Wall clock time and date at job start Wed Apr 1 2020 03:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.78377 * 2 1 4 4 C 1.51262 * 109.63100 * 239.51417 * 2 1 3 5 5 O 1.20765 * 120.85017 * 8.91422 * 4 2 1 6 6 C 1.51272 * 118.30222 * 188.94372 * 4 2 1 7 7 C 1.53223 * 108.53893 * 51.34366 * 6 4 2 8 8 C 1.52960 * 109.40636 * 305.37759 * 7 6 4 9 9 H 1.09002 * 109.40995 * 303.56178 * 8 7 6 10 10 C 1.50700 * 109.41326 * 183.70252 * 8 7 6 11 11 O 1.21283 * 119.99988 * 326.25299 * 10 8 7 12 12 N 1.34780 * 119.99697 * 146.24818 * 10 8 7 13 13 S 1.65600 * 119.99745 * 180.02562 * 12 10 8 14 14 O 1.42101 * 104.27658 * 181.07367 * 13 12 10 15 15 O 1.42098 * 104.27630 * 308.92884 * 13 12 10 16 16 C 1.81401 * 104.44904 * 65.00057 * 13 12 10 17 17 C 1.53002 * 109.46969 * 179.97438 * 16 13 12 18 18 C 1.50700 * 109.47302 * 180.02562 * 17 16 13 19 19 H 1.08007 * 119.99749 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00671 * 180.02562 * 18 17 16 21 21 N 1.31519 * 119.99539 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00545 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47225 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47250 * 119.99863 * 22 20 18 25 25 H 1.48503 * 109.47197 * 239.99833 * 22 20 18 26 26 C 1.52950 * 109.81677 * 63.59430 * 8 7 6 27 27 C 1.52999 * 109.48311 * 56.38606 * 26 8 7 28 28 C 1.53005 * 109.48246 * 176.42509 * 26 8 7 29 29 H 1.09000 * 109.46982 * 180.48466 * 1 2 3 30 30 H 1.08996 * 109.47539 * 300.48498 * 1 2 3 31 31 H 1.09010 * 109.46786 * 60.48586 * 1 2 3 32 32 H 1.09004 * 109.62287 * 291.62958 * 6 4 2 33 33 H 1.09004 * 109.62650 * 171.06232 * 6 4 2 34 34 H 1.08995 * 109.47927 * 185.39108 * 7 6 4 35 35 H 1.09000 * 109.47937 * 65.35285 * 7 6 4 36 36 H 0.96997 * 120.00063 * 0.02562 * 12 10 8 37 37 H 1.08998 * 109.47426 * 299.99771 * 16 13 12 38 38 H 1.09000 * 109.47126 * 60.00122 * 16 13 12 39 39 H 1.08998 * 109.47018 * 300.00214 * 17 16 13 40 40 H 1.09000 * 109.46939 * 60.00201 * 17 16 13 41 41 H 0.96999 * 120.00134 * 179.97438 * 21 20 18 42 42 H 1.09002 * 109.47256 * 59.99735 * 27 26 8 43 43 H 1.09004 * 109.47458 * 179.97438 * 27 26 8 44 44 H 1.08999 * 109.46885 * 299.99390 * 27 26 8 45 45 H 1.08996 * 109.47267 * 55.06062 * 28 26 8 46 46 H 1.08996 * 109.47697 * 175.06614 * 28 26 8 47 47 H 1.09009 * 109.46771 * 295.06591 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0381 -0.7228 -1.2277 5 8 1.2815 -1.0548 -2.1084 6 6 3.5183 -1.0197 -1.3239 7 6 3.9608 -1.7145 -0.0320 8 6 3.5675 -0.8527 1.1690 9 1 4.0038 0.1403 1.0606 10 6 4.0823 -1.4908 2.4335 11 8 4.1346 -2.6990 2.5252 12 7 4.4847 -0.7187 3.4623 13 16 5.0510 -1.4198 4.8516 14 8 5.3498 -0.3212 5.7019 15 8 4.0491 -2.3651 5.2006 16 6 6.5740 -2.2645 4.3440 17 6 7.1999 -2.9591 5.5551 18 6 8.4654 -3.6604 5.1336 19 1 8.7910 -3.6148 4.1048 20 6 9.2076 -4.3601 6.0612 21 7 8.8114 -4.4151 7.3140 22 14 10.7767 -5.2287 5.5389 23 1 11.0009 -5.0148 4.0866 24 1 11.9248 -4.6792 6.3037 25 1 10.6514 -6.6832 5.8110 26 6 2.0446 -0.7319 1.2440 27 6 1.4244 -2.1291 1.3071 28 6 1.6563 0.0561 2.4967 29 1 -0.3633 -1.0276 0.0087 30 1 -0.3634 0.5213 0.8855 31 1 -0.3633 0.5063 -0.8944 32 1 4.0713 -0.0884 -1.4466 33 1 3.7058 -1.6748 -2.1747 34 1 5.0423 -1.8497 -0.0439 35 1 3.4735 -2.6867 0.0432 36 1 4.4427 0.2476 3.3890 37 1 6.3409 -3.0060 3.5798 38 1 7.2767 -1.5355 3.9405 39 1 7.4330 -2.2173 6.3190 40 1 6.4973 -3.6881 5.9590 41 1 9.3333 -4.9077 7.9666 42 1 1.7915 -2.6500 2.1914 43 1 0.3391 -2.0428 1.3610 44 1 1.7006 -2.6899 0.4142 45 1 2.1680 1.0185 2.4938 46 1 0.5784 0.2178 2.5048 47 1 1.9460 -0.5066 3.3842 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781538853.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:06 Heat of formation + Delta-G solvation = -171.790445 kcal Electronic energy + Delta-G solvation = -29886.188106 eV Core-core repulsion = 25774.521518 eV Total energy + Delta-G solvation = -4111.666589 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.67101 -39.81568 -37.56518 -36.72083 -35.67162 -34.57312 -34.03769 -33.92652 -31.36191 -31.20335 -28.22480 -27.72407 -25.91318 -25.66603 -23.54783 -21.71905 -21.35870 -20.68207 -19.46960 -18.54407 -17.78969 -17.57266 -16.68675 -16.51152 -16.14520 -16.05632 -15.55861 -15.19251 -15.15881 -14.71478 -14.55540 -14.36539 -13.87716 -13.80396 -13.47025 -13.19279 -12.93745 -12.64847 -12.58222 -12.50333 -12.35498 -12.16199 -12.02886 -11.84941 -11.83928 -11.77501 -11.69342 -11.65842 -11.21187 -11.11502 -11.03115 -11.00996 -10.85417 -10.84679 -10.43914 -10.37961 -10.08639 -9.73854 -9.70226 -9.20346 -8.52745 -6.14804 -4.20376 0.44482 1.58993 1.97737 2.66685 3.24543 3.31820 3.35259 3.59635 3.84818 4.01775 4.02964 4.10081 4.31767 4.35257 4.54878 4.60292 4.64037 4.73749 4.80842 4.86952 4.92705 4.95663 5.05498 5.12328 5.20699 5.30715 5.43598 5.46306 5.50493 5.53475 5.54583 5.57802 5.63522 5.67322 5.68681 5.78913 5.85178 5.96841 6.15143 6.41199 6.57010 7.13581 7.24935 7.31375 7.38874 7.78351 8.13676 8.82827 9.44474 10.96364 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018774 B = 0.002871 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.054608 B = 9749.999052 C =10698.338915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 H 0.108 0.892 4 C 0.364 3.636 5 O -0.451 6.451 6 C -0.168 4.168 7 C -0.107 4.107 8 C -0.105 4.105 9 H 0.105 0.895 10 C 0.542 3.458 11 O -0.481 6.481 12 N -1.059 6.059 13 S 2.562 3.438 14 O -0.955 6.955 15 O -0.937 6.937 16 C -0.575 4.575 17 C 0.029 3.971 18 C -0.519 4.519 19 H 0.063 0.937 20 C 0.058 3.942 21 N -0.890 5.890 22 Si 0.901 3.099 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 C -0.041 4.041 27 C -0.161 4.161 28 C -0.159 4.159 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.428 0.572 37 H 0.131 0.869 38 H 0.121 0.879 39 H 0.034 0.966 40 H 0.036 0.964 41 H 0.265 0.735 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.071 0.929 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.530 13.146 -16.376 24.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.147 4.147 3 H 0.126 0.874 4 C 0.239 3.761 5 O -0.324 6.324 6 C -0.206 4.206 7 C -0.145 4.145 8 C -0.128 4.128 9 H 0.123 0.877 10 C 0.328 3.672 11 O -0.352 6.352 12 N -0.820 5.820 13 S 2.663 3.337 14 O -0.945 6.945 15 O -0.927 6.927 16 C -0.710 4.710 17 C -0.010 4.010 18 C -0.558 4.558 19 H 0.081 0.919 20 C -0.145 4.145 21 N -0.528 5.528 22 Si 0.728 3.272 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.207 1.207 26 C -0.041 4.041 27 C -0.218 4.218 28 C -0.216 4.216 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.119 0.881 33 H 0.113 0.887 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.263 0.737 37 H 0.150 0.850 38 H 0.139 0.861 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.075 0.925 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.090 0.910 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.346 12.071 -15.772 24.501 hybrid contribution 1.437 0.060 -0.567 1.546 sum -12.910 12.130 -16.339 24.099 Atomic orbital electron populations 1.21787 0.92742 1.03255 1.02315 1.21905 0.98317 1.00773 0.93680 0.87448 1.24870 0.90883 0.74622 0.85707 1.90404 1.60076 1.42242 1.39640 1.22330 0.94906 1.03371 1.00001 1.21539 1.03079 0.99532 0.90344 1.21603 0.96892 1.01459 0.92844 0.87721 1.20393 0.75075 0.87133 0.84622 1.90914 1.50060 1.13177 1.81022 1.55528 1.72433 1.20121 1.33900 1.06795 0.78507 0.75191 0.73240 1.93593 1.86225 1.52607 1.62089 1.93599 1.56028 1.63029 1.80051 1.30339 1.15713 1.12487 1.12467 1.18994 0.97183 0.95929 0.88890 1.21007 1.06738 1.32438 0.95661 0.91905 1.25068 0.98264 0.96275 0.94885 1.69964 1.39153 1.41648 1.02049 0.86390 0.82639 0.79380 0.78747 1.19608 1.20784 1.20746 1.20422 0.91744 0.97099 0.94880 1.22195 1.01235 0.94635 1.03686 1.22138 1.02926 1.00009 0.96502 0.91557 0.91511 0.91954 0.88058 0.88652 0.89565 0.89155 0.73694 0.85042 0.86057 0.94792 0.94589 0.92536 0.90595 0.91491 0.92027 0.91733 0.91016 0.91531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 7.87 37.16 0.29 -0.67 16 2 C -0.13 -0.80 2.26 -91.38 -0.21 -1.01 16 3 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 4 C 0.36 2.92 5.60 -28.48 -0.16 2.76 16 5 O -0.45 -5.16 16.86 6.00 0.10 -5.06 16 6 C -0.17 -1.03 6.17 -27.49 -0.17 -1.20 16 7 C -0.11 -0.80 4.53 -26.64 -0.12 -0.92 16 8 C -0.10 -0.79 1.76 -91.82 -0.16 -0.95 16 9 H 0.10 0.42 8.12 -51.93 -0.42 0.00 16 10 C 0.54 6.30 4.88 -10.98 -0.05 6.25 16 11 O -0.48 -7.50 13.24 -11.58 -0.15 -7.65 16 12 N -1.06 -11.99 4.91 31.22 0.15 -11.84 16 13 S 2.56 44.29 5.11 -107.50 -0.55 43.74 16 14 O -0.95 -18.17 18.08 -57.54 -1.04 -19.21 16 15 O -0.94 -19.60 17.04 -64.79 -1.10 -20.71 16 16 C -0.58 -11.01 5.82 37.16 0.22 -10.79 16 17 C 0.03 0.74 4.98 -27.88 -0.14 0.61 16 18 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 19 H 0.06 1.64 7.74 -52.48 -0.41 1.24 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 22 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 C -0.04 -0.30 0.32 -154.41 -0.05 -0.35 16 27 C -0.16 -1.53 7.05 37.16 0.26 -1.27 16 28 C -0.16 -1.11 7.76 37.16 0.29 -0.82 16 29 H 0.07 0.51 6.31 -51.93 -0.33 0.19 16 30 H 0.07 0.36 6.55 -51.93 -0.34 0.02 16 31 H 0.06 0.44 8.04 -51.92 -0.42 0.02 16 32 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.09 0.82 6.03 -51.93 -0.31 0.51 16 36 H 0.43 3.04 8.77 -34.47 -0.30 2.73 16 37 H 0.13 2.45 7.19 -51.93 -0.37 2.08 16 38 H 0.12 1.98 8.14 -51.92 -0.42 1.55 16 39 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.08 0.91 6.60 -51.93 -0.34 0.57 16 43 H 0.07 0.57 6.34 -51.93 -0.33 0.24 16 44 H 0.06 0.59 5.61 -51.93 -0.29 0.30 16 45 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.07 0.44 6.42 -51.93 -0.33 0.10 16 47 H 0.07 0.61 6.95 -51.92 -0.36 0.25 16 LS Contribution 377.08 15.07 5.68 5.68 Total: -1.00 -37.32 377.08 -8.68 -46.00 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -7.08 Total: -0.01 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: -0.41 Total: -21.44 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.89 Total: -37.45 kcal Atomic # 8 Polarization: -50.44 SS G_CDS: -2.20 Total: -52.63 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 44.29 SS G_CDS: -0.55 Total: 43.74 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.32 -8.68 -46.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781538853.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.788 kcal (2) G-P(sol) polarization free energy of solvation -37.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds