Wall clock time and date at job start Wed Apr 1 2020 03:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35891 * 116.99897 * 2 1 4 4 C 1.38752 * 120.06254 * 359.97438 * 3 2 1 5 5 C 1.38121 * 119.95107 * 180.02562 * 4 3 2 6 6 C 1.38292 * 120.05187 * 0.02562 * 5 4 3 7 7 C 1.38243 * 120.11347 * 359.95780 * 6 5 4 8 8 C 1.50694 * 119.97141 * 180.02562 * 7 6 5 9 9 H 1.09004 * 110.28774 * 200.51953 * 8 7 6 10 10 C 1.54479 * 110.24886 * 78.54573 * 8 7 6 11 11 H 1.09002 * 110.97085 * 24.53569 * 10 8 7 12 12 C 1.50699 * 111.00097 * 148.28218 * 10 8 7 13 13 O 1.21212 * 120.00362 * 353.84606 * 12 10 8 14 14 O 1.34313 * 119.99756 * 173.84997 * 12 10 8 15 15 C 1.34921 * 116.99994 * 179.97438 * 14 12 10 16 16 H 1.07999 * 120.00257 * 0.02562 * 15 14 12 17 17 C 1.38756 * 119.99939 * 179.97438 * 15 14 12 18 18 N 1.31448 * 119.99444 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 120.00128 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.46976 * 90.00276 * 19 17 15 21 21 H 1.48499 * 109.47032 * 209.99778 * 19 17 15 22 22 H 1.48495 * 109.47391 * 330.00308 * 19 17 15 23 23 C 1.54623 * 101.76448 * 266.41487 * 10 8 7 24 24 C 1.51286 * 104.19583 * 335.20040 * 23 10 8 25 25 O 1.21283 * 124.94068 * 196.22850 * 24 23 10 26 26 N 1.34417 * 110.11517 * 16.49747 * 24 23 10 27 27 C 1.46497 * 124.35094 * 180.16242 * 26 24 23 28 28 C 1.53001 * 117.49670 * 8.64332 * 27 26 24 29 29 C 1.53000 * 60.00005 * 252.51020 * 28 27 26 30 30 C 1.38166 * 120.05523 * 0.27334 * 7 6 5 31 31 H 1.08999 * 109.47029 * 60.00068 * 1 2 3 32 32 H 1.09000 * 109.47485 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47007 * 300.00255 * 1 2 3 34 34 H 1.08000 * 120.02441 * 359.97438 * 4 3 2 35 35 H 1.07995 * 119.97208 * 179.97438 * 5 4 3 36 36 H 1.08001 * 119.94311 * 179.97438 * 6 5 4 37 37 H 0.97005 * 119.99185 * 180.02562 * 18 17 15 38 38 H 1.09000 * 110.48720 * 216.52574 * 23 10 8 39 39 H 1.09003 * 110.60041 * 93.93250 * 23 10 8 40 40 H 1.09003 * 115.55252 * 154.35029 * 27 26 24 41 41 H 1.08998 * 117.49987 * 0.02562 * 28 27 26 42 42 H 1.09003 * 117.49326 * 145.02212 * 28 27 26 43 43 H 1.09001 * 117.49942 * 252.50944 * 29 28 27 44 44 H 1.08998 * 117.51364 * 107.47830 * 29 28 27 45 45 H 1.07997 * 120.03313 * 179.74280 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2915 2.3753 -0.0005 5 6 1.9209 3.6047 -0.0011 6 6 3.3020 3.6757 -0.0016 7 6 4.0561 2.5170 -0.0007 8 6 5.5608 2.5981 -0.0007 9 1 5.9898 1.6620 -0.3584 10 6 6.0792 2.9153 1.4195 11 1 5.3615 2.5989 2.1764 12 6 7.4250 2.2804 1.6576 13 8 7.8984 1.5341 0.8280 14 8 8.0999 2.5414 2.7891 15 6 9.2984 1.9404 2.9400 16 1 9.6741 1.2838 2.1692 17 6 10.0487 2.1666 4.0850 18 7 11.2165 1.5813 4.2317 19 14 9.3992 3.3027 5.4180 20 1 8.6038 2.5160 6.3946 21 1 10.5393 3.9500 6.1154 22 1 8.5383 4.3451 4.8038 23 6 6.1943 4.4566 1.3761 24 6 6.3658 4.7747 -0.0929 25 8 6.7663 5.8316 -0.5327 26 7 6.0042 3.7174 -0.8401 27 6 6.0502 3.6852 -2.3040 28 6 6.7295 4.8571 -3.0153 29 6 5.2069 4.7139 -3.0600 30 6 3.4312 1.2848 -0.0050 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 0.2129 2.3204 -0.0014 35 1 1.3341 4.5113 -0.0019 36 1 3.7924 4.6380 -0.0024 37 1 11.7409 1.7392 5.0324 38 1 7.0637 4.7903 1.9426 39 1 5.2869 4.9201 1.7634 40 1 6.1561 2.6960 -2.7494 41 1 7.1426 5.6518 -2.3941 42 1 7.2826 4.6390 -3.9289 43 1 4.7583 4.4015 -4.0031 44 1 4.6176 5.4142 -2.4682 45 1 4.0206 0.3798 -0.0085 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776455628.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:25 Heat of formation + Delta-G solvation = -76.680604 kcal Electronic energy + Delta-G solvation = -30887.610605 eV Core-core repulsion = 26644.624338 eV Total energy + Delta-G solvation = -4242.986268 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.35808 -40.09443 -39.10352 -37.85109 -36.54061 -36.22793 -35.11702 -32.38185 -31.62920 -31.15520 -30.31892 -27.81703 -27.02890 -25.84437 -23.70595 -22.81353 -22.69024 -22.28117 -21.29454 -19.75265 -19.13558 -18.34273 -18.05469 -17.03985 -16.72061 -16.33677 -16.21158 -15.97652 -15.68018 -15.40486 -14.83190 -14.73205 -14.51536 -14.19522 -14.08523 -13.81465 -13.54414 -13.45218 -13.19919 -12.82502 -12.54301 -12.41451 -12.29521 -12.27838 -12.02091 -11.63564 -11.55073 -11.39691 -11.26879 -11.22902 -11.14391 -10.88116 -10.53172 -10.42484 -10.39196 -9.75719 -9.41962 -9.31696 -9.02466 -8.72503 -8.54095 -8.36453 -6.41295 -4.17661 1.05232 1.26959 2.59356 2.79586 3.03323 3.07328 3.21747 3.28226 3.34868 3.49879 3.83096 3.93904 4.21044 4.35497 4.43456 4.55941 4.60392 4.79605 4.82755 4.84244 4.88271 4.88730 5.00903 5.07763 5.08639 5.13121 5.16352 5.22718 5.34290 5.46873 5.52318 5.64957 5.69816 5.73009 5.83667 5.95707 5.99912 6.07941 6.22146 6.25230 6.29338 6.41518 6.51946 6.75879 7.13419 7.17524 7.65614 7.98629 8.23039 8.52337 8.95846 9.58749 10.66817 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009989 B = 0.003832 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.530670 B = 7304.954281 C = 8923.627444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.127 3.873 4 C -0.206 4.206 5 C -0.080 4.080 6 C -0.134 4.134 7 C -0.053 4.053 8 C 0.188 3.812 9 H 0.122 0.878 10 C -0.077 4.077 11 H 0.128 0.872 12 C 0.414 3.586 13 O -0.530 6.530 14 O -0.244 6.244 15 C -0.382 4.382 16 H 0.110 0.890 17 C 0.068 3.932 18 N -0.871 5.871 19 Si 0.903 3.097 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.258 1.258 23 C -0.150 4.150 24 C 0.523 3.477 25 O -0.525 6.525 26 N -0.576 5.576 27 C 0.088 3.912 28 C -0.190 4.190 29 C -0.189 4.189 30 C -0.134 4.134 31 H 0.054 0.946 32 H 0.099 0.901 33 H 0.055 0.945 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.119 0.881 37 H 0.280 0.720 38 H 0.119 0.881 39 H 0.114 0.886 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.772 2.758 -9.123 24.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.082 3.918 4 C -0.225 4.225 5 C -0.098 4.098 6 C -0.153 4.153 7 C -0.054 4.054 8 C 0.084 3.916 9 H 0.139 0.861 10 C -0.097 4.097 11 H 0.146 0.854 12 C 0.260 3.740 13 O -0.425 6.425 14 O -0.152 6.152 15 C -0.458 4.458 16 H 0.128 0.872 17 C -0.137 4.137 18 N -0.510 5.510 19 Si 0.728 3.272 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.182 1.182 23 C -0.190 4.190 24 C 0.312 3.688 25 O -0.403 6.403 26 N -0.307 5.307 27 C -0.016 4.016 28 C -0.227 4.227 29 C -0.227 4.227 30 C -0.153 4.153 31 H 0.072 0.928 32 H 0.117 0.883 33 H 0.073 0.927 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.137 0.863 37 H 0.091 0.909 38 H 0.138 0.862 39 H 0.132 0.868 40 H 0.146 0.854 41 H 0.149 0.851 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.111 0.889 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -22.129 2.896 -9.490 24.252 hybrid contribution -0.452 0.386 0.662 0.889 sum -22.581 3.282 -8.828 24.467 Atomic orbital electron populations 1.23045 0.78477 1.03921 1.01251 1.86091 1.21274 1.26877 1.88735 1.18923 0.92121 0.84161 0.96639 1.21223 0.99897 0.92412 1.08981 1.20876 0.94345 0.96964 0.97604 1.20864 0.93565 0.98038 1.02821 1.19777 0.94656 0.92695 0.98312 1.20401 0.89318 0.92400 0.89524 0.86072 1.21699 0.95149 0.95579 0.97274 0.85436 1.22278 0.86971 0.82921 0.81878 1.90610 1.69030 1.37264 1.45621 1.83477 1.32051 1.62433 1.37229 1.20651 0.90895 1.27066 1.07148 0.87196 1.24546 0.94544 0.97087 0.97478 1.69608 1.11003 1.41715 1.28650 0.86245 0.78859 0.81127 0.80936 1.19763 1.20676 1.18237 1.22468 1.06715 0.94716 0.95147 1.20867 0.75835 0.82962 0.89119 1.90591 1.46450 1.25698 1.77523 1.47511 1.63755 1.14719 1.04685 1.21451 1.05894 0.96263 0.77952 1.23738 0.95154 1.01457 1.02351 1.23305 0.94490 1.02969 1.01965 1.20258 0.91419 0.98167 1.05427 0.92756 0.88266 0.92651 0.85612 0.85797 0.86253 0.90931 0.86245 0.86754 0.85379 0.85093 0.88622 0.88522 0.88909 0.84593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.33 10.50 -19.40 -0.20 -3.53 16 3 C 0.13 1.39 6.69 -39.21 -0.26 1.13 16 4 C -0.21 -1.93 9.04 -39.43 -0.36 -2.29 16 5 C -0.08 -0.75 10.04 -39.60 -0.40 -1.15 16 6 C -0.13 -1.47 9.02 -39.56 -0.36 -1.83 16 7 C -0.05 -0.64 4.88 -104.65 -0.51 -1.15 16 8 C 0.19 2.67 2.74 -68.17 -0.19 2.48 16 9 H 0.12 1.88 6.85 -51.93 -0.36 1.52 16 10 C -0.08 -1.22 3.16 -90.14 -0.28 -1.51 16 11 H 0.13 1.70 7.89 -51.93 -0.41 1.29 16 12 C 0.41 9.18 7.20 36.01 0.26 9.44 16 13 O -0.53 -13.25 14.75 -19.05 -0.28 -13.53 16 14 O -0.24 -6.16 8.36 -20.71 -0.17 -6.34 16 15 C -0.38 -11.10 10.10 30.92 0.31 -10.79 16 16 H 0.11 3.53 7.09 -52.49 -0.37 3.16 16 17 C 0.07 1.91 5.49 -17.52 -0.10 1.81 16 18 N -0.87 -25.50 13.96 55.48 0.77 -24.73 16 19 Si 0.90 20.96 28.62 -169.99 -4.86 16.09 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 23 C -0.15 -2.25 5.85 -26.74 -0.16 -2.40 16 24 C 0.52 8.63 6.77 -10.86 -0.07 8.56 16 25 O -0.53 -9.86 14.69 5.55 0.08 -9.78 16 26 N -0.58 -8.53 2.37 -158.68 -0.38 -8.91 16 27 C 0.09 1.17 6.87 -67.93 -0.47 0.70 16 28 C -0.19 -2.52 9.77 -26.73 -0.26 -2.78 16 29 C -0.19 -2.17 10.34 -26.73 -0.28 -2.45 16 30 C -0.13 -1.58 9.62 -39.43 -0.38 -1.96 16 31 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 32 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 34 H 0.13 0.88 6.30 -52.49 -0.33 0.55 16 35 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.12 1.34 6.26 -52.49 -0.33 1.01 16 37 H 0.28 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.12 1.99 7.73 -51.93 -0.40 1.59 16 39 H 0.11 1.31 7.94 -51.93 -0.41 0.90 16 40 H 0.13 1.52 8.14 -51.93 -0.42 1.10 16 41 H 0.13 2.11 5.30 -51.93 -0.28 1.84 16 42 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.14 1.59 8.05 -52.49 -0.42 1.16 16 LS Contribution 377.76 15.07 5.69 5.69 Total: -1.00 -34.06 377.76 -7.63 -41.68 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -5.77 Total: 6.36 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -2.50 Total: -3.01 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: 0.40 Total: -33.64 kcal Atomic # 8 Polarization: -32.60 SS G_CDS: -0.58 Total: -33.18 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.86 Total: 16.09 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.06 -7.63 -41.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776455628.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.997 kcal (2) G-P(sol) polarization free energy of solvation -34.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds