Wall clock time and date at job start Wed Apr 1 2020 03:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35902 * 116.99830 * 2 1 4 4 C 1.38744 * 120.05556 * 0.02562 * 3 2 1 5 5 C 1.38129 * 119.94481 * 180.02562 * 4 3 2 6 6 C 1.38282 * 120.05249 * 0.02608 * 5 4 3 7 7 C 1.38247 * 120.11601 * 359.97438 * 6 5 4 8 8 C 1.50693 * 119.97565 * 179.97438 * 7 6 5 9 9 H 1.08997 * 110.29188 * 159.47952 * 8 7 6 10 10 C 1.54485 * 110.24440 * 281.45611 * 8 7 6 11 11 H 1.08997 * 110.96657 * 211.70303 * 10 8 7 12 12 C 1.50703 * 110.96867 * 335.46357 * 10 8 7 13 13 O 1.21210 * 119.99780 * 353.83271 * 12 10 8 14 14 O 1.34304 * 119.99896 * 173.83514 * 12 10 8 15 15 C 1.34928 * 117.00038 * 179.97438 * 14 12 10 16 16 H 1.08001 * 119.99541 * 0.02562 * 15 14 12 17 17 C 1.38745 * 120.00167 * 179.97438 * 15 14 12 18 18 N 1.31448 * 120.00111 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 120.00076 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47152 * 89.99445 * 19 17 15 21 21 H 1.48493 * 109.47177 * 209.99604 * 19 17 15 22 22 H 1.48494 * 109.47018 * 329.99809 * 19 17 15 23 23 C 1.54627 * 101.76594 * 93.58316 * 10 8 7 24 24 C 1.51283 * 104.19534 * 24.80047 * 23 10 8 25 25 O 1.21277 * 124.93853 * 163.78712 * 24 23 10 26 26 N 1.34417 * 110.11678 * 343.74279 * 24 23 10 27 27 C 1.46502 * 124.35146 * 179.57049 * 26 24 23 28 28 C 1.53006 * 117.49652 * 8.72865 * 27 26 24 29 29 C 1.52996 * 117.49853 * 300.07109 * 27 26 24 30 30 C 1.38166 * 120.04991 * 0.23514 * 7 6 5 31 31 H 1.08994 * 109.46817 * 60.00133 * 1 2 3 32 32 H 1.09007 * 109.46855 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47191 * 299.99646 * 1 2 3 34 34 H 1.08003 * 120.03057 * 0.04112 * 4 3 2 35 35 H 1.08002 * 119.97118 * 179.97438 * 5 4 3 36 36 H 1.07998 * 119.94606 * 179.97438 * 6 5 4 37 37 H 0.96994 * 119.99850 * 180.02562 * 18 17 15 38 38 H 1.09005 * 110.48027 * 143.47533 * 23 10 8 39 39 H 1.09000 * 110.48552 * 266.11612 * 23 10 8 40 40 H 1.08996 * 115.54796 * 154.39184 * 27 26 24 41 41 H 1.08997 * 117.49329 * 359.97438 * 28 27 26 42 42 H 1.08991 * 117.49400 * 145.01663 * 28 27 26 43 43 H 1.09006 * 117.49490 * 214.97790 * 29 27 26 44 44 H 1.08995 * 117.50157 * 359.96795 * 29 27 26 45 45 H 1.08006 * 120.02597 * 179.74335 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3752 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3018 3.6758 -0.0016 7 6 4.0560 2.5171 -0.0022 8 6 5.5607 2.5982 -0.0045 9 1 5.9902 1.6627 0.3537 10 6 6.0769 2.9137 -1.4260 11 1 7.0501 2.4542 -1.5985 12 6 5.0829 2.4748 -2.4704 13 8 4.0955 1.8524 -2.1436 14 8 5.2913 2.7734 -3.7631 15 6 4.3634 2.3506 -4.6467 16 1 3.5012 1.7991 -4.3019 17 6 4.5163 2.6253 -5.9981 18 7 3.6126 2.2130 -6.8590 19 14 6.0072 3.5799 -6.5944 20 1 7.1048 2.6330 -6.9167 21 1 5.6467 4.3521 -7.8104 22 1 6.4554 4.5133 -5.5300 23 6 6.1920 4.4551 -1.3848 24 6 6.3658 4.7750 0.0836 25 8 6.7666 5.8326 0.5214 26 7 6.0104 3.7168 0.8325 27 6 6.0655 3.6841 2.2961 28 6 6.3629 4.9980 3.0214 29 6 7.4283 3.9008 2.9568 30 6 3.4311 1.2849 -0.0060 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 0.2128 2.3203 0.0016 35 1 1.3339 4.5114 0.0000 36 1 3.7922 4.6380 -0.0025 37 1 3.7197 2.4047 -7.8037 38 1 7.0606 4.7880 -1.9531 39 1 5.2828 4.9160 -1.7707 40 1 5.3779 2.9883 2.7769 41 1 6.5181 5.8866 2.4095 42 1 5.8714 5.1663 3.9795 43 1 7.6372 3.3477 3.8726 44 1 8.2840 4.0672 2.3026 45 1 4.0206 0.3799 -0.0106 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776455629.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:27 Heat of formation + Delta-G solvation = -76.520091 kcal Electronic energy + Delta-G solvation = -31614.750749 eV Core-core repulsion = 27371.771442 eV Total energy + Delta-G solvation = -4242.979307 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.62162 -40.86078 -40.72347 -38.81793 -37.63544 -37.28939 -36.76980 -34.43676 -32.47341 -32.27423 -31.00386 -28.70528 -28.06912 -27.48868 -24.90624 -23.86516 -23.58801 -23.21402 -22.41773 -21.19862 -20.27416 -20.02667 -19.14157 -18.33976 -17.98747 -17.25871 -17.10299 -16.98337 -16.71586 -16.54955 -16.31271 -16.20478 -15.56175 -15.51766 -15.22489 -14.82638 -14.66116 -14.49382 -14.30526 -14.24937 -14.09898 -13.75369 -13.55208 -13.12964 -13.06659 -12.79095 -12.66866 -12.51195 -12.39590 -12.26012 -12.21107 -12.09123 -11.87102 -11.78871 -11.66430 -11.35054 -11.12060 -10.77669 -10.63947 -9.65326 -9.21081 -9.01552 -8.48646 -6.32936 0.43211 0.64047 1.32103 1.35628 1.36951 1.53972 1.61619 1.65836 2.27626 2.33190 2.45650 2.78361 2.92362 2.97478 3.27967 3.33240 3.62949 3.68133 3.90082 3.91888 4.01974 4.05822 4.13291 4.17136 4.27312 4.34959 4.38152 4.42920 4.45314 4.57179 4.64050 4.69972 4.71099 4.76367 4.81802 4.83307 5.04888 5.14830 5.31053 5.42407 5.50295 5.57625 5.58714 5.71195 5.88998 5.93623 5.95140 6.56172 6.64222 6.90730 7.00077 7.68035 8.64186 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008150 B = 0.005336 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3434.798780 B = 5246.437068 C = 7970.910341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.340 6.340 3 C 0.106 3.894 4 C -0.215 4.215 5 C -0.096 4.096 6 C -0.160 4.160 7 C -0.027 4.027 8 C 0.197 3.803 9 H 0.136 0.864 10 C -0.071 4.071 11 H 0.160 0.840 12 C 0.417 3.583 13 O -0.523 6.523 14 O -0.258 6.258 15 C -0.390 4.390 16 H 0.059 0.941 17 C 0.015 3.985 18 N -0.922 5.922 19 Si 0.974 3.026 20 H -0.261 1.261 21 H -0.274 1.274 22 H -0.246 1.246 23 C -0.145 4.145 24 C 0.527 3.473 25 O -0.549 6.549 26 N -0.572 5.572 27 C 0.074 3.926 28 C -0.197 4.197 29 C -0.173 4.173 30 C -0.097 4.097 31 H 0.047 0.953 32 H 0.119 0.881 33 H 0.070 0.930 34 H 0.138 0.862 35 H 0.133 0.867 36 H 0.107 0.893 37 H 0.286 0.714 38 H 0.132 0.868 39 H 0.098 0.902 40 H 0.146 0.854 41 H 0.104 0.896 42 H 0.114 0.886 43 H 0.126 0.874 44 H 0.083 0.917 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.380 0.593 19.035 19.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.255 6.255 3 C 0.061 3.939 4 C -0.233 4.233 5 C -0.114 4.114 6 C -0.179 4.179 7 C -0.029 4.029 8 C 0.094 3.906 9 H 0.154 0.846 10 C -0.091 4.091 11 H 0.177 0.823 12 C 0.262 3.738 13 O -0.416 6.416 14 O -0.167 6.167 15 C -0.466 4.466 16 H 0.077 0.923 17 C -0.184 4.184 18 N -0.563 5.563 19 Si 0.795 3.205 20 H -0.185 1.185 21 H -0.199 1.199 22 H -0.169 1.169 23 C -0.185 4.185 24 C 0.316 3.684 25 O -0.429 6.429 26 N -0.302 5.302 27 C -0.029 4.029 28 C -0.234 4.234 29 C -0.212 4.212 30 C -0.116 4.116 31 H 0.066 0.934 32 H 0.137 0.863 33 H 0.088 0.912 34 H 0.156 0.844 35 H 0.151 0.849 36 H 0.125 0.875 37 H 0.095 0.905 38 H 0.150 0.850 39 H 0.116 0.884 40 H 0.164 0.836 41 H 0.122 0.878 42 H 0.133 0.867 43 H 0.144 0.856 44 H 0.102 0.898 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.331 0.764 19.218 19.520 hybrid contribution -0.592 0.233 -1.055 1.232 sum 2.739 0.997 18.164 18.396 Atomic orbital electron populations 1.23245 0.77015 1.05253 1.01659 1.86000 1.23086 1.27232 1.89164 1.19044 0.92690 0.84418 0.97736 1.21299 1.00443 0.92306 1.09275 1.20977 0.94613 0.97455 0.98331 1.20699 0.94202 0.97374 1.05620 1.19444 0.94633 0.92527 0.96246 1.20385 0.90298 0.91734 0.88231 0.84647 1.21840 0.99796 0.97353 0.90066 0.82250 1.23421 0.87089 0.80108 0.83165 1.90834 1.30652 1.39965 1.80101 1.83501 1.47765 1.68534 1.16944 1.20197 1.02547 1.36433 0.87412 0.92285 1.25459 1.01365 0.97505 0.94096 1.69714 1.36546 1.46243 1.03770 0.85191 0.77789 0.79164 0.78399 1.18543 1.19945 1.16900 1.22409 1.06834 0.94308 0.94965 1.20800 0.75668 0.82872 0.89066 1.90604 1.48116 1.26285 1.77859 1.47632 1.63038 1.13979 1.05529 1.21778 1.01118 1.02877 0.77101 1.23699 1.03142 0.94202 1.02405 1.23399 0.92264 1.02350 1.03144 1.19959 0.91390 0.97678 1.02580 0.93424 0.86297 0.91190 0.84436 0.84876 0.87456 0.90463 0.84966 0.88380 0.83617 0.87835 0.86729 0.85586 0.89821 0.85706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 9.81 113.37 1.11 1.62 16 2 O -0.34 -10.93 10.50 -92.45 -0.97 -11.90 16 3 C 0.11 3.60 6.69 22.50 0.15 3.75 16 4 C -0.21 -6.74 9.04 22.37 0.20 -6.54 16 5 C -0.10 -2.99 10.04 22.25 0.22 -2.77 16 6 C -0.16 -5.12 8.90 22.28 0.20 -4.92 16 7 C -0.03 -0.83 2.90 -19.88 -0.06 -0.89 16 8 C 0.20 4.90 3.23 44.70 0.14 5.04 16 9 H 0.14 2.63 8.05 -2.39 -0.02 2.61 16 10 C -0.07 -1.99 3.56 -10.48 -0.04 -2.03 16 11 H 0.16 3.35 8.14 -2.39 -0.02 3.34 16 12 C 0.42 17.20 6.83 71.24 0.49 17.69 16 13 O -0.52 -24.21 10.51 20.77 0.22 -23.99 16 14 O -0.26 -12.58 8.56 14.85 0.13 -12.45 16 15 C -0.39 -22.73 10.10 67.94 0.69 -22.04 16 16 H 0.06 3.95 7.09 -2.91 -0.02 3.93 16 17 C 0.01 0.84 5.49 84.87 0.47 1.31 16 18 N -0.92 -55.05 13.96 21.62 0.30 -54.75 16 19 Si 0.97 42.50 28.62 68.60 1.96 44.46 16 20 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 21 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 22 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 23 C -0.15 -3.99 5.85 30.59 0.18 -3.81 16 24 C 0.53 14.58 6.77 87.90 0.59 15.18 16 25 O -0.55 -17.88 14.69 -3.02 -0.04 -17.93 16 26 N -0.57 -13.47 2.39 -774.52 -1.85 -15.32 16 27 C 0.07 1.44 6.87 44.99 0.31 1.75 16 28 C -0.20 -3.98 9.78 30.62 0.30 -3.68 16 29 C -0.17 -2.94 10.35 30.62 0.32 -2.63 16 30 C -0.10 -3.22 6.99 22.37 0.16 -3.07 16 31 H 0.05 1.12 7.66 -2.39 -0.02 1.10 16 32 H 0.12 2.02 8.14 -2.38 -0.02 2.00 16 33 H 0.07 1.26 7.66 -2.39 -0.02 1.25 16 34 H 0.14 3.61 6.30 -2.91 -0.02 3.59 16 35 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 36 H 0.11 3.37 6.26 -2.91 -0.02 3.36 16 37 H 0.29 15.53 8.31 -92.71 -0.77 14.76 16 38 H 0.13 3.17 8.14 -2.38 -0.02 3.15 16 39 H 0.10 3.06 7.68 -2.39 -0.02 3.04 16 40 H 0.15 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.10 2.77 5.29 -2.39 -0.01 2.76 16 42 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.13 1.47 8.14 -2.38 -0.02 1.46 16 44 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.12 3.92 8.05 -2.91 -0.02 3.90 16 Total: -1.00 -74.81 371.14 6.20 -68.62 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: 1.02 Total: 29.29 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: 5.43 Total: -6.03 kcal Atomic # 7 Polarization: -68.51 SS G_CDS: -1.55 Total: -70.07 kcal Atomic # 8 Polarization: -65.60 SS G_CDS: -0.67 Total: -66.27 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 1.96 Total: 44.46 kcal Total: -74.81 6.20 -68.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776455629.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.903 kcal (2) G-P(sol) polarization free energy of solvation -74.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds