Wall clock time and date at job start Wed Apr 1 2020 02:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47312 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46948 * 119.99892 * 9 7 5 12 12 H 1.48500 * 109.46809 * 239.99811 * 9 7 5 13 13 O 1.45198 * 109.46884 * 294.99515 * 3 2 1 14 14 C 1.34715 * 117.00084 * 90.00227 * 13 3 2 15 15 O 1.21472 * 119.99640 * 0.02562 * 14 13 3 16 16 C 1.47724 * 120.00410 * 179.97438 * 14 13 3 17 17 C 1.39630 * 120.14867 * 359.72127 * 16 14 13 18 18 C 1.37945 * 119.84626 * 179.74738 * 17 16 14 19 19 C 1.38364 * 120.15045 * 0.53015 * 18 17 16 20 20 C 1.50696 * 119.84787 * 179.76146 * 19 18 17 21 21 N 1.46498 * 109.47564 * 269.98319 * 20 19 18 22 22 C 1.33872 * 122.76163 * 269.71187 * 21 20 19 23 23 O 1.21228 * 125.39744 * 359.97349 * 22 21 20 24 24 C 1.51316 * 109.20606 * 179.84265 * 22 21 20 25 25 C 1.54230 * 103.55597 * 0.38395 * 24 22 21 26 26 C 1.33874 * 122.76384 * 89.99799 * 21 20 19 27 27 O 1.21230 * 125.39474 * 359.97438 * 26 21 20 28 28 C 1.38367 * 120.30007 * 359.74861 * 19 18 17 29 29 C 1.37938 * 120.15490 * 359.96946 * 28 19 18 30 30 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 32 32 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 33 33 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 34 34 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 35 35 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 36 36 H 1.08004 * 120.07113 * 359.97438 * 17 16 14 37 37 H 1.08000 * 119.92101 * 180.27422 * 18 17 16 38 38 H 1.09003 * 109.47019 * 29.98852 * 20 19 18 39 39 H 1.08998 * 109.46931 * 149.97872 * 20 19 18 40 40 H 1.09006 * 110.79183 * 241.77346 * 24 22 21 41 41 H 1.09004 * 110.41883 * 118.81069 * 24 22 21 42 42 H 1.08996 * 110.60611 * 241.26316 * 25 24 22 43 43 H 1.08998 * 110.60546 * 118.29481 * 25 24 22 44 44 H 1.08005 * 119.91874 * 180.02562 * 28 19 18 45 45 H 1.08004 * 120.07625 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.5988 1.5443 0.1932 11 1 6.3999 1.6160 2.6092 12 1 6.4961 -0.5188 1.4628 13 8 1.6559 2.0916 -1.2407 14 6 0.4685 2.7276 -1.2562 15 8 -0.2268 2.7400 -0.2602 16 6 0.0124 3.4109 -2.4839 17 6 0.8122 3.4045 -3.6284 18 6 0.3778 4.0401 -4.7731 19 6 -0.8424 4.6923 -4.7854 20 6 -1.3078 5.3890 -6.0380 21 7 -0.8416 6.7778 -6.0263 22 6 -1.5589 7.7783 -5.5003 23 8 -2.6499 7.6645 -4.9843 24 6 -0.7905 9.0734 -5.6490 25 6 0.5045 8.6448 -6.3686 26 6 0.3342 7.1517 -6.5458 27 8 1.1357 6.4113 -7.0740 28 6 -1.6373 4.7075 -3.6530 29 6 -1.2179 4.0710 -2.5033 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.8293 -0.0608 2.9500 36 1 1.7670 2.8999 -3.6186 37 1 0.9935 4.0321 -5.6604 38 1 -0.9024 4.8769 -6.9106 39 1 -2.3968 5.3716 -6.0801 40 1 -0.5631 9.5027 -4.6732 41 1 -1.3522 9.7809 -6.2590 42 1 1.3761 8.8608 -5.7509 43 1 0.5871 9.1390 -7.3366 44 1 -2.5889 5.2182 -3.6695 45 1 -1.8392 4.0840 -1.6200 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787085301.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:51 Heat of formation + Delta-G solvation = -150.333699 kcal Electronic energy + Delta-G solvation = -29661.642675 eV Core-core repulsion = 25415.462570 eV Total energy + Delta-G solvation = -4246.180105 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.87804 -41.58445 -40.00643 -39.59832 -37.66678 -36.89614 -35.57980 -35.02424 -33.42294 -32.29656 -32.15285 -29.44717 -28.06811 -27.06107 -25.45768 -24.25792 -23.94110 -23.09381 -22.33731 -21.38012 -20.47646 -19.32323 -18.58308 -18.36744 -18.21892 -17.68470 -17.38040 -17.13448 -16.63624 -16.36564 -16.05752 -15.81646 -15.45666 -15.23344 -14.91868 -14.85046 -14.80222 -14.59018 -14.45873 -14.22602 -13.73949 -13.48834 -13.38437 -13.36468 -13.31131 -13.14145 -13.04432 -12.85081 -12.58842 -12.17800 -12.13037 -12.08100 -11.81073 -11.69997 -11.54715 -11.39269 -11.04037 -10.90383 -10.86342 -10.56831 -10.13890 -10.10166 -8.30205 -6.47235 -0.52534 0.23316 0.54012 1.33722 1.40117 1.40967 1.54557 1.72481 1.76633 1.91899 2.39092 2.67075 2.99465 3.23711 3.31765 3.48727 3.63268 3.67696 3.81270 3.85210 4.06064 4.17862 4.21479 4.32229 4.34919 4.38205 4.42980 4.49756 4.53173 4.66152 4.78162 4.80484 4.90635 4.92802 4.96275 5.02316 5.09427 5.16642 5.22510 5.30015 5.34789 5.47979 5.62271 5.69681 5.83622 5.91024 6.05918 6.34131 6.56741 6.76542 6.89839 7.23828 8.77088 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015666 B = 0.002446 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.832282 B =11444.421387 C =12385.438738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.129 4.129 3 C 0.225 3.775 4 H 0.007 0.993 5 C -0.549 4.549 6 H 0.065 0.935 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.982 3.018 10 H -0.264 1.264 11 H -0.275 1.275 12 H -0.270 1.270 13 O -0.356 6.356 14 C 0.490 3.510 15 O -0.540 6.540 16 C -0.128 4.128 17 C -0.069 4.069 18 C -0.103 4.103 19 C -0.081 4.081 20 C 0.136 3.864 21 N -0.575 5.575 22 C 0.520 3.480 23 O -0.515 6.515 24 C -0.145 4.145 25 C -0.146 4.146 26 C 0.519 3.481 27 O -0.515 6.515 28 C -0.102 4.102 29 C -0.066 4.066 30 H 0.063 0.937 31 H 0.036 0.964 32 H 0.033 0.967 33 H 0.046 0.954 34 H 0.089 0.911 35 H 0.271 0.729 36 H 0.136 0.864 37 H 0.149 0.851 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.137 0.863 41 H 0.149 0.851 42 H 0.136 0.864 43 H 0.149 0.851 44 H 0.151 0.849 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.818 18.043 -21.178 29.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.167 4.167 3 C 0.172 3.828 4 H 0.025 0.975 5 C -0.587 4.587 6 H 0.084 0.916 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.805 3.195 10 H -0.188 1.188 11 H -0.201 1.201 12 H -0.196 1.196 13 O -0.273 6.273 14 C 0.336 3.664 15 O -0.432 6.432 16 C -0.129 4.129 17 C -0.087 4.087 18 C -0.122 4.122 19 C -0.082 4.082 20 C 0.016 3.984 21 N -0.318 5.318 22 C 0.311 3.689 23 O -0.389 6.389 24 C -0.184 4.184 25 C -0.185 4.185 26 C 0.311 3.689 27 O -0.389 6.389 28 C -0.120 4.120 29 C -0.084 4.084 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.107 0.893 35 H 0.080 0.920 36 H 0.154 0.846 37 H 0.167 0.833 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.155 0.845 41 H 0.167 0.833 42 H 0.154 0.846 43 H 0.167 0.833 44 H 0.169 0.831 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.139 17.451 -20.713 28.585 hybrid contribution 0.674 -0.755 0.995 1.419 sum -8.465 16.696 -19.718 27.189 Atomic orbital electron populations 1.21716 0.96394 1.00664 0.99960 1.21870 0.94375 0.97996 1.02461 1.20445 0.94737 0.89312 0.78333 0.97523 1.21331 0.90275 1.40077 1.06996 0.91635 1.25820 1.04362 0.93798 0.94275 1.70023 1.37425 1.37876 1.09868 0.85142 0.77520 0.78392 0.78400 1.18810 1.20062 1.19558 1.86513 1.35079 1.62920 1.42753 1.21750 0.79918 0.76207 0.88515 1.90743 1.56010 1.59809 1.36682 1.19390 0.97950 1.03473 0.92101 1.21579 0.99186 0.96434 0.91495 1.21245 0.96003 0.96796 0.98110 1.20440 0.94499 0.97318 0.95989 1.20726 1.02251 0.79761 0.95707 1.47019 1.20951 1.09915 1.53892 1.21665 0.84660 0.88007 0.74520 1.90772 1.20400 1.86160 1.41556 1.22603 0.95121 0.94331 1.06368 1.22601 1.00604 0.88718 1.06531 1.21679 0.79051 0.93484 0.74722 1.90780 1.45111 1.61298 1.41669 1.21187 1.00853 0.98770 0.91195 1.21329 0.93548 0.94053 0.99462 0.91802 0.94478 0.94835 0.93513 0.89294 0.91955 0.84595 0.83343 0.86636 0.86537 0.84523 0.83294 0.84604 0.83280 0.83112 0.84827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.97 8.56 71.98 0.62 -5.35 16 2 C -0.13 -6.71 5.49 30.60 0.17 -6.54 16 3 C 0.22 12.65 2.25 29.85 0.07 12.72 16 4 H 0.01 0.44 7.16 -2.39 -0.02 0.42 16 5 C -0.55 -31.80 8.90 25.60 0.23 -31.57 16 6 H 0.07 3.73 7.81 -2.91 -0.02 3.71 16 7 C 0.02 0.96 5.29 84.65 0.45 1.41 16 8 N -0.91 -52.93 11.30 21.45 0.24 -52.69 16 9 Si 0.98 43.37 29.54 68.60 2.03 45.40 16 10 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 11 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 12 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 13 O -0.36 -18.00 9.06 -56.25 -0.51 -18.51 16 14 C 0.49 22.38 6.35 70.33 0.45 22.82 16 15 O -0.54 -27.10 13.53 19.93 0.27 -26.83 16 16 C -0.13 -4.55 5.87 -20.10 -0.12 -4.67 16 17 C -0.07 -2.10 9.62 22.54 0.22 -1.89 16 18 C -0.10 -2.47 9.68 22.23 0.22 -2.25 16 19 C -0.08 -1.71 5.47 -19.80 -0.11 -1.82 16 20 C 0.14 2.08 5.67 85.63 0.49 2.56 16 21 N -0.58 -8.06 2.54 -760.74 -1.93 -9.99 16 22 C 0.52 6.78 8.08 87.99 0.71 7.49 16 23 O -0.52 -10.37 17.47 -2.87 -0.05 -10.42 16 24 C -0.15 -0.42 7.03 30.46 0.21 -0.20 16 25 C -0.15 -0.45 7.03 30.46 0.21 -0.23 16 26 C 0.52 6.95 8.07 87.99 0.71 7.66 16 27 O -0.51 -10.72 17.48 -2.87 -0.05 -10.77 16 28 C -0.10 -2.37 9.68 22.23 0.22 -2.16 16 29 C -0.07 -1.97 9.60 22.53 0.22 -1.76 16 30 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 31 H 0.04 1.79 7.79 -2.39 -0.02 1.77 16 32 H 0.03 1.49 6.06 -2.39 -0.01 1.48 16 33 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.09 5.00 5.95 -2.39 -0.01 4.98 16 35 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 36 H 0.14 4.31 7.61 -2.91 -0.02 4.29 16 37 H 0.15 3.12 8.06 -2.91 -0.02 3.09 16 38 H 0.12 1.54 7.77 -2.39 -0.02 1.52 16 39 H 0.12 1.52 7.76 -2.39 -0.02 1.50 16 40 H 0.14 0.11 8.14 -2.38 -0.02 0.09 16 41 H 0.15 -0.34 8.14 -2.38 -0.02 -0.35 16 42 H 0.14 0.16 8.14 -2.39 -0.02 0.14 16 43 H 0.15 -0.30 8.14 -2.39 -0.02 -0.32 16 44 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 45 H 0.13 4.09 7.65 -2.91 -0.02 4.06 16 Total: -1.00 -77.95 383.71 5.96 -71.99 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 1.02 Total: 15.59 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 4.95 Total: -3.78 kcal Atomic # 7 Polarization: -60.98 SS G_CDS: -1.69 Total: -62.67 kcal Atomic # 8 Polarization: -66.20 SS G_CDS: -0.34 Total: -66.54 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -77.95 5.96 -71.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787085301.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.343 kcal (2) G-P(sol) polarization free energy of solvation -77.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds