Wall clock time and date at job start Wed Apr 1 2020 02:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47312 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46948 * 119.99892 * 9 7 5 12 12 H 1.48500 * 109.46809 * 239.99811 * 9 7 5 13 13 O 1.45198 * 109.46884 * 294.99515 * 3 2 1 14 14 C 1.34715 * 117.00084 * 90.00227 * 13 3 2 15 15 O 1.21472 * 119.99640 * 0.02562 * 14 13 3 16 16 C 1.47724 * 120.00410 * 179.97438 * 14 13 3 17 17 C 1.39630 * 120.14867 * 359.72127 * 16 14 13 18 18 C 1.37945 * 119.84626 * 179.74738 * 17 16 14 19 19 C 1.38364 * 120.15045 * 0.53015 * 18 17 16 20 20 C 1.50696 * 119.84787 * 179.76146 * 19 18 17 21 21 N 1.46498 * 109.47564 * 269.98319 * 20 19 18 22 22 C 1.33872 * 122.76163 * 269.71187 * 21 20 19 23 23 O 1.21228 * 125.39744 * 359.97349 * 22 21 20 24 24 C 1.51316 * 109.20606 * 179.84265 * 22 21 20 25 25 C 1.54230 * 103.55597 * 0.38395 * 24 22 21 26 26 C 1.33874 * 122.76384 * 89.99799 * 21 20 19 27 27 O 1.21230 * 125.39474 * 359.97438 * 26 21 20 28 28 C 1.38367 * 120.30007 * 359.74861 * 19 18 17 29 29 C 1.37938 * 120.15490 * 359.96946 * 28 19 18 30 30 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 32 32 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 33 33 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 34 34 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 35 35 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 36 36 H 1.08004 * 120.07113 * 359.97438 * 17 16 14 37 37 H 1.08000 * 119.92101 * 180.27422 * 18 17 16 38 38 H 1.09003 * 109.47019 * 29.98852 * 20 19 18 39 39 H 1.08998 * 109.46931 * 149.97872 * 20 19 18 40 40 H 1.09006 * 110.79183 * 241.77346 * 24 22 21 41 41 H 1.09004 * 110.41883 * 118.81069 * 24 22 21 42 42 H 1.08996 * 110.60611 * 241.26316 * 25 24 22 43 43 H 1.08998 * 110.60546 * 118.29481 * 25 24 22 44 44 H 1.08005 * 119.91874 * 180.02562 * 28 19 18 45 45 H 1.08004 * 120.07625 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.5988 1.5443 0.1932 11 1 6.3999 1.6160 2.6092 12 1 6.4961 -0.5188 1.4628 13 8 1.6559 2.0916 -1.2407 14 6 0.4685 2.7276 -1.2562 15 8 -0.2268 2.7400 -0.2602 16 6 0.0124 3.4109 -2.4839 17 6 0.8122 3.4045 -3.6284 18 6 0.3778 4.0401 -4.7731 19 6 -0.8424 4.6923 -4.7854 20 6 -1.3078 5.3890 -6.0380 21 7 -0.8416 6.7778 -6.0263 22 6 -1.5589 7.7783 -5.5003 23 8 -2.6499 7.6645 -4.9843 24 6 -0.7905 9.0734 -5.6490 25 6 0.5045 8.6448 -6.3686 26 6 0.3342 7.1517 -6.5458 27 8 1.1357 6.4113 -7.0740 28 6 -1.6373 4.7075 -3.6530 29 6 -1.2179 4.0710 -2.5033 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.8293 -0.0608 2.9500 36 1 1.7670 2.8999 -3.6186 37 1 0.9935 4.0321 -5.6604 38 1 -0.9024 4.8769 -6.9106 39 1 -2.3968 5.3716 -6.0801 40 1 -0.5631 9.5027 -4.6732 41 1 -1.3522 9.7809 -6.2590 42 1 1.3761 8.8608 -5.7509 43 1 0.5871 9.1390 -7.3366 44 1 -2.5889 5.2182 -3.6695 45 1 -1.8392 4.0840 -1.6200 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787085301.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:51 Heat of formation + Delta-G solvation = -130.968304 kcal Electronic energy + Delta-G solvation = -29660.802929 eV Core-core repulsion = 25415.462570 eV Total energy + Delta-G solvation = -4245.340359 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.28262 -39.97869 -38.92780 -38.67578 -36.23331 -35.77785 -34.37145 -33.50769 -31.61169 -31.17511 -31.01242 -27.62901 -26.88905 -26.61289 -23.66647 -23.03689 -22.75040 -22.36218 -20.75508 -19.87802 -19.51399 -17.82190 -17.68040 -17.39444 -16.82962 -16.58980 -16.03248 -15.44028 -15.30516 -15.18267 -14.99696 -14.59782 -14.56904 -14.35210 -14.31170 -13.82633 -13.49477 -13.34964 -13.06761 -12.85487 -12.73535 -12.56212 -12.09907 -11.95189 -11.86138 -11.48853 -11.34640 -11.18536 -11.06660 -11.03574 -10.97099 -10.65236 -10.42822 -10.28520 -10.18800 -9.81931 -9.66908 -9.38584 -9.01543 -8.94608 -8.80911 -8.46588 -6.19618 -4.26611 0.68840 1.11506 1.35475 2.14326 2.30873 3.05566 3.22827 3.29544 3.34150 3.60739 3.61967 3.76058 3.94670 3.94975 4.30740 4.33458 4.47741 4.52204 4.87440 4.94234 4.97819 5.03905 5.09920 5.12149 5.12443 5.23532 5.36998 5.40428 5.60453 5.81069 6.00196 6.22604 6.25837 6.29874 6.30957 6.42785 6.47083 6.50782 6.81302 6.87143 6.90421 6.96122 7.16339 7.22932 7.35991 7.60512 7.72532 7.92184 8.14156 8.60281 8.86946 9.38567 10.87273 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015666 B = 0.002446 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.832282 B =11444.421387 C =12385.438738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.221 3.779 4 H 0.048 0.952 5 C -0.520 4.520 6 H 0.069 0.931 7 C 0.062 3.938 8 N -0.887 5.887 9 Si 0.911 3.089 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.281 1.281 13 O -0.349 6.349 14 C 0.493 3.507 15 O -0.511 6.511 16 C -0.100 4.100 17 C -0.066 4.066 18 C -0.110 4.110 19 C -0.101 4.101 20 C 0.140 3.860 21 N -0.570 5.570 22 C 0.526 3.474 23 O -0.478 6.478 24 C -0.158 4.158 25 C -0.158 4.158 26 C 0.526 3.474 27 O -0.476 6.476 28 C -0.110 4.110 29 C -0.065 4.065 30 H 0.033 0.967 31 H 0.053 0.947 32 H 0.031 0.969 33 H 0.042 0.958 34 H 0.109 0.891 35 H 0.266 0.734 36 H 0.144 0.856 37 H 0.133 0.867 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.132 0.868 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.108 16.071 -18.891 26.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.558 4.558 6 H 0.087 0.913 7 C -0.140 4.140 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.207 1.207 13 O -0.266 6.266 14 C 0.337 3.663 15 O -0.402 6.402 16 C -0.101 4.101 17 C -0.084 4.084 18 C -0.129 4.129 19 C -0.102 4.102 20 C 0.020 3.980 21 N -0.314 5.314 22 C 0.315 3.685 23 O -0.349 6.349 24 C -0.197 4.197 25 C -0.197 4.197 26 C 0.315 3.685 27 O -0.347 6.347 28 C -0.129 4.129 29 C -0.083 4.083 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.127 0.873 35 H 0.076 0.924 36 H 0.162 0.838 37 H 0.150 0.850 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.150 0.850 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -9.415 15.456 -18.410 25.816 hybrid contribution 0.864 -0.222 0.372 0.967 sum -8.551 15.234 -18.039 25.111 Atomic orbital electron populations 1.21865 0.98369 0.99057 1.00760 1.22021 0.92652 0.99276 1.03405 1.20724 0.95088 0.88790 0.78490 0.93441 1.21070 0.89584 1.38922 1.06267 0.91262 1.24890 0.99269 0.94759 0.95053 1.69905 1.35298 1.37858 1.09469 0.86229 0.83865 0.77895 0.78223 1.19467 1.20751 1.20697 1.86528 1.33481 1.62317 1.44225 1.20954 0.81132 0.76948 0.87223 1.90774 1.55564 1.58651 1.35183 1.19588 0.96134 1.01076 0.93305 1.21604 0.99609 0.95982 0.91228 1.21121 0.95455 0.97582 0.98719 1.20111 0.95662 0.99188 0.95285 1.20678 1.01349 0.78984 0.97018 1.46860 1.20488 1.10210 1.53803 1.20867 0.85066 0.86743 0.75805 1.90786 1.18727 1.85497 1.39927 1.22491 0.95827 0.96383 1.05028 1.22489 1.00153 0.92335 1.04754 1.20869 0.79978 0.91692 0.76001 1.90795 1.44081 1.59885 1.39937 1.21032 1.00186 0.99633 0.92045 1.21296 0.94483 0.94034 0.98504 0.94758 0.92797 0.94966 0.93930 0.87273 0.92424 0.83817 0.84959 0.87749 0.87794 0.85963 0.86149 0.85960 0.86106 0.84985 0.84354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.56 37.16 0.32 -2.89 16 2 C -0.14 -3.40 5.49 -26.73 -0.15 -3.55 16 3 C 0.22 5.93 2.25 -27.88 -0.06 5.86 16 4 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 5 C -0.52 -14.57 8.90 -34.44 -0.31 -14.88 16 6 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -25.09 11.30 55.43 0.63 -24.46 16 9 Si 0.91 21.05 29.54 -169.99 -5.02 16.03 16 10 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 O -0.35 -8.39 9.06 -40.53 -0.37 -8.76 16 14 C 0.49 10.71 6.35 34.61 0.22 10.93 16 15 O -0.51 -12.10 13.53 -19.24 -0.26 -12.36 16 16 C -0.10 -1.72 5.87 -104.98 -0.62 -2.34 16 17 C -0.07 -1.00 9.62 -39.17 -0.38 -1.38 16 18 C -0.11 -1.38 9.68 -39.64 -0.38 -1.76 16 19 C -0.10 -1.15 5.47 -104.53 -0.57 -1.72 16 20 C 0.14 1.22 5.67 -5.20 -0.03 1.19 16 21 N -0.57 -4.69 2.54 -116.63 -0.30 -4.99 16 22 C 0.53 4.13 8.08 -11.09 -0.09 4.04 16 23 O -0.48 -5.28 17.47 5.60 0.10 -5.18 16 24 C -0.16 -0.54 7.03 -26.94 -0.19 -0.73 16 25 C -0.16 -0.55 7.03 -26.94 -0.19 -0.74 16 26 C 0.53 4.19 8.07 -11.09 -0.09 4.10 16 27 O -0.48 -5.38 17.48 5.60 0.10 -5.28 16 28 C -0.11 -1.36 9.68 -39.64 -0.38 -1.74 16 29 C -0.07 -0.97 9.60 -39.17 -0.38 -1.34 16 30 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 1.26 7.79 -51.93 -0.40 0.85 16 32 H 0.03 0.70 6.06 -51.93 -0.31 0.38 16 33 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.11 2.96 5.95 -51.93 -0.31 2.65 16 35 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.14 2.20 7.61 -52.48 -0.40 1.80 16 37 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 38 H 0.10 0.82 7.77 -51.93 -0.40 0.41 16 39 H 0.10 0.80 7.76 -51.93 -0.40 0.40 16 40 H 0.12 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.12 0.16 8.14 -51.93 -0.42 -0.26 16 42 H 0.12 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.12 0.17 8.14 -51.93 -0.42 -0.25 16 44 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 45 H 0.14 2.05 7.65 -52.48 -0.40 1.65 16 LS Contribution 383.71 15.07 5.78 5.78 Total: -1.00 -34.07 383.71 -8.64 -42.71 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -5.93 Total: 1.84 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -3.37 Total: -5.33 kcal Atomic # 7 Polarization: -29.78 SS G_CDS: 0.33 Total: -29.45 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -0.43 Total: -31.58 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.07 -8.64 -42.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787085301.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.255 kcal (2) G-P(sol) polarization free energy of solvation -34.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds