Wall clock time and date at job start Wed Apr 1 2020 03:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20759 * 120.00098 * 2 1 4 4 C 1.50699 * 119.99920 * 179.97438 * 2 1 3 5 5 H 1.08996 * 112.84696 * 26.69967 * 4 2 1 6 6 C 1.53777 * 113.61847 * 255.49853 * 4 2 1 7 7 C 1.53779 * 87.08120 * 220.02329 * 6 4 2 8 8 H 1.09007 * 113.61296 * 270.79731 * 7 6 4 9 9 C 1.53000 * 113.61556 * 139.98214 * 7 6 4 10 10 C 1.50709 * 109.47029 * 85.86247 * 9 7 6 11 11 O 1.21284 * 120.00085 * 359.97438 * 10 9 7 12 12 N 1.34772 * 119.99747 * 180.02562 * 10 9 7 13 13 S 1.65599 * 120.00110 * 179.97438 * 12 10 9 14 14 O 1.42106 * 104.27393 * 308.92990 * 13 12 10 15 15 O 1.42100 * 104.28186 * 181.06991 * 13 12 10 16 16 C 1.81399 * 104.44810 * 64.99735 * 13 12 10 17 17 C 1.52998 * 109.47111 * 180.02562 * 16 13 12 18 18 C 1.50706 * 109.47348 * 180.02562 * 17 16 13 19 19 H 1.08005 * 119.99758 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00102 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00217 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47057 * 179.97438 * 22 20 18 24 24 H 1.48500 * 109.47389 * 300.00068 * 22 20 18 25 25 H 1.48504 * 109.47102 * 60.00417 * 22 20 18 26 26 C 1.53773 * 87.17638 * 25.39068 * 7 6 4 27 27 C 1.52999 * 113.61519 * 89.15652 * 26 7 6 28 28 C 1.53004 * 113.61762 * 220.06675 * 26 7 6 29 29 H 1.08998 * 109.47160 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47568 * 300.00313 * 1 2 3 31 31 H 1.09001 * 109.47023 * 60.00151 * 1 2 3 32 32 H 1.08997 * 113.61217 * 105.47203 * 6 4 2 33 33 H 1.09007 * 113.69110 * 334.58141 * 6 4 2 34 34 H 1.08998 * 109.46961 * 325.86100 * 9 7 6 35 35 H 1.08996 * 109.46996 * 205.86044 * 9 7 6 36 36 H 0.97002 * 120.00543 * 359.97438 * 12 10 9 37 37 H 1.09000 * 109.47241 * 60.00442 * 16 13 12 38 38 H 1.09002 * 109.47106 * 299.99999 * 16 13 12 39 39 H 1.09001 * 109.47671 * 60.00243 * 17 16 13 40 40 H 1.09006 * 109.47297 * 299.99963 * 17 16 13 41 41 H 0.97001 * 119.99646 * 359.97438 * 21 20 18 42 42 H 1.08999 * 109.46751 * 60.00819 * 27 26 7 43 43 H 1.08999 * 109.47245 * 180.02562 * 27 26 7 44 44 H 1.09001 * 109.47398 * 300.00436 * 27 26 7 45 45 H 1.08990 * 109.47185 * 59.99488 * 28 26 7 46 46 H 1.08996 * 109.47346 * 179.97438 * 28 26 7 47 47 H 1.09005 * 109.46507 * 299.99930 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 1 1.6949 -2.1205 -0.4504 6 6 2.8740 -1.6617 1.3648 7 6 4.1075 -2.1579 0.5921 8 1 4.0488 -3.2075 0.3035 9 6 5.4355 -1.7994 1.2619 10 6 5.7843 -2.8528 2.2817 11 8 5.0434 -3.7971 2.4559 12 7 6.9191 -2.7450 3.0007 13 16 7.3021 -3.9022 4.1217 14 8 6.1291 -4.0237 4.9147 15 8 8.5253 -3.4512 4.6872 16 6 7.5690 -5.4075 3.1453 17 6 7.9333 -6.5633 4.0792 18 6 8.1556 -7.8138 3.2680 19 1 8.0475 -7.7868 2.1937 20 6 8.4971 -8.9921 3.8972 21 7 8.6283 -9.0250 5.2054 22 14 8.7720 -10.5421 2.8916 23 1 9.1269 -11.6637 3.7980 24 1 7.5299 -10.8781 2.1503 25 1 9.8785 -10.3168 1.9272 26 6 3.7013 -1.1871 -0.5291 27 6 4.2985 0.2129 -0.3738 28 6 3.8877 -1.7616 -1.9349 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.3401 -2.4535 1.8901 33 1 3.0734 -0.7951 1.9954 34 1 5.3439 -0.8320 1.7556 35 1 6.2210 -1.7495 0.5078 36 1 7.5115 -1.9896 2.8617 37 1 8.3812 -5.2421 2.4374 38 1 6.6572 -5.6540 2.6012 39 1 7.1208 -6.7286 4.7869 40 1 8.8449 -6.3170 4.6237 41 1 8.4851 -8.2201 5.7275 42 1 5.3864 0.1465 -0.3796 43 1 3.9683 0.8425 -1.2001 44 1 3.9660 0.6473 0.5690 45 1 3.2783 -2.6585 -2.0446 46 1 3.5805 -1.0214 -2.6736 47 1 4.9370 -2.0144 -2.0878 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783125834.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:47 Heat of formation + Delta-G solvation = -173.388982 kcal Electronic energy + Delta-G solvation = -28777.785420 eV Core-core repulsion = 24666.049514 eV Total energy + Delta-G solvation = -4111.735906 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.20556 -40.96189 -38.87204 -38.35549 -37.31269 -36.36190 -35.62906 -33.05619 -32.27870 -32.09974 -30.38666 -28.23556 -27.17767 -26.00797 -24.07344 -23.63457 -22.63315 -20.87993 -20.39792 -19.49185 -19.23827 -18.82890 -18.41548 -17.64930 -17.06311 -16.82624 -16.58701 -16.26065 -16.06407 -15.69823 -15.66423 -15.37642 -15.15594 -14.97731 -14.56863 -14.18600 -14.10542 -13.90244 -13.76021 -13.51080 -13.45770 -13.34268 -13.16410 -13.13748 -12.96559 -12.90351 -12.61104 -12.53598 -12.36864 -12.34887 -12.27984 -11.95299 -11.93322 -11.83123 -11.77100 -11.45759 -11.25422 -10.86945 -10.74975 -10.64155 -9.96302 -8.77829 -6.51803 -1.08068 1.00370 1.02354 1.37877 1.52179 1.61063 1.80420 2.45842 2.55450 2.94451 3.07004 3.14540 3.19140 3.42782 3.59973 3.73788 3.78194 3.80839 3.91045 4.01259 4.27550 4.30511 4.34808 4.46425 4.49019 4.57343 4.58604 4.65617 4.67742 4.83710 4.87050 4.94996 4.96384 4.98143 4.98518 5.08420 5.17414 5.20386 5.27344 5.37862 5.49510 5.65382 5.69186 5.77285 6.04417 6.41421 6.45555 6.65403 7.30779 8.62088 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016027 B = 0.002449 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.588747 B =11432.271253 C =12238.706234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.366 3.634 3 O -0.484 6.484 4 C -0.160 4.160 5 H 0.130 0.870 6 C -0.119 4.119 7 C -0.092 4.092 8 H 0.099 0.901 9 C -0.127 4.127 10 C 0.530 3.470 11 O -0.528 6.528 12 N -1.038 6.038 13 S 2.601 3.399 14 O -0.978 6.978 15 O -0.973 6.973 16 C -0.574 4.574 17 C 0.006 3.994 18 C -0.614 4.614 19 H 0.066 0.934 20 C -0.041 4.041 21 N -0.934 5.934 22 Si 1.123 2.877 23 H -0.284 1.284 24 H -0.267 1.267 25 H -0.262 1.262 26 C -0.058 4.058 27 C -0.119 4.119 28 C -0.138 4.138 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.127 0.873 35 H 0.142 0.858 36 H 0.451 0.549 37 H 0.150 0.850 38 H 0.135 0.865 39 H 0.001 0.999 40 H 0.011 0.989 41 H 0.255 0.745 42 H 0.066 0.934 43 H 0.049 0.951 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.057 0.943 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.350 21.021 -17.546 30.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.244 3.756 3 O -0.360 6.360 4 C -0.179 4.179 5 H 0.148 0.852 6 C -0.156 4.156 7 C -0.111 4.111 8 H 0.118 0.882 9 C -0.168 4.168 10 C 0.319 3.681 11 O -0.401 6.401 12 N -0.806 5.806 13 S 2.699 3.301 14 O -0.968 6.968 15 O -0.964 6.964 16 C -0.706 4.706 17 C -0.033 4.033 18 C -0.653 4.653 19 H 0.084 0.916 20 C -0.239 4.239 21 N -0.570 5.570 22 Si 0.942 3.058 23 H -0.209 1.209 24 H -0.192 1.192 25 H -0.186 1.186 26 C -0.058 4.058 27 C -0.176 4.176 28 C -0.195 4.195 29 H 0.116 0.884 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.145 0.855 35 H 0.160 0.840 36 H 0.292 0.708 37 H 0.168 0.832 38 H 0.153 0.847 39 H 0.019 0.981 40 H 0.029 0.971 41 H 0.064 0.936 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.076 0.924 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.156 19.514 -16.363 28.219 hybrid contribution -0.204 1.555 0.011 1.568 sum -12.359 21.069 -16.352 29.395 Atomic orbital electron populations 1.22333 0.92885 1.05955 1.04977 1.24803 0.92812 0.89555 0.68393 1.90412 1.72042 1.36244 1.37274 1.23441 0.96844 0.98104 0.99485 0.85161 1.22873 0.97009 1.01118 0.94647 1.22516 0.92276 1.00353 0.95934 0.88240 1.22017 1.00753 0.97141 0.96902 1.21641 0.77977 0.87735 0.80736 1.90897 1.48758 1.34418 1.66077 1.54868 1.31373 1.40613 1.53751 1.05304 0.73128 0.76516 0.75144 1.93550 1.49855 1.86440 1.66996 1.93564 1.46845 1.80160 1.75791 1.30145 1.12158 1.14978 1.13340 1.18988 0.95441 0.94153 0.94689 1.22291 1.52076 0.95387 0.95515 0.91556 1.27680 0.92780 1.06047 0.97389 1.70925 1.47541 1.31718 1.06854 0.82885 0.78065 0.71022 0.73797 1.20900 1.19168 1.18648 1.21841 0.93163 0.95912 0.94861 1.21731 1.00013 0.93339 1.02545 1.21778 1.02745 1.00714 0.94281 0.88371 0.88935 0.88359 0.90925 0.89993 0.85545 0.84042 0.70842 0.83189 0.84682 0.98095 0.97110 0.93586 0.91544 0.93220 0.92106 0.91886 0.92425 0.91454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.64 10.33 71.24 0.74 -0.90 16 2 C 0.37 4.95 6.67 29.10 0.19 5.14 16 3 O -0.48 -9.41 13.22 -1.45 -0.02 -9.43 16 4 C -0.16 -1.94 3.50 -10.95 -0.04 -1.98 16 5 H 0.13 1.16 7.95 -2.39 -0.02 1.14 16 6 C -0.12 -1.86 6.83 31.12 0.21 -1.64 16 7 C -0.09 -1.36 2.62 -10.27 -0.03 -1.38 16 8 H 0.10 1.72 7.69 -2.38 -0.02 1.70 16 9 C -0.13 -1.65 4.29 29.85 0.13 -1.52 16 10 C 0.53 12.07 7.57 87.66 0.66 12.73 16 11 O -0.53 -16.89 13.89 13.35 0.19 -16.71 16 12 N -1.04 -22.97 5.60 -173.53 -0.97 -23.94 16 13 S 2.60 91.96 5.11 -56.49 -0.29 91.68 16 14 O -0.98 -42.88 17.04 -120.72 -2.06 -44.94 16 15 O -0.97 -37.55 18.08 -127.65 -2.31 -39.86 16 16 C -0.57 -22.60 5.82 71.98 0.42 -22.18 16 17 C 0.01 0.33 4.29 29.85 0.13 0.45 16 18 C -0.61 -34.96 9.11 25.60 0.23 -34.73 16 19 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 20 C -0.04 -2.41 5.46 84.65 0.46 -1.95 16 21 N -0.93 -58.89 13.65 21.45 0.29 -58.59 16 22 Si 1.12 49.55 29.90 68.60 2.05 51.60 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 24 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 25 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 26 C -0.06 -0.70 1.23 -51.60 -0.06 -0.77 16 27 C -0.12 -1.57 6.22 71.98 0.45 -1.12 16 28 C -0.14 -1.45 9.20 71.98 0.66 -0.78 16 29 H 0.10 0.45 7.99 -2.39 -0.02 0.43 16 30 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.08 1.31 7.40 -2.38 -0.02 1.29 16 34 H 0.13 1.19 7.28 -2.39 -0.02 1.17 16 35 H 0.14 0.93 7.92 -2.39 -0.02 0.91 16 36 H 0.45 5.69 8.79 -96.75 -0.85 4.84 16 37 H 0.15 4.94 8.14 -2.39 -0.02 4.92 16 38 H 0.13 5.25 7.19 -2.39 -0.02 5.23 16 39 H 0.00 0.05 8.01 -2.39 -0.02 0.03 16 40 H 0.01 0.59 8.01 -2.38 -0.02 0.57 16 41 H 0.25 16.35 7.22 -92.71 -0.67 15.68 16 42 H 0.07 0.63 7.27 -2.39 -0.02 0.61 16 43 H 0.05 0.77 7.46 -2.39 -0.02 0.75 16 44 H 0.06 0.96 5.69 -2.39 -0.01 0.95 16 45 H 0.06 0.62 7.95 -2.39 -0.02 0.60 16 46 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 Total: -1.00 -85.69 391.35 1.27 -84.42 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.23 Total: 16.40 kcal Atomic # 6 Polarization: -54.79 SS G_CDS: 4.16 Total: -50.63 kcal Atomic # 7 Polarization: -81.86 SS G_CDS: -0.68 Total: -82.54 kcal Atomic # 8 Polarization: -106.73 SS G_CDS: -4.20 Total: -110.93 kcal Atomic # 14 Polarization: 49.55 SS G_CDS: 2.05 Total: 51.60 kcal Atomic # 16 Polarization: 91.96 SS G_CDS: -0.29 Total: 91.68 kcal Total: -85.69 1.27 -84.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783125834.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.969 kcal (2) G-P(sol) polarization free energy of solvation -85.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds