Wall clock time and date at job start Wed Apr 1 2020 03:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.78377 * 2 1 4 4 C 1.51262 * 109.63100 * 239.51417 * 2 1 3 5 5 O 1.20765 * 120.85017 * 8.91422 * 4 2 1 6 6 C 1.51272 * 118.30222 * 188.94372 * 4 2 1 7 7 C 1.53223 * 108.53893 * 51.34366 * 6 4 2 8 8 C 1.52960 * 109.40636 * 305.37759 * 7 6 4 9 9 H 1.09002 * 109.40995 * 303.56178 * 8 7 6 10 10 C 1.50700 * 109.41326 * 183.70252 * 8 7 6 11 11 O 1.21283 * 119.99988 * 326.25299 * 10 8 7 12 12 N 1.34780 * 119.99697 * 146.24818 * 10 8 7 13 13 S 1.65600 * 119.99745 * 180.02562 * 12 10 8 14 14 O 1.42101 * 104.27658 * 181.07367 * 13 12 10 15 15 O 1.42098 * 104.27630 * 308.92884 * 13 12 10 16 16 C 1.81401 * 104.44904 * 65.00057 * 13 12 10 17 17 C 1.53002 * 109.46969 * 179.97438 * 16 13 12 18 18 C 1.50700 * 109.47302 * 180.02562 * 17 16 13 19 19 H 1.08007 * 119.99749 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00671 * 180.02562 * 18 17 16 21 21 N 1.31519 * 119.99539 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00545 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47225 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47250 * 119.99863 * 22 20 18 25 25 H 1.48503 * 109.47197 * 239.99833 * 22 20 18 26 26 C 1.52950 * 109.81677 * 63.59430 * 8 7 6 27 27 C 1.52999 * 109.48311 * 56.38606 * 26 8 7 28 28 C 1.53005 * 109.48246 * 176.42509 * 26 8 7 29 29 H 1.09000 * 109.46982 * 180.48466 * 1 2 3 30 30 H 1.08996 * 109.47539 * 300.48498 * 1 2 3 31 31 H 1.09010 * 109.46786 * 60.48586 * 1 2 3 32 32 H 1.09004 * 109.62287 * 291.62958 * 6 4 2 33 33 H 1.09004 * 109.62650 * 171.06232 * 6 4 2 34 34 H 1.08995 * 109.47927 * 185.39108 * 7 6 4 35 35 H 1.09000 * 109.47937 * 65.35285 * 7 6 4 36 36 H 0.96997 * 120.00063 * 0.02562 * 12 10 8 37 37 H 1.08998 * 109.47426 * 299.99771 * 16 13 12 38 38 H 1.09000 * 109.47126 * 60.00122 * 16 13 12 39 39 H 1.08998 * 109.47018 * 300.00214 * 17 16 13 40 40 H 1.09000 * 109.46939 * 60.00201 * 17 16 13 41 41 H 0.96999 * 120.00134 * 179.97438 * 21 20 18 42 42 H 1.09002 * 109.47256 * 59.99735 * 27 26 8 43 43 H 1.09004 * 109.47458 * 179.97438 * 27 26 8 44 44 H 1.08999 * 109.46885 * 299.99390 * 27 26 8 45 45 H 1.08996 * 109.47267 * 55.06062 * 28 26 8 46 46 H 1.08996 * 109.47697 * 175.06614 * 28 26 8 47 47 H 1.09009 * 109.46771 * 295.06591 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0381 -0.7228 -1.2277 5 8 1.2815 -1.0548 -2.1084 6 6 3.5183 -1.0197 -1.3239 7 6 3.9608 -1.7145 -0.0320 8 6 3.5675 -0.8527 1.1690 9 1 4.0038 0.1403 1.0606 10 6 4.0823 -1.4908 2.4335 11 8 4.1346 -2.6990 2.5252 12 7 4.4847 -0.7187 3.4623 13 16 5.0510 -1.4198 4.8516 14 8 5.3498 -0.3212 5.7019 15 8 4.0491 -2.3651 5.2006 16 6 6.5740 -2.2645 4.3440 17 6 7.1999 -2.9591 5.5551 18 6 8.4654 -3.6604 5.1336 19 1 8.7910 -3.6148 4.1048 20 6 9.2076 -4.3601 6.0612 21 7 8.8114 -4.4151 7.3140 22 14 10.7767 -5.2287 5.5389 23 1 11.0009 -5.0148 4.0866 24 1 11.9248 -4.6792 6.3037 25 1 10.6514 -6.6832 5.8110 26 6 2.0446 -0.7319 1.2440 27 6 1.4244 -2.1291 1.3071 28 6 1.6563 0.0561 2.4967 29 1 -0.3633 -1.0276 0.0087 30 1 -0.3634 0.5213 0.8855 31 1 -0.3633 0.5063 -0.8944 32 1 4.0713 -0.0884 -1.4466 33 1 3.7058 -1.6748 -2.1747 34 1 5.0423 -1.8497 -0.0439 35 1 3.4735 -2.6867 0.0432 36 1 4.4427 0.2476 3.3890 37 1 6.3409 -3.0060 3.5798 38 1 7.2767 -1.5355 3.9405 39 1 7.4330 -2.2173 6.3190 40 1 6.4973 -3.6881 5.9590 41 1 9.3333 -4.9077 7.9666 42 1 1.7915 -2.6500 2.1914 43 1 0.3391 -2.0428 1.3610 44 1 1.7006 -2.6899 0.4142 45 1 2.1680 1.0185 2.4938 46 1 0.5784 0.2178 2.5048 47 1 1.9460 -0.5066 3.3842 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781538853.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:05 Heat of formation + Delta-G solvation = -199.668955 kcal Electronic energy + Delta-G solvation = -29887.397009 eV Core-core repulsion = 25774.521518 eV Total energy + Delta-G solvation = -4112.875491 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.40891 -40.66730 -38.44038 -38.11039 -37.21125 -35.96102 -35.61919 -34.60522 -33.17981 -31.94422 -28.89174 -28.36002 -27.64803 -26.46130 -24.44313 -23.56381 -22.04340 -21.41580 -20.72844 -19.42904 -19.03383 -18.59322 -18.31295 -17.54895 -16.96477 -16.77334 -16.73627 -16.55102 -16.54632 -15.88660 -15.60893 -15.36041 -15.10093 -14.51811 -14.47750 -14.44963 -13.88226 -13.77689 -13.75639 -13.49735 -13.35628 -13.24320 -13.11845 -12.97754 -12.91895 -12.84432 -12.82781 -12.72047 -12.44495 -12.33699 -12.26579 -12.19998 -12.00780 -11.79862 -11.71037 -11.59807 -11.42548 -11.11929 -10.94261 -10.66994 -10.29363 -8.27999 -6.41971 -0.98867 0.97427 1.04101 1.40210 1.41373 1.46128 1.54562 2.36541 2.58028 2.96028 3.05731 3.09538 3.22636 3.45037 3.49692 3.69887 3.86291 4.02343 4.05034 4.08542 4.14828 4.20998 4.23762 4.35929 4.45244 4.58122 4.62816 4.69427 4.73731 4.80878 4.89989 4.97529 4.99486 5.03850 5.10127 5.14225 5.19468 5.22191 5.23377 5.25725 5.41855 5.48571 5.66171 5.74170 6.03175 6.47959 6.56713 6.71192 7.28236 8.84684 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018774 B = 0.002871 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.054608 B = 9749.999052 C =10698.338915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.120 4.120 3 H 0.148 0.852 4 C 0.363 3.637 5 O -0.493 6.493 6 C -0.161 4.161 7 C -0.108 4.108 8 C -0.098 4.098 9 H 0.159 0.841 10 C 0.540 3.460 11 O -0.523 6.523 12 N -1.034 6.034 13 S 2.596 3.404 14 O -0.972 6.972 15 O -0.979 6.979 16 C -0.580 4.580 17 C 0.022 3.978 18 C -0.539 4.539 19 H 0.075 0.925 20 C -0.004 4.004 21 N -0.934 5.934 22 Si 0.975 3.025 23 H -0.256 1.256 24 H -0.275 1.275 25 H -0.280 1.280 26 C -0.036 4.036 27 C -0.162 4.162 28 C -0.164 4.164 29 H 0.046 0.954 30 H 0.083 0.917 31 H 0.058 0.942 32 H 0.139 0.861 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.063 0.937 36 H 0.451 0.549 37 H 0.135 0.865 38 H 0.153 0.847 39 H 0.014 0.986 40 H 0.002 0.998 41 H 0.268 0.732 42 H 0.044 0.956 43 H 0.071 0.929 44 H 0.053 0.947 45 H 0.099 0.901 46 H 0.079 0.921 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.577 15.931 -18.627 27.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.138 4.138 3 H 0.166 0.834 4 C 0.241 3.759 5 O -0.369 6.369 6 C -0.198 4.198 7 C -0.146 4.146 8 C -0.121 4.121 9 H 0.177 0.823 10 C 0.328 3.672 11 O -0.396 6.396 12 N -0.802 5.802 13 S 2.695 3.305 14 O -0.962 6.962 15 O -0.969 6.969 16 C -0.713 4.713 17 C -0.017 4.017 18 C -0.578 4.578 19 H 0.093 0.907 20 C -0.202 4.202 21 N -0.573 5.573 22 Si 0.798 3.202 23 H -0.179 1.179 24 H -0.200 1.200 25 H -0.206 1.206 26 C -0.036 4.036 27 C -0.219 4.219 28 C -0.221 4.221 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.157 0.843 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.082 0.918 36 H 0.292 0.708 37 H 0.153 0.847 38 H 0.171 0.829 39 H 0.033 0.967 40 H 0.021 0.979 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.118 0.882 46 H 0.098 0.902 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -13.373 14.887 -18.015 26.926 hybrid contribution 1.032 -0.807 0.108 1.314 sum -12.341 14.080 -17.908 25.908 Atomic orbital electron populations 1.21795 0.93272 1.02251 1.02947 1.21931 0.97886 1.02311 0.91699 0.83415 1.25374 0.91566 0.73460 0.85525 1.90406 1.61146 1.44003 1.41335 1.22328 0.93841 1.04863 0.98765 1.21527 1.03414 0.98599 0.91049 1.21794 0.96861 1.03628 0.89809 0.82343 1.21285 0.73842 0.86652 0.85383 1.90913 1.51638 1.15474 1.81588 1.54937 1.71598 1.21543 1.32129 1.05450 0.77116 0.74234 0.73739 1.93563 1.86289 1.52660 1.63675 1.93551 1.56991 1.64785 1.81545 1.30245 1.17853 1.13368 1.09792 1.18825 0.96635 0.95199 0.91053 1.21514 1.07485 1.32454 0.96318 0.90651 1.26119 1.02141 0.97134 0.94821 1.70103 1.40928 1.42821 1.03450 0.85249 0.77976 0.77787 0.79154 1.17908 1.20002 1.20583 1.20390 0.91485 0.95700 0.96070 1.22190 1.01719 0.96257 1.01729 1.22221 1.04108 1.01074 0.94701 0.93509 0.89855 0.92261 0.84277 0.89147 0.88673 0.91830 0.70785 0.84707 0.82862 0.96731 0.97918 0.92322 0.93720 0.91054 0.92850 0.88190 0.90190 0.94187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 7.87 71.98 0.57 -1.07 16 2 C -0.12 -1.07 2.26 -11.28 -0.03 -1.10 16 3 H 0.15 0.25 8.14 -2.39 -0.02 0.23 16 4 C 0.36 4.95 5.60 29.46 0.17 5.11 16 5 O -0.49 -10.85 16.86 -1.46 -0.02 -10.88 16 6 C -0.16 -1.43 6.17 30.10 0.19 -1.25 16 7 C -0.11 -1.35 4.53 30.66 0.14 -1.21 16 8 C -0.10 -1.12 1.76 -11.57 -0.02 -1.14 16 9 H 0.16 0.18 8.12 -2.39 -0.02 0.16 16 10 C 0.54 11.58 4.88 87.66 0.43 12.01 16 11 O -0.52 -16.42 13.24 13.35 0.18 -16.24 16 12 N -1.03 -21.01 4.91 -173.53 -0.85 -21.86 16 13 S 2.60 89.17 5.11 -56.49 -0.29 88.88 16 14 O -0.97 -36.30 18.08 -127.65 -2.31 -38.61 16 15 O -0.98 -42.27 17.04 -120.72 -2.06 -44.33 16 16 C -0.58 -22.14 5.82 71.98 0.42 -21.72 16 17 C 0.02 1.15 4.98 29.85 0.15 1.30 16 18 C -0.54 -30.04 9.11 25.60 0.23 -29.81 16 19 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16 20 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 21 N -0.93 -56.86 13.29 21.45 0.28 -56.57 16 22 Si 0.97 43.36 29.54 68.60 2.03 45.39 16 23 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 25 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 26 C -0.04 -0.44 0.32 -52.12 -0.02 -0.45 16 27 C -0.16 -3.12 7.05 71.98 0.51 -2.61 16 28 C -0.16 -1.75 7.76 71.98 0.56 -1.19 16 29 H 0.05 0.70 6.31 -2.39 -0.02 0.69 16 30 H 0.08 0.64 6.55 -2.39 -0.02 0.63 16 31 H 0.06 0.72 8.04 -2.38 -0.02 0.70 16 32 H 0.14 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.09 1.05 8.14 -2.39 -0.02 1.04 16 35 H 0.06 1.15 6.03 -2.39 -0.01 1.14 16 36 H 0.45 4.55 8.77 -96.75 -0.85 3.70 16 37 H 0.13 5.05 7.19 -2.39 -0.02 5.03 16 38 H 0.15 4.73 8.14 -2.39 -0.02 4.71 16 39 H 0.01 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 41 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 42 H 0.04 1.13 6.60 -2.39 -0.02 1.12 16 43 H 0.07 1.25 6.34 -2.38 -0.02 1.23 16 44 H 0.05 1.08 5.61 -2.39 -0.01 1.07 16 45 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 46 H 0.08 0.73 6.42 -2.39 -0.02 0.72 16 47 H 0.04 0.66 6.95 -2.38 -0.02 0.65 16 Total: -1.00 -87.01 377.08 0.85 -86.16 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 0.15 Total: 10.93 kcal Atomic # 6 Polarization: -46.63 SS G_CDS: 3.75 Total: -42.88 kcal Atomic # 7 Polarization: -77.87 SS G_CDS: -0.57 Total: -78.43 kcal Atomic # 8 Polarization: -105.84 SS G_CDS: -4.21 Total: -110.05 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: 89.17 SS G_CDS: -0.29 Total: 88.88 kcal Total: -87.01 0.85 -86.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781538853.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.510 kcal (2) G-P(sol) polarization free energy of solvation -87.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds