Wall clock time and date at job start Wed Apr 1 2020 03:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35891 * 116.99897 * 2 1 4 4 C 1.38752 * 120.06254 * 359.97438 * 3 2 1 5 5 C 1.38121 * 119.95107 * 180.02562 * 4 3 2 6 6 C 1.38292 * 120.05187 * 0.02562 * 5 4 3 7 7 C 1.38243 * 120.11347 * 359.95780 * 6 5 4 8 8 C 1.50694 * 119.97141 * 180.02562 * 7 6 5 9 9 H 1.09004 * 110.28774 * 200.51953 * 8 7 6 10 10 C 1.54479 * 110.24886 * 78.54573 * 8 7 6 11 11 H 1.09002 * 110.97085 * 24.53569 * 10 8 7 12 12 C 1.50699 * 111.00097 * 148.28218 * 10 8 7 13 13 O 1.21212 * 120.00362 * 353.84606 * 12 10 8 14 14 O 1.34313 * 119.99756 * 173.84997 * 12 10 8 15 15 C 1.34921 * 116.99994 * 179.97438 * 14 12 10 16 16 H 1.07999 * 120.00257 * 0.02562 * 15 14 12 17 17 C 1.38756 * 119.99939 * 179.97438 * 15 14 12 18 18 N 1.31448 * 119.99444 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 120.00128 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.46976 * 90.00276 * 19 17 15 21 21 H 1.48499 * 109.47032 * 209.99778 * 19 17 15 22 22 H 1.48495 * 109.47391 * 330.00308 * 19 17 15 23 23 C 1.54623 * 101.76448 * 266.41487 * 10 8 7 24 24 C 1.51286 * 104.19583 * 335.20040 * 23 10 8 25 25 O 1.21283 * 124.94068 * 196.22850 * 24 23 10 26 26 N 1.34417 * 110.11517 * 16.49747 * 24 23 10 27 27 C 1.46497 * 124.35094 * 180.16242 * 26 24 23 28 28 C 1.53001 * 117.49670 * 8.64332 * 27 26 24 29 29 C 1.53000 * 60.00005 * 252.51020 * 28 27 26 30 30 C 1.38166 * 120.05523 * 0.27334 * 7 6 5 31 31 H 1.08999 * 109.47029 * 60.00068 * 1 2 3 32 32 H 1.09000 * 109.47485 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47007 * 300.00255 * 1 2 3 34 34 H 1.08000 * 120.02441 * 359.97438 * 4 3 2 35 35 H 1.07995 * 119.97208 * 179.97438 * 5 4 3 36 36 H 1.08001 * 119.94311 * 179.97438 * 6 5 4 37 37 H 0.97005 * 119.99185 * 180.02562 * 18 17 15 38 38 H 1.09000 * 110.48720 * 216.52574 * 23 10 8 39 39 H 1.09003 * 110.60041 * 93.93250 * 23 10 8 40 40 H 1.09003 * 115.55252 * 154.35029 * 27 26 24 41 41 H 1.08998 * 117.49987 * 0.02562 * 28 27 26 42 42 H 1.09003 * 117.49326 * 145.02212 * 28 27 26 43 43 H 1.09001 * 117.49942 * 252.50944 * 29 28 27 44 44 H 1.08998 * 117.51364 * 107.47830 * 29 28 27 45 45 H 1.07997 * 120.03313 * 179.74280 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2915 2.3753 -0.0005 5 6 1.9209 3.6047 -0.0011 6 6 3.3020 3.6757 -0.0016 7 6 4.0561 2.5170 -0.0007 8 6 5.5608 2.5981 -0.0007 9 1 5.9898 1.6620 -0.3584 10 6 6.0792 2.9153 1.4195 11 1 5.3615 2.5989 2.1764 12 6 7.4250 2.2804 1.6576 13 8 7.8984 1.5341 0.8280 14 8 8.0999 2.5414 2.7891 15 6 9.2984 1.9404 2.9400 16 1 9.6741 1.2838 2.1692 17 6 10.0487 2.1666 4.0850 18 7 11.2165 1.5813 4.2317 19 14 9.3992 3.3027 5.4180 20 1 8.6038 2.5160 6.3946 21 1 10.5393 3.9500 6.1154 22 1 8.5383 4.3451 4.8038 23 6 6.1943 4.4566 1.3761 24 6 6.3658 4.7747 -0.0929 25 8 6.7663 5.8316 -0.5327 26 7 6.0042 3.7174 -0.8401 27 6 6.0502 3.6852 -2.3040 28 6 6.7295 4.8571 -3.0153 29 6 5.2069 4.7139 -3.0600 30 6 3.4312 1.2848 -0.0050 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 0.2129 2.3204 -0.0014 35 1 1.3341 4.5113 -0.0019 36 1 3.7924 4.6380 -0.0024 37 1 11.7409 1.7392 5.0324 38 1 7.0637 4.7903 1.9426 39 1 5.2869 4.9201 1.7634 40 1 6.1561 2.6960 -2.7494 41 1 7.1426 5.6518 -2.3941 42 1 7.2826 4.6390 -3.9289 43 1 4.7583 4.4015 -4.0031 44 1 4.6176 5.4142 -2.4682 45 1 4.0206 0.3798 -0.0085 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776455628.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:24 Heat of formation + Delta-G solvation = -96.965431 kcal Electronic energy + Delta-G solvation = -30888.490221 eV Core-core repulsion = 26644.624338 eV Total energy + Delta-G solvation = -4243.865884 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.59628 -41.03178 -40.78622 -38.80959 -37.68653 -37.65703 -36.75953 -34.52939 -32.51560 -32.41517 -31.10735 -28.73496 -28.08107 -27.57585 -25.09274 -23.94881 -23.52439 -23.25901 -22.31098 -21.37028 -20.34600 -20.16623 -19.33410 -18.50777 -17.82080 -17.47895 -17.15144 -17.00807 -16.77337 -16.59586 -16.40745 -16.10204 -15.83904 -15.65698 -15.19824 -14.85824 -14.58244 -14.52945 -14.34236 -14.28693 -14.11664 -13.75387 -13.52901 -13.26764 -13.04975 -12.87049 -12.79100 -12.59701 -12.41773 -12.37367 -12.25100 -12.19265 -11.92247 -11.85501 -11.72389 -11.40989 -11.15784 -10.84693 -10.68301 -9.90392 -9.65063 -9.15544 -8.56083 -6.43562 0.23121 0.48015 1.22789 1.32746 1.35149 1.49378 1.55954 1.70136 2.15334 2.28149 2.41759 2.70599 2.86172 2.89706 3.18097 3.20949 3.58327 3.60622 3.81538 3.87968 3.97454 4.04439 4.13833 4.15534 4.25591 4.33037 4.35886 4.44754 4.45956 4.51702 4.56902 4.65999 4.72074 4.75044 4.76825 4.78680 4.98044 5.02163 5.25291 5.31196 5.44429 5.45166 5.53203 5.65790 5.77232 5.86280 5.94162 6.47473 6.48334 6.79605 6.98104 7.51529 8.56627 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009989 B = 0.003832 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.530670 B = 7304.954281 C = 8923.627444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.339 6.339 3 C 0.120 3.880 4 C -0.198 4.198 5 C -0.073 4.073 6 C -0.137 4.137 7 C -0.055 4.055 8 C 0.195 3.805 9 H 0.101 0.899 10 C -0.069 4.069 11 H 0.163 0.837 12 C 0.416 3.584 13 O -0.564 6.564 14 O -0.248 6.248 15 C -0.408 4.408 16 H 0.057 0.943 17 C 0.017 3.983 18 N -0.916 5.916 19 Si 0.979 3.021 20 H -0.255 1.255 21 H -0.269 1.269 22 H -0.245 1.245 23 C -0.145 4.145 24 C 0.513 3.487 25 O -0.555 6.555 26 N -0.574 5.574 27 C 0.066 3.934 28 C -0.202 4.202 29 C -0.159 4.159 30 C -0.150 4.150 31 H 0.067 0.933 32 H 0.114 0.886 33 H 0.067 0.933 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.119 0.881 37 H 0.289 0.711 38 H 0.103 0.897 39 H 0.159 0.841 40 H 0.138 0.862 41 H 0.102 0.898 42 H 0.112 0.888 43 H 0.125 0.875 44 H 0.088 0.912 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.971 4.373 -8.558 28.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.253 6.253 3 C 0.074 3.926 4 C -0.216 4.216 5 C -0.091 4.091 6 C -0.156 4.156 7 C -0.056 4.056 8 C 0.091 3.909 9 H 0.119 0.881 10 C -0.088 4.088 11 H 0.180 0.820 12 C 0.263 3.737 13 O -0.459 6.459 14 O -0.157 6.157 15 C -0.483 4.483 16 H 0.075 0.925 17 C -0.183 4.183 18 N -0.556 5.556 19 Si 0.798 3.202 20 H -0.180 1.180 21 H -0.194 1.194 22 H -0.168 1.168 23 C -0.184 4.184 24 C 0.303 3.697 25 O -0.434 6.434 26 N -0.304 5.304 27 C -0.037 4.037 28 C -0.240 4.240 29 C -0.197 4.197 30 C -0.169 4.169 31 H 0.086 0.914 32 H 0.132 0.868 33 H 0.086 0.914 34 H 0.172 0.828 35 H 0.170 0.830 36 H 0.137 0.863 37 H 0.099 0.901 38 H 0.121 0.879 39 H 0.177 0.823 40 H 0.156 0.844 41 H 0.120 0.880 42 H 0.130 0.870 43 H 0.143 0.857 44 H 0.106 0.894 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -26.347 4.474 -8.957 28.186 hybrid contribution 0.786 -0.252 0.300 0.878 sum -25.562 4.223 -8.658 27.316 Atomic orbital electron populations 1.23348 0.76303 1.05468 1.02455 1.86068 1.23597 1.26957 1.88665 1.19024 0.91870 0.85082 0.96583 1.21538 1.01267 0.91596 1.07210 1.21182 0.93724 0.98119 0.96047 1.20893 0.94373 0.97271 1.03034 1.19394 0.92615 0.93398 1.00242 1.20267 0.91231 0.91236 0.88166 0.88112 1.21856 0.91419 0.96050 0.99474 0.81963 1.23713 0.88327 0.81470 0.80184 1.90597 1.70340 1.38616 1.46392 1.83489 1.30826 1.62634 1.38766 1.20295 0.93048 1.28053 1.06944 0.92504 1.25582 0.94418 0.98530 0.99797 1.69711 1.12518 1.43318 1.30020 0.85131 0.78830 0.78914 0.77287 1.17963 1.19371 1.16800 1.22530 1.08166 0.93555 0.94166 1.21153 0.75679 0.82947 0.89959 1.90589 1.47878 1.26872 1.78101 1.47602 1.63068 1.14261 1.05453 1.21756 1.07496 0.97107 0.77348 1.23681 0.96995 1.00670 1.02640 1.23312 0.93039 1.01008 1.02327 1.20245 0.92321 0.97759 1.06605 0.91406 0.86803 0.91426 0.82845 0.82974 0.86350 0.90063 0.87874 0.82314 0.84403 0.88009 0.86967 0.85714 0.89354 0.85724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.34 -6.48 10.50 -92.32 -0.97 -7.45 16 3 C 0.12 2.36 6.69 22.51 0.15 2.51 16 4 C -0.20 -2.92 9.04 22.36 0.20 -2.71 16 5 C -0.07 -1.07 10.04 22.25 0.22 -0.84 16 6 C -0.14 -2.60 9.02 22.28 0.20 -2.40 16 7 C -0.06 -1.24 4.88 -19.88 -0.10 -1.34 16 8 C 0.19 5.51 2.74 44.70 0.12 5.63 16 9 H 0.10 3.27 6.85 -2.38 -0.02 3.26 16 10 C -0.07 -2.13 3.16 -10.48 -0.03 -2.16 16 11 H 0.16 3.94 7.89 -2.39 -0.02 3.92 16 12 C 0.42 19.04 7.20 71.24 0.51 19.55 16 13 O -0.56 -29.88 14.75 20.77 0.31 -29.57 16 14 O -0.25 -12.86 8.36 14.84 0.12 -12.74 16 15 C -0.41 -24.89 10.10 67.94 0.69 -24.21 16 16 H 0.06 3.97 7.09 -2.91 -0.02 3.95 16 17 C 0.02 0.98 5.49 84.87 0.47 1.44 16 18 N -0.92 -55.49 13.96 21.63 0.30 -55.19 16 19 Si 0.98 42.90 28.62 68.60 1.96 44.86 16 20 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 21 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 22 H -0.24 -10.10 7.11 99.48 0.71 -9.40 16 23 C -0.14 -4.11 5.85 30.59 0.18 -3.94 16 24 C 0.51 16.79 6.77 87.90 0.60 17.39 16 25 O -0.55 -21.04 14.69 -3.04 -0.04 -21.08 16 26 N -0.57 -16.89 2.37 -774.52 -1.84 -18.73 16 27 C 0.07 1.72 6.87 44.99 0.31 2.03 16 28 C -0.20 -5.33 9.77 30.59 0.30 -5.03 16 29 C -0.16 -3.36 10.34 30.59 0.32 -3.04 16 30 C -0.15 -3.42 9.62 22.37 0.22 -3.20 16 31 H 0.07 0.47 7.66 -2.39 -0.02 0.45 16 32 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.07 0.48 7.66 -2.39 -0.02 0.47 16 34 H 0.15 1.38 6.30 -2.91 -0.02 1.36 16 35 H 0.15 1.40 8.06 -2.91 -0.02 1.37 16 36 H 0.12 2.29 6.26 -2.91 -0.02 2.27 16 37 H 0.29 15.81 8.31 -92.70 -0.77 15.04 16 38 H 0.10 3.36 7.73 -2.39 -0.02 3.34 16 39 H 0.16 3.08 7.94 -2.39 -0.02 3.06 16 40 H 0.14 3.25 8.14 -2.39 -0.02 3.23 16 41 H 0.10 3.38 5.30 -2.39 -0.01 3.37 16 42 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 43 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.12 3.00 8.05 -2.91 -0.02 2.98 16 Total: -1.00 -79.71 377.76 6.33 -73.38 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: 1.03 Total: 25.55 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 5.46 Total: 0.98 kcal Atomic # 7 Polarization: -72.38 SS G_CDS: -1.54 Total: -73.92 kcal Atomic # 8 Polarization: -70.27 SS G_CDS: -0.58 Total: -70.85 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.96 Total: 44.86 kcal Total: -79.71 6.33 -73.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776455628.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.585 kcal (2) G-P(sol) polarization free energy of solvation -79.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds