Wall clock time and date at job start Wed Apr 1 2020 03:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20759 * 120.00098 * 2 1 4 4 C 1.50699 * 119.99920 * 179.97438 * 2 1 3 5 5 H 1.08996 * 112.84696 * 26.69967 * 4 2 1 6 6 C 1.53777 * 113.61847 * 255.49853 * 4 2 1 7 7 C 1.53779 * 87.08120 * 220.02329 * 6 4 2 8 8 H 1.09007 * 113.61296 * 270.79731 * 7 6 4 9 9 C 1.53000 * 113.61556 * 139.98214 * 7 6 4 10 10 C 1.50709 * 109.47029 * 85.86247 * 9 7 6 11 11 O 1.21284 * 120.00085 * 359.97438 * 10 9 7 12 12 N 1.34772 * 119.99747 * 180.02562 * 10 9 7 13 13 S 1.65599 * 120.00110 * 179.97438 * 12 10 9 14 14 O 1.42106 * 104.27393 * 308.92990 * 13 12 10 15 15 O 1.42100 * 104.28186 * 181.06991 * 13 12 10 16 16 C 1.81399 * 104.44810 * 64.99735 * 13 12 10 17 17 C 1.52998 * 109.47111 * 180.02562 * 16 13 12 18 18 C 1.50706 * 109.47348 * 180.02562 * 17 16 13 19 19 H 1.08005 * 119.99758 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00102 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00217 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47057 * 179.97438 * 22 20 18 24 24 H 1.48500 * 109.47389 * 300.00068 * 22 20 18 25 25 H 1.48504 * 109.47102 * 60.00417 * 22 20 18 26 26 C 1.53773 * 87.17638 * 25.39068 * 7 6 4 27 27 C 1.52999 * 113.61519 * 89.15652 * 26 7 6 28 28 C 1.53004 * 113.61762 * 220.06675 * 26 7 6 29 29 H 1.08998 * 109.47160 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47568 * 300.00313 * 1 2 3 31 31 H 1.09001 * 109.47023 * 60.00151 * 1 2 3 32 32 H 1.08997 * 113.61217 * 105.47203 * 6 4 2 33 33 H 1.09007 * 113.69110 * 334.58141 * 6 4 2 34 34 H 1.08998 * 109.46961 * 325.86100 * 9 7 6 35 35 H 1.08996 * 109.46996 * 205.86044 * 9 7 6 36 36 H 0.97002 * 120.00543 * 359.97438 * 12 10 9 37 37 H 1.09000 * 109.47241 * 60.00442 * 16 13 12 38 38 H 1.09002 * 109.47106 * 299.99999 * 16 13 12 39 39 H 1.09001 * 109.47671 * 60.00243 * 17 16 13 40 40 H 1.09006 * 109.47297 * 299.99963 * 17 16 13 41 41 H 0.97001 * 119.99646 * 359.97438 * 21 20 18 42 42 H 1.08999 * 109.46751 * 60.00819 * 27 26 7 43 43 H 1.08999 * 109.47245 * 180.02562 * 27 26 7 44 44 H 1.09001 * 109.47398 * 300.00436 * 27 26 7 45 45 H 1.08990 * 109.47185 * 59.99488 * 28 26 7 46 46 H 1.08996 * 109.47346 * 179.97438 * 28 26 7 47 47 H 1.09005 * 109.46507 * 299.99930 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 1 1.6949 -2.1205 -0.4504 6 6 2.8740 -1.6617 1.3648 7 6 4.1075 -2.1579 0.5921 8 1 4.0488 -3.2075 0.3035 9 6 5.4355 -1.7994 1.2619 10 6 5.7843 -2.8528 2.2817 11 8 5.0434 -3.7971 2.4559 12 7 6.9191 -2.7450 3.0007 13 16 7.3021 -3.9022 4.1217 14 8 6.1291 -4.0237 4.9147 15 8 8.5253 -3.4512 4.6872 16 6 7.5690 -5.4075 3.1453 17 6 7.9333 -6.5633 4.0792 18 6 8.1556 -7.8138 3.2680 19 1 8.0475 -7.7868 2.1937 20 6 8.4971 -8.9921 3.8972 21 7 8.6283 -9.0250 5.2054 22 14 8.7720 -10.5421 2.8916 23 1 9.1269 -11.6637 3.7980 24 1 7.5299 -10.8781 2.1503 25 1 9.8785 -10.3168 1.9272 26 6 3.7013 -1.1871 -0.5291 27 6 4.2985 0.2129 -0.3738 28 6 3.8877 -1.7616 -1.9349 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.3401 -2.4535 1.8901 33 1 3.0734 -0.7951 1.9954 34 1 5.3439 -0.8320 1.7556 35 1 6.2210 -1.7495 0.5078 36 1 7.5115 -1.9896 2.8617 37 1 8.3812 -5.2421 2.4374 38 1 6.6572 -5.6540 2.6012 39 1 7.1208 -6.7286 4.7869 40 1 8.8449 -6.3170 4.6237 41 1 8.4851 -8.2201 5.7275 42 1 5.3864 0.1465 -0.3796 43 1 3.9683 0.8425 -1.2001 44 1 3.9660 0.6473 0.5690 45 1 3.2783 -2.6585 -2.0446 46 1 3.5805 -1.0214 -2.6736 47 1 4.9370 -2.0144 -2.0878 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783125834.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:48 Heat of formation + Delta-G solvation = -145.936806 kcal Electronic energy + Delta-G solvation = -28776.595004 eV Core-core repulsion = 24666.049514 eV Total energy + Delta-G solvation = -4110.545491 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.54286 -39.97087 -38.19970 -36.79470 -35.71798 -34.52141 -34.24420 -31.70206 -31.48778 -31.05809 -29.84860 -27.69145 -25.37690 -25.06714 -23.01220 -22.07400 -21.68077 -19.90295 -19.40972 -18.59108 -17.97943 -17.52927 -16.75274 -16.44815 -16.23584 -15.68361 -15.53826 -15.43468 -15.21581 -14.81914 -14.42123 -13.91960 -13.78404 -13.65632 -13.61291 -13.14992 -13.06021 -12.89508 -12.68435 -12.58436 -12.46937 -12.41045 -12.13100 -12.07562 -11.83964 -11.79020 -11.72345 -11.32604 -11.24550 -11.06332 -10.93884 -10.78581 -10.57461 -10.52123 -10.39017 -10.27857 -10.14089 -10.00010 -9.38571 -8.70579 -8.46396 -6.48139 -4.20830 0.40749 1.57024 2.05054 2.64923 3.38870 3.41132 3.60099 3.67285 3.83561 3.97072 4.03142 4.29710 4.37360 4.40932 4.46841 4.55339 4.72911 4.79413 4.86816 4.93371 4.99876 5.05169 5.12521 5.15281 5.19438 5.27523 5.37641 5.40878 5.46538 5.48533 5.55365 5.57065 5.61356 5.68510 5.74625 5.77965 5.98906 6.05645 6.25200 6.29854 6.57969 6.94000 7.04842 7.20269 7.42906 7.94604 8.29091 8.71867 9.51189 10.91787 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016027 B = 0.002449 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.588747 B =11432.271253 C =12238.706234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.367 3.633 3 O -0.453 6.453 4 C -0.163 4.163 5 H 0.115 0.885 6 C -0.113 4.113 7 C -0.088 4.088 8 H 0.110 0.890 9 C -0.134 4.134 10 C 0.532 3.468 11 O -0.488 6.488 12 N -1.060 6.060 13 S 2.566 3.434 14 O -0.939 6.939 15 O -0.956 6.956 16 C -0.569 4.569 17 C 0.016 3.984 18 C -0.599 4.599 19 H 0.056 0.944 20 C 0.016 3.984 21 N -0.905 5.905 22 Si 1.074 2.926 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.286 1.286 26 C -0.065 4.065 27 C -0.123 4.123 28 C -0.139 4.139 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.429 0.571 37 H 0.122 0.878 38 H 0.132 0.868 39 H 0.027 0.973 40 H 0.025 0.975 41 H 0.270 0.730 42 H 0.049 0.951 43 H 0.059 0.941 44 H 0.072 0.928 45 H 0.059 0.941 46 H 0.055 0.945 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.279 20.089 -14.839 27.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.243 3.757 3 O -0.327 6.327 4 C -0.182 4.182 5 H 0.133 0.867 6 C -0.150 4.150 7 C -0.107 4.107 8 H 0.128 0.872 9 C -0.175 4.175 10 C 0.318 3.682 11 O -0.359 6.359 12 N -0.822 5.822 13 S 2.666 3.334 14 O -0.929 6.929 15 O -0.947 6.947 16 C -0.704 4.704 17 C -0.023 4.023 18 C -0.638 4.638 19 H 0.074 0.926 20 C -0.189 4.189 21 N -0.540 5.540 22 Si 0.901 3.099 23 H -0.205 1.205 24 H -0.212 1.212 25 H -0.213 1.213 26 C -0.065 4.065 27 C -0.179 4.179 28 C -0.196 4.196 29 H 0.100 0.900 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.264 0.736 37 H 0.140 0.860 38 H 0.151 0.849 39 H 0.045 0.955 40 H 0.043 0.957 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.103 18.557 -13.644 26.020 hybrid contribution -0.169 1.732 -0.814 1.922 sum -12.272 20.290 -14.458 27.773 Atomic orbital electron populations 1.22313 0.94840 1.04648 1.04528 1.24442 0.91639 0.89979 0.69684 1.90415 1.71228 1.35305 1.35725 1.23390 0.96593 0.97773 1.00433 0.86707 1.22874 0.96527 1.01588 0.94046 1.22508 0.92176 1.00594 0.95426 0.87232 1.21849 0.99941 0.98238 0.97487 1.20749 0.79062 0.87504 0.80869 1.90900 1.47600 1.32408 1.64966 1.55408 1.30753 1.41198 1.54826 1.06671 0.74366 0.76916 0.75485 1.93599 1.48281 1.85744 1.65253 1.93592 1.46030 1.80078 1.74953 1.30215 1.11042 1.15447 1.13652 1.19091 0.96940 0.92094 0.94148 1.21812 1.53016 0.94309 0.94671 0.92618 1.25986 0.93647 1.02042 0.97198 1.70785 1.45173 1.32381 1.05655 0.83473 0.76575 0.75104 0.74725 1.20530 1.21234 1.21287 1.21902 0.93250 0.96510 0.94807 1.21783 0.99023 0.93521 1.03615 1.21779 1.02290 1.00593 0.94941 0.90031 0.89147 0.89198 0.89731 0.89700 0.87707 0.87513 0.73631 0.85971 0.84934 0.95519 0.95727 0.91942 0.93186 0.92167 0.90928 0.92216 0.92589 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.00 10.33 36.00 0.37 -0.63 16 2 C 0.37 2.71 6.67 -29.04 -0.19 2.52 16 3 O -0.45 -4.60 13.22 6.00 0.08 -4.52 16 4 C -0.16 -1.12 3.50 -90.87 -0.32 -1.44 16 5 H 0.11 0.62 7.95 -51.93 -0.41 0.21 16 6 C -0.11 -0.94 6.83 -25.92 -0.18 -1.12 16 7 C -0.09 -0.74 2.62 -89.81 -0.24 -0.97 16 8 H 0.11 1.03 7.69 -51.93 -0.40 0.63 16 9 C -0.13 -1.07 4.29 -27.88 -0.12 -1.19 16 10 C 0.53 6.57 7.57 -10.98 -0.08 6.49 16 11 O -0.49 -7.96 13.89 -11.59 -0.16 -8.12 16 12 N -1.06 -12.86 5.60 31.22 0.17 -12.68 16 13 S 2.57 45.87 5.11 -107.50 -0.55 45.32 16 14 O -0.94 -20.26 17.04 -64.79 -1.10 -21.37 16 15 O -0.96 -18.74 18.08 -57.54 -1.04 -19.78 16 16 C -0.57 -11.29 5.82 37.16 0.22 -11.07 16 17 C 0.02 0.42 4.29 -27.88 -0.12 0.30 16 18 C -0.60 -16.93 9.11 -34.44 -0.31 -17.25 16 19 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 20 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 21 N -0.90 -27.79 13.65 55.43 0.76 -27.03 16 22 Si 1.07 24.97 29.90 -169.99 -5.08 19.88 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 26 C -0.06 -0.46 1.23 -153.60 -0.19 -0.65 16 27 C -0.12 -0.94 6.22 37.16 0.23 -0.71 16 28 C -0.14 -0.90 9.20 37.16 0.34 -0.55 16 29 H 0.08 0.28 7.99 -51.93 -0.41 -0.14 16 30 H 0.09 0.42 8.14 -51.92 -0.42 0.00 16 31 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.71 7.40 -51.93 -0.38 0.33 16 34 H 0.10 0.68 7.28 -51.93 -0.38 0.30 16 35 H 0.11 0.60 7.92 -51.93 -0.41 0.19 16 36 H 0.43 3.39 8.79 -34.46 -0.30 3.08 16 37 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 38 H 0.13 2.59 7.19 -51.92 -0.37 2.22 16 39 H 0.03 0.72 8.01 -51.93 -0.42 0.30 16 40 H 0.02 0.65 8.01 -51.93 -0.42 0.23 16 41 H 0.27 8.27 7.22 -40.82 -0.29 7.98 16 42 H 0.05 0.32 7.27 -51.93 -0.38 -0.06 16 43 H 0.06 0.51 7.46 -51.93 -0.39 0.13 16 44 H 0.07 0.63 5.69 -51.93 -0.30 0.34 16 45 H 0.06 0.36 7.95 -51.93 -0.41 -0.05 16 46 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 391.35 15.07 5.90 5.90 Total: -1.00 -38.41 391.35 -9.13 -47.54 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -7.41 Total: 0.76 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: -0.69 Total: -25.89 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.93 Total: -39.71 kcal Atomic # 8 Polarization: -51.57 SS G_CDS: -2.23 Total: -53.79 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -5.08 Total: 19.88 kcal Atomic # 16 Polarization: 45.87 SS G_CDS: -0.55 Total: 45.32 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -38.41 -9.13 -47.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783125834.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.396 kcal (2) G-P(sol) polarization free energy of solvation -38.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds