Wall clock time and date at job start Wed Apr 1 2020 02:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47306 * 2 1 4 4 H 1.09002 * 109.47044 * 305.23733 * 3 2 1 5 5 C 1.50694 * 109.47405 * 185.23782 * 3 2 1 6 6 H 1.08002 * 119.99832 * 244.83317 * 5 3 2 7 7 C 1.37875 * 120.00217 * 64.82946 * 5 3 2 8 8 N 1.31515 * 120.00303 * 187.25038 * 7 5 3 9 9 Si 1.86797 * 119.99840 * 7.25220 * 7 5 3 10 10 H 1.48506 * 109.47064 * 269.99920 * 9 7 5 11 11 H 1.48496 * 109.47266 * 29.99959 * 9 7 5 12 12 H 1.48496 * 109.47290 * 149.99961 * 9 7 5 13 13 O 1.45204 * 109.47282 * 65.23579 * 3 2 1 14 14 C 1.34708 * 116.99832 * 270.00461 * 13 3 2 15 15 O 1.21475 * 120.00484 * 359.97438 * 14 13 3 16 16 C 1.47733 * 119.99892 * 179.97438 * 14 13 3 17 17 C 1.39629 * 120.14528 * 359.72104 * 16 14 13 18 18 C 1.37954 * 119.84186 * 179.71850 * 17 16 14 19 19 C 1.38363 * 120.15172 * 0.56364 * 18 17 16 20 20 C 1.50700 * 119.85194 * 179.73811 * 19 18 17 21 21 N 1.46491 * 109.47321 * 269.97781 * 20 19 18 22 22 C 1.33882 * 122.75902 * 269.70965 * 21 20 19 23 23 O 1.21220 * 125.40167 * 359.97263 * 22 21 20 24 24 C 1.51321 * 109.20130 * 179.84202 * 22 21 20 25 25 C 1.54224 * 103.55866 * 0.38229 * 24 22 21 26 26 C 1.33873 * 122.76436 * 89.99306 * 21 20 19 27 27 O 1.21224 * 125.39914 * 359.97438 * 26 21 20 28 28 C 1.38373 * 120.30476 * 359.71392 * 19 18 17 29 29 C 1.37952 * 120.14844 * 0.02562 * 28 19 18 30 30 H 1.08999 * 109.47166 * 300.00143 * 1 2 3 31 31 H 1.09003 * 109.46694 * 60.00305 * 1 2 3 32 32 H 1.08995 * 109.47090 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47166 * 239.99857 * 2 1 3 34 34 H 1.09006 * 109.47179 * 119.99712 * 2 1 3 35 35 H 0.96998 * 119.99884 * 354.94540 * 8 7 5 36 36 H 1.07995 * 120.08273 * 359.97438 * 17 16 14 37 37 H 1.08001 * 119.92210 * 180.25092 * 18 17 16 38 38 H 1.08999 * 109.46801 * 29.97513 * 20 19 18 39 39 H 1.08997 * 109.47379 * 149.97054 * 20 19 18 40 40 H 1.09001 * 110.79537 * 241.77338 * 24 22 21 41 41 H 1.08997 * 110.41559 * 118.81412 * 24 22 21 42 42 H 1.08994 * 110.60746 * 241.26395 * 25 24 22 43 43 H 1.09003 * 110.60614 * 118.29570 * 25 24 22 44 44 H 1.08001 * 119.92707 * 180.02562 * 28 19 18 45 45 H 1.07996 * 120.07571 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6022 1.9827 -0.8394 5 6 3.5414 1.4445 -0.1297 6 1 4.1528 1.8170 0.6789 7 6 4.1346 0.9707 -1.2806 8 7 5.4417 0.8387 -1.3404 9 14 3.0816 0.5163 -2.7551 10 1 2.6924 -0.9140 -2.6634 11 1 1.8608 1.3615 -2.7709 12 1 3.8546 0.7399 -4.0031 13 8 1.6608 2.0900 1.2431 14 6 0.4734 2.7260 1.2639 15 8 -0.2258 2.7397 0.2706 16 6 0.0216 3.4068 2.4947 17 6 0.8202 3.3880 3.6399 18 6 0.3949 4.0308 4.7840 19 6 -0.8253 4.6830 4.8019 20 6 -1.2860 5.3780 6.0573 21 7 -2.0515 4.4399 6.8819 22 6 -3.3778 4.2944 6.7720 23 8 -4.0895 4.9017 6.0012 24 6 -3.8474 3.2493 7.7605 25 6 -2.5503 2.8186 8.4748 26 6 -1.4832 3.6616 7.8111 27 8 -0.3010 3.6357 8.0781 28 6 -1.6243 4.7006 3.6723 29 6 -1.2087 4.0665 2.5198 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8901 35 1 5.9941 1.1428 -0.6033 36 1 1.7705 2.8751 3.6288 37 1 1.0134 4.0205 5.6693 38 1 -0.4192 5.7297 6.6167 39 1 -1.9162 6.2268 5.7922 40 1 -4.2997 2.4030 7.2433 41 1 -4.5497 3.6859 8.4706 42 1 -2.3571 1.7582 8.3130 43 1 -2.6072 3.0410 9.5404 44 1 -2.5753 5.2119 3.6930 45 1 -1.8334 4.0806 1.6390 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787085302.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:53 Heat of formation + Delta-G solvation = -151.790170 kcal Electronic energy + Delta-G solvation = -29782.631480 eV Core-core repulsion = 25536.388217 eV Total energy + Delta-G solvation = -4246.243263 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.89722 -41.70238 -40.07990 -39.61768 -37.80024 -36.91739 -35.65055 -35.05641 -33.94901 -32.34601 -32.19205 -29.63937 -28.11793 -27.07494 -24.97092 -24.16947 -23.98156 -23.11961 -22.51812 -21.46189 -20.49754 -20.06435 -19.01835 -18.41173 -18.26006 -17.86298 -17.42271 -17.32523 -16.43275 -16.31297 -15.92613 -15.79900 -15.45088 -15.25204 -15.10259 -14.87185 -14.78377 -14.70099 -14.62212 -14.44119 -14.25120 -13.84542 -13.58886 -13.38162 -13.35754 -13.18954 -13.02560 -12.78408 -12.47119 -12.19399 -12.09212 -11.91302 -11.75385 -11.71812 -11.57141 -11.36078 -11.05649 -10.92557 -10.87475 -10.77305 -10.17830 -10.14666 -8.96893 -6.62490 -0.57785 0.19305 0.52500 1.27815 1.33412 1.44392 1.61571 1.69100 1.73491 1.80683 2.30664 2.62236 2.88064 3.22095 3.30215 3.43420 3.59788 3.65725 3.70965 3.81085 3.99835 4.09581 4.14399 4.16332 4.19942 4.25931 4.35591 4.39731 4.49946 4.52970 4.62881 4.79444 4.86547 4.91768 4.92925 4.94522 4.95295 5.00708 5.06962 5.19030 5.26808 5.31890 5.37434 5.65458 5.73476 5.81938 5.88014 6.32110 6.32705 6.74871 6.78362 7.16352 8.45529 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.020146 B = 0.002396 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.547385 B =11683.751854 C =12018.262515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.143 4.143 3 C 0.197 3.803 4 H 0.033 0.967 5 C -0.610 4.610 6 H 0.031 0.969 7 C -0.006 4.006 8 N -0.924 5.924 9 Si 1.077 2.923 10 H -0.245 1.245 11 H -0.262 1.262 12 H -0.277 1.277 13 O -0.353 6.353 14 C 0.491 3.509 15 O -0.532 6.532 16 C -0.129 4.129 17 C -0.071 4.071 18 C -0.105 4.105 19 C -0.080 4.080 20 C 0.136 3.864 21 N -0.575 5.575 22 C 0.520 3.480 23 O -0.514 6.514 24 C -0.145 4.145 25 C -0.145 4.145 26 C 0.519 3.481 27 O -0.516 6.516 28 C -0.101 4.101 29 C -0.061 4.061 30 H 0.038 0.962 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.258 0.742 36 H 0.130 0.870 37 H 0.146 0.854 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.138 0.862 41 H 0.149 0.851 42 H 0.137 0.863 43 H 0.149 0.851 44 H 0.153 0.847 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.782 5.585 23.011 32.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.181 4.181 3 C 0.143 3.857 4 H 0.051 0.949 5 C -0.648 4.648 6 H 0.049 0.951 7 C -0.206 4.206 8 N -0.558 5.558 9 Si 0.898 3.102 10 H -0.170 1.170 11 H -0.187 1.187 12 H -0.202 1.202 13 O -0.269 6.269 14 C 0.338 3.662 15 O -0.424 6.424 16 C -0.130 4.130 17 C -0.090 4.090 18 C -0.123 4.123 19 C -0.081 4.081 20 C 0.015 3.985 21 N -0.318 5.318 22 C 0.312 3.688 23 O -0.388 6.388 24 C -0.184 4.184 25 C -0.184 4.184 26 C 0.310 3.690 27 O -0.390 6.390 28 C -0.119 4.119 29 C -0.080 4.080 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.148 0.852 37 H 0.163 0.837 38 H 0.131 0.869 39 H 0.136 0.864 40 H 0.156 0.844 41 H 0.167 0.833 42 H 0.155 0.845 43 H 0.167 0.833 44 H 0.171 0.829 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -22.598 5.255 20.935 31.250 hybrid contribution 1.104 0.879 1.028 1.746 sum -21.494 6.135 21.963 31.337 Atomic orbital electron populations 1.21823 0.94647 1.02105 1.01235 1.22220 0.96242 0.97088 1.02506 1.20902 0.94308 0.90002 0.80523 0.94913 1.22135 0.90656 1.47927 1.04069 0.95058 1.27064 0.97808 0.93155 1.02543 1.70927 1.05185 1.43973 1.35740 0.83630 0.74425 0.79182 0.73004 1.17007 1.18734 1.20230 1.86557 1.35461 1.63046 1.41797 1.21733 0.79696 0.76122 0.88669 1.90734 1.55568 1.59581 1.36520 1.19364 0.98076 1.03718 0.91886 1.21546 0.99064 0.96572 0.91772 1.21225 0.96508 0.96728 0.97864 1.20443 0.94199 0.97620 0.95833 1.20720 0.98251 0.91244 0.88306 1.47024 1.10794 1.38671 1.35292 1.21670 0.80608 0.83104 0.83428 1.90770 1.59029 1.49446 1.39546 1.22602 0.99299 0.98542 0.97908 1.22604 0.90064 1.02224 1.03541 1.21709 0.89763 0.79330 0.78191 1.90783 1.17715 1.66108 1.64407 1.21221 1.00443 0.99057 0.91219 1.21356 0.93304 0.93774 0.99520 0.94279 0.93002 0.90397 0.91130 0.91656 0.93241 0.85173 0.83665 0.86879 0.86447 0.84360 0.83320 0.84519 0.83349 0.82891 0.84238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.38 8.57 71.98 0.62 -4.77 16 2 C -0.14 -6.44 5.25 30.59 0.16 -6.28 16 3 C 0.20 10.25 1.83 29.85 0.05 10.31 16 4 H 0.03 1.80 5.64 -2.39 -0.01 1.78 16 5 C -0.61 -36.54 9.25 25.60 0.24 -36.30 16 6 H 0.03 2.05 8.05 -2.91 -0.02 2.02 16 7 C -0.01 -0.36 5.42 84.65 0.46 0.10 16 8 N -0.92 -57.88 13.70 21.45 0.29 -57.59 16 9 Si 1.08 50.89 25.40 68.60 1.74 52.63 16 10 H -0.25 -10.34 6.74 99.48 0.67 -9.67 16 11 H -0.26 -11.89 6.37 99.48 0.63 -11.26 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 O -0.35 -17.16 9.06 -56.18 -0.51 -17.67 16 14 C 0.49 21.02 6.36 70.33 0.45 21.46 16 15 O -0.53 -24.12 13.53 19.92 0.27 -23.85 16 16 C -0.13 -4.38 5.87 -20.10 -0.12 -4.49 16 17 C -0.07 -2.16 9.62 22.54 0.22 -1.95 16 18 C -0.10 -2.50 9.68 22.23 0.22 -2.29 16 19 C -0.08 -1.63 5.47 -19.80 -0.11 -1.74 16 20 C 0.14 2.02 5.67 85.63 0.49 2.50 16 21 N -0.58 -7.67 2.54 -760.75 -1.93 -9.60 16 22 C 0.52 6.26 8.08 87.99 0.71 6.97 16 23 O -0.51 -9.77 17.47 -2.84 -0.05 -9.82 16 24 C -0.14 -0.26 7.03 30.46 0.21 -0.05 16 25 C -0.15 -0.33 7.03 30.46 0.21 -0.12 16 26 C 0.52 6.67 8.07 87.99 0.71 7.38 16 27 O -0.52 -10.68 17.48 -2.86 -0.05 -10.73 16 28 C -0.10 -2.21 9.68 22.23 0.22 -2.00 16 29 C -0.06 -1.71 9.60 22.54 0.22 -1.50 16 30 H 0.04 1.50 6.05 -2.39 -0.01 1.49 16 31 H 0.05 2.02 7.80 -2.39 -0.02 2.01 16 32 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.07 3.16 4.44 -2.39 -0.01 3.15 16 34 H 0.06 2.90 8.14 -2.38 -0.02 2.88 16 35 H 0.26 16.36 8.72 -92.71 -0.81 15.55 16 36 H 0.13 4.23 7.61 -2.91 -0.02 4.21 16 37 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 38 H 0.11 1.53 7.77 -2.39 -0.02 1.51 16 39 H 0.12 1.48 7.76 -2.39 -0.02 1.46 16 40 H 0.14 -0.08 8.14 -2.39 -0.02 -0.10 16 41 H 0.15 -0.47 8.14 -2.39 -0.02 -0.49 16 42 H 0.14 0.02 8.14 -2.39 -0.02 0.01 16 43 H 0.15 -0.38 8.14 -2.39 -0.02 -0.40 16 44 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 45 H 0.14 3.84 7.65 -2.91 -0.02 3.81 16 Total: -1.00 -80.74 378.32 5.59 -75.15 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 0.88 Total: 14.22 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: 4.95 Total: -12.75 kcal Atomic # 7 Polarization: -65.56 SS G_CDS: -1.64 Total: -67.19 kcal Atomic # 8 Polarization: -61.73 SS G_CDS: -0.34 Total: -62.07 kcal Atomic # 14 Polarization: 50.89 SS G_CDS: 1.74 Total: 52.63 kcal Total: -80.74 5.59 -75.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787085302.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.637 kcal (2) G-P(sol) polarization free energy of solvation -80.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds