Wall clock time and date at job start Wed Apr 1 2020 03:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35902 * 116.99830 * 2 1 4 4 C 1.38744 * 120.05556 * 0.02562 * 3 2 1 5 5 C 1.38129 * 119.94481 * 180.02562 * 4 3 2 6 6 C 1.38282 * 120.05249 * 0.02608 * 5 4 3 7 7 C 1.38247 * 120.11601 * 359.97438 * 6 5 4 8 8 C 1.50693 * 119.97565 * 179.97438 * 7 6 5 9 9 H 1.08997 * 110.29188 * 159.47952 * 8 7 6 10 10 C 1.54485 * 110.24440 * 281.45611 * 8 7 6 11 11 H 1.08997 * 110.96657 * 211.70303 * 10 8 7 12 12 C 1.50703 * 110.96867 * 335.46357 * 10 8 7 13 13 O 1.21210 * 119.99780 * 353.83271 * 12 10 8 14 14 O 1.34304 * 119.99896 * 173.83514 * 12 10 8 15 15 C 1.34928 * 117.00038 * 179.97438 * 14 12 10 16 16 H 1.08001 * 119.99541 * 0.02562 * 15 14 12 17 17 C 1.38745 * 120.00167 * 179.97438 * 15 14 12 18 18 N 1.31448 * 120.00111 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 120.00076 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47152 * 89.99445 * 19 17 15 21 21 H 1.48493 * 109.47177 * 209.99604 * 19 17 15 22 22 H 1.48494 * 109.47018 * 329.99809 * 19 17 15 23 23 C 1.54627 * 101.76594 * 93.58316 * 10 8 7 24 24 C 1.51283 * 104.19534 * 24.80047 * 23 10 8 25 25 O 1.21277 * 124.93853 * 163.78712 * 24 23 10 26 26 N 1.34417 * 110.11678 * 343.74279 * 24 23 10 27 27 C 1.46502 * 124.35146 * 179.57049 * 26 24 23 28 28 C 1.53006 * 117.49652 * 8.72865 * 27 26 24 29 29 C 1.52996 * 117.49853 * 300.07109 * 27 26 24 30 30 C 1.38166 * 120.04991 * 0.23514 * 7 6 5 31 31 H 1.08994 * 109.46817 * 60.00133 * 1 2 3 32 32 H 1.09007 * 109.46855 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47191 * 299.99646 * 1 2 3 34 34 H 1.08003 * 120.03057 * 0.04112 * 4 3 2 35 35 H 1.08002 * 119.97118 * 179.97438 * 5 4 3 36 36 H 1.07998 * 119.94606 * 179.97438 * 6 5 4 37 37 H 0.96994 * 119.99850 * 180.02562 * 18 17 15 38 38 H 1.09005 * 110.48027 * 143.47533 * 23 10 8 39 39 H 1.09000 * 110.48552 * 266.11612 * 23 10 8 40 40 H 1.08996 * 115.54796 * 154.39184 * 27 26 24 41 41 H 1.08997 * 117.49329 * 359.97438 * 28 27 26 42 42 H 1.08991 * 117.49400 * 145.01663 * 28 27 26 43 43 H 1.09006 * 117.49490 * 214.97790 * 29 27 26 44 44 H 1.08995 * 117.50157 * 359.96795 * 29 27 26 45 45 H 1.08006 * 120.02597 * 179.74335 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3752 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3018 3.6758 -0.0016 7 6 4.0560 2.5171 -0.0022 8 6 5.5607 2.5982 -0.0045 9 1 5.9902 1.6627 0.3537 10 6 6.0769 2.9137 -1.4260 11 1 7.0501 2.4542 -1.5985 12 6 5.0829 2.4748 -2.4704 13 8 4.0955 1.8524 -2.1436 14 8 5.2913 2.7734 -3.7631 15 6 4.3634 2.3506 -4.6467 16 1 3.5012 1.7991 -4.3019 17 6 4.5163 2.6253 -5.9981 18 7 3.6126 2.2130 -6.8590 19 14 6.0072 3.5799 -6.5944 20 1 7.1048 2.6330 -6.9167 21 1 5.6467 4.3521 -7.8104 22 1 6.4554 4.5133 -5.5300 23 6 6.1920 4.4551 -1.3848 24 6 6.3658 4.7750 0.0836 25 8 6.7666 5.8326 0.5214 26 7 6.0104 3.7168 0.8325 27 6 6.0655 3.6841 2.2961 28 6 6.3629 4.9980 3.0214 29 6 7.4283 3.9008 2.9568 30 6 3.4311 1.2849 -0.0060 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 0.2128 2.3203 0.0016 35 1 1.3339 4.5114 0.0000 36 1 3.7922 4.6380 -0.0025 37 1 3.7197 2.4047 -7.8037 38 1 7.0606 4.7880 -1.9531 39 1 5.2828 4.9160 -1.7707 40 1 5.3779 2.9883 2.7769 41 1 6.5181 5.8866 2.4095 42 1 5.8714 5.1663 3.9795 43 1 7.6372 3.3477 3.8726 44 1 8.2840 4.0672 2.3026 45 1 4.0206 0.3799 -0.0106 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776455629.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:28 Heat of formation + Delta-G solvation = -57.532755 kcal Electronic energy + Delta-G solvation = -31613.927396 eV Core-core repulsion = 27371.771442 eV Total energy + Delta-G solvation = -4242.155955 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.38826 -39.62106 -39.13230 -37.51575 -36.65905 -35.95178 -35.14873 -32.36636 -31.25425 -31.07716 -29.81038 -27.50353 -26.84288 -25.74341 -23.53195 -22.84354 -22.47346 -22.23448 -21.13690 -19.64718 -19.13759 -18.05130 -17.85080 -17.05081 -16.66462 -15.99437 -15.83915 -15.67284 -15.49522 -15.35799 -14.78015 -14.68955 -14.43373 -14.04637 -13.93384 -13.67384 -13.37855 -13.15983 -13.07826 -12.94874 -12.51581 -12.34342 -12.12200 -11.97059 -11.67582 -11.61407 -11.47305 -11.32461 -11.23396 -11.02354 -10.75270 -10.52886 -10.52757 -10.46885 -10.38382 -9.74377 -9.68768 -9.34699 -8.71199 -8.63652 -7.85120 -7.74039 -6.39811 -4.15229 1.67233 1.91529 2.48703 2.70963 3.07260 3.22356 3.29772 3.35385 3.53771 3.71628 3.90877 4.01406 4.21541 4.41428 4.52889 4.72213 4.81281 4.82463 4.91995 5.04609 5.07101 5.09862 5.14949 5.24984 5.32024 5.36252 5.42079 5.48074 5.57119 5.58301 5.65204 5.75067 5.85501 5.88279 5.93584 5.97848 6.16155 6.28076 6.36788 6.57401 6.67048 6.79084 6.90776 7.03439 7.09193 7.69850 7.75171 8.00443 8.11661 8.57793 8.98412 9.63306 10.68492 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008150 B = 0.005336 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3434.798780 B = 5246.437068 C = 7970.910341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.320 6.320 3 C 0.122 3.878 4 C -0.205 4.205 5 C -0.085 4.085 6 C -0.147 4.147 7 C -0.024 4.024 8 C 0.192 3.808 9 H 0.106 0.894 10 C -0.080 4.080 11 H 0.122 0.878 12 C 0.412 3.588 13 O -0.505 6.505 14 O -0.247 6.247 15 C -0.376 4.376 16 H 0.110 0.890 17 C 0.067 3.933 18 N -0.874 5.874 19 Si 0.901 3.099 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.259 1.259 23 C -0.146 4.146 24 C 0.525 3.475 25 O -0.527 6.527 26 N -0.582 5.582 27 C 0.086 3.914 28 C -0.190 4.190 29 C -0.191 4.191 30 C -0.078 4.078 31 H 0.054 0.946 32 H 0.094 0.906 33 H 0.049 0.951 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.279 0.721 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.510 0.308 17.455 17.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.234 6.234 3 C 0.077 3.923 4 C -0.224 4.224 5 C -0.103 4.103 6 C -0.166 4.166 7 C -0.026 4.026 8 C 0.088 3.912 9 H 0.124 0.876 10 C -0.099 4.099 11 H 0.140 0.860 12 C 0.257 3.743 13 O -0.398 6.398 14 O -0.156 6.156 15 C -0.452 4.452 16 H 0.128 0.872 17 C -0.137 4.137 18 N -0.513 5.513 19 Si 0.727 3.273 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.183 1.183 23 C -0.186 4.186 24 C 0.314 3.686 25 O -0.404 6.404 26 N -0.313 5.313 27 C -0.018 4.018 28 C -0.227 4.227 29 C -0.230 4.230 30 C -0.097 4.097 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.068 0.932 34 H 0.136 0.864 35 H 0.133 0.867 36 H 0.126 0.874 37 H 0.089 0.911 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.147 0.853 41 H 0.149 0.851 42 H 0.113 0.887 43 H 0.117 0.883 44 H 0.113 0.887 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.483 0.505 17.594 17.663 hybrid contribution 0.156 0.391 -0.737 0.849 sum 1.639 0.896 16.857 16.960 Atomic orbital electron populations 1.22955 0.79108 1.03323 1.01044 1.86032 1.20801 1.27378 1.89213 1.18745 0.92145 0.83721 0.97653 1.21028 0.99288 0.92571 1.09500 1.20644 0.94283 0.96603 0.98749 1.20550 0.93765 0.97154 1.05084 1.19238 0.93356 0.93069 0.96919 1.20324 0.91569 0.90349 0.88908 0.87635 1.21718 1.00003 0.96721 0.91504 0.86047 1.22184 0.86665 0.82035 0.83446 1.90811 1.29446 1.39696 1.79888 1.83486 1.48718 1.67527 1.15864 1.20612 1.02771 1.35718 0.86078 0.87222 1.24523 0.98040 0.96727 0.94401 1.69604 1.34155 1.44447 1.03080 0.86277 0.82010 0.80424 0.78625 1.19887 1.20815 1.18298 1.22413 1.06755 0.95025 0.94412 1.20897 0.75733 0.82894 0.89102 1.90591 1.46827 1.25388 1.77596 1.47657 1.64061 1.14845 1.04702 1.21472 0.99592 1.02371 0.78334 1.23753 1.01874 0.95128 1.01963 1.23364 0.93503 1.03396 1.02698 1.19738 0.91019 0.97105 1.01834 0.92719 0.88754 0.93226 0.86371 0.86659 0.87412 0.91051 0.86717 0.86770 0.85311 0.85076 0.88672 0.88307 0.88704 0.86034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.35 16 2 O -0.32 -5.13 10.50 -19.43 -0.20 -5.34 16 3 C 0.12 2.06 6.69 -39.22 -0.26 1.80 16 4 C -0.21 -3.23 9.04 -39.43 -0.36 -3.58 16 5 C -0.08 -1.33 10.04 -39.61 -0.40 -1.73 16 6 C -0.15 -2.37 8.90 -39.56 -0.35 -2.72 16 7 C -0.02 -0.38 2.90 -104.65 -0.30 -0.69 16 8 C 0.19 2.60 3.23 -68.16 -0.22 2.38 16 9 H 0.11 1.20 8.05 -51.93 -0.42 0.78 16 10 C -0.08 -1.20 3.56 -90.14 -0.32 -1.52 16 11 H 0.12 1.52 8.14 -51.93 -0.42 1.09 16 12 C 0.41 8.57 6.83 36.01 0.25 8.82 16 13 O -0.50 -11.49 10.51 -19.05 -0.20 -11.69 16 14 O -0.25 -6.04 8.56 -20.71 -0.18 -6.22 16 15 C -0.38 -10.63 10.10 30.92 0.31 -10.31 16 16 H 0.11 3.45 7.09 -52.49 -0.37 3.08 16 17 C 0.07 1.86 5.49 -17.53 -0.10 1.76 16 18 N -0.87 -25.34 13.96 55.48 0.77 -24.56 16 19 Si 0.90 20.81 28.62 -169.99 -4.86 15.95 16 20 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 22 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 23 C -0.15 -2.14 5.85 -26.74 -0.16 -2.29 16 24 C 0.52 7.69 6.77 -10.86 -0.07 7.62 16 25 O -0.53 -8.84 14.69 5.56 0.08 -8.76 16 26 N -0.58 -7.49 2.39 -158.67 -0.38 -7.87 16 27 C 0.09 0.95 6.87 -67.93 -0.47 0.48 16 28 C -0.19 -2.11 9.78 -26.69 -0.26 -2.37 16 29 C -0.19 -1.91 10.35 -26.70 -0.28 -2.19 16 30 C -0.08 -1.30 6.99 -39.43 -0.28 -1.58 16 31 H 0.05 0.65 7.66 -51.93 -0.40 0.25 16 32 H 0.09 0.86 8.14 -51.92 -0.42 0.44 16 33 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 34 H 0.12 1.58 6.30 -52.48 -0.33 1.25 16 35 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 36 H 0.11 1.70 6.26 -52.49 -0.33 1.38 16 37 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.11 1.52 8.14 -51.93 -0.42 1.10 16 39 H 0.11 1.81 7.68 -51.93 -0.40 1.41 16 40 H 0.13 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.13 1.81 5.29 -51.93 -0.27 1.54 16 42 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.12 1.92 8.05 -52.48 -0.42 1.50 16 LS Contribution 371.14 15.07 5.59 5.59 Total: -1.00 -32.90 371.14 -7.50 -40.40 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -5.86 Total: 7.26 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -2.27 Total: -4.76 kcal Atomic # 7 Polarization: -32.83 SS G_CDS: 0.39 Total: -32.43 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -0.50 Total: -32.01 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.86 Total: 15.95 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.90 -7.50 -40.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776455629.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.134 kcal (2) G-P(sol) polarization free energy of solvation -32.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds