 16 24 C -0.12 -4.39 9.96 22.38 0.22 -4.16 16 25 C -0.11 -3.17 10.01 22.28 0.22 -2.95 16 26 C -0.13 -3.61 10.03 22.28 0.22 -3.39 16 27 C -0.10 -3.25 9.80 22.40 0.22 -3.03 16 28 C -0.08 -2.97 6.24 -20.06 -0.13 -3.10 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.10 0.57 8.14 -2.39 -0.02 0.56 16 32 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.12 2.66 8.13 -2.38 -0.02 2.64 16 37 H 0.11 2.73 8.13 -2.39 -0.02 2.71 16 38 H 0.21 5.09 7.91 -2.91 -0.02 5.07 16 39 H 0.08 2.73 7.16 -2.39 -0.02 2.72 16 40 H 0.05 2.13 7.57 -2.39 -0.02 2.11 16 41 H 0.27 14.75 8.31 -92.70 -0.77 13.98 16 42 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 43 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 44 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 45 H 0.13 4.14 7.38 -2.91 -0.02 4.12 16 Total: -1.00 -76.18 394.28 6.46 -69.71 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 0.95 Total: 23.61 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: 5.75 Total: -8.24 kcal Atomic # 7 Polarization: -71.21 SS G_CDS: -1.10 Total: -72.31 kcal Atomic # 8 Polarization: -51.75 SS G_CDS: -1.01 Total: -52.76 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 1.88 Total: 39.99 kcal Total: -76.18 6.46 -69.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765839277.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.762 kcal (2) G-P(sol) polarization free energy of solvation -76.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds