Wall clock time and date at job start Wed Apr 1 2020 03:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46810 * 2 1 4 4 O 1.45208 * 109.46945 * 119.99286 * 2 1 3 5 5 C 1.34225 * 116.99956 * 270.00524 * 4 2 1 6 6 O 1.20820 * 120.00334 * 359.97438 * 5 4 2 7 7 C 1.50704 * 119.99511 * 180.02562 * 5 4 2 8 8 H 1.08997 * 110.07391 * 58.46613 * 7 5 4 9 9 C 1.53484 * 110.08533 * 296.87469 * 7 5 4 10 10 C 1.50954 * 105.33534 * 240.79243 * 9 7 5 11 11 O 1.21260 * 125.94600 * 179.97438 * 10 9 7 12 12 C 1.47221 * 108.10298 * 359.97438 * 10 9 7 13 13 C 1.40385 * 130.00824 * 180.02562 * 12 10 9 14 14 C 1.37693 * 120.06240 * 179.97438 * 13 12 10 15 15 C 1.38419 * 120.16457 * 359.97438 * 14 13 12 16 16 C 1.38276 * 120.19600 * 0.05222 * 15 14 13 17 17 C 1.38209 * 120.33355 * 359.92450 * 16 15 14 18 18 C 1.50700 * 109.47696 * 239.99575 * 2 1 3 19 19 O 1.21283 * 119.99939 * 245.00077 * 18 2 1 20 20 N 1.34772 * 119.99552 * 64.99972 * 18 2 1 21 21 C 1.46497 * 120.00280 * 0.02562 * 20 18 2 22 22 C 1.46507 * 119.99586 * 180.02562 * 20 18 2 23 23 C 1.50697 * 109.47006 * 90.00023 * 22 20 18 24 24 H 1.07991 * 120.00449 * 359.72165 * 23 22 20 25 25 C 1.37885 * 119.99686 * 179.97438 * 23 22 20 26 26 N 1.31514 * 120.00035 * 179.72339 * 25 23 22 27 27 Si 1.86803 * 119.99853 * 359.72191 * 25 23 22 28 28 H 1.48500 * 109.46986 * 90.00256 * 27 25 23 29 29 H 1.48496 * 109.47029 * 210.00273 * 27 25 23 30 30 H 1.48499 * 109.47352 * 330.00102 * 27 25 23 31 31 H 1.09003 * 109.46810 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47478 * 300.00589 * 1 2 3 33 33 H 1.09003 * 109.47040 * 60.00372 * 1 2 3 34 34 H 1.09001 * 110.27390 * 359.75998 * 9 7 5 35 35 H 1.09003 * 110.27132 * 121.82646 * 9 7 5 36 36 H 1.08000 * 119.96910 * 359.97438 * 13 12 10 37 37 H 1.07994 * 119.91642 * 180.02562 * 14 13 12 38 38 H 1.08001 * 119.90480 * 180.02562 * 15 14 13 39 39 H 1.08001 * 119.83409 * 179.97438 * 16 15 14 40 40 H 1.09005 * 109.47477 * 269.99926 * 21 20 18 41 41 H 1.08993 * 109.47146 * 30.00231 * 21 20 18 42 42 H 1.09008 * 109.47223 * 150.00153 * 21 20 18 43 43 H 1.08998 * 109.47049 * 329.99451 * 22 20 18 44 44 H 1.09001 * 109.46896 * 209.99722 * 22 20 18 45 45 H 0.97000 * 119.99706 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6844 1.1857 5 6 2.2170 0.0642 2.2812 6 8 1.9980 1.2520 2.2503 7 6 2.7191 -0.5768 3.5493 8 1 3.6759 -1.0664 3.3676 9 6 1.6942 -1.5954 4.0667 10 6 1.2915 -1.0974 5.4337 11 8 0.4934 -1.6267 6.1774 12 6 2.0366 0.1427 5.7065 13 6 2.0140 0.9797 6.8333 14 6 2.8068 2.1049 6.8727 15 6 3.6286 2.4145 5.8028 16 6 3.6573 1.5964 4.6884 17 6 2.8679 0.4633 4.6338 18 6 2.0325 -0.7105 -1.2304 19 8 2.6531 -1.7467 -1.1212 20 7 1.7921 -0.1943 -2.4519 21 6 1.0428 1.0577 -2.5836 22 6 2.2801 -0.8853 -3.6481 23 6 1.2331 -1.8564 -4.1294 24 1 0.2996 -1.9529 -3.5951 25 6 1.4691 -2.6256 -5.2492 26 7 0.5577 -3.4770 -5.6662 27 14 3.0836 -2.4582 -6.1739 28 1 4.0754 -3.4115 -5.6148 29 1 2.8640 -2.7587 -7.6115 30 1 3.5947 -1.0713 -6.0306 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 0.8277 -1.6280 3.4063 35 1 2.1489 -2.5831 4.1433 36 1 1.3743 0.7410 7.6700 37 1 2.7878 2.7469 7.7409 38 1 4.2490 3.2978 5.8383 39 1 4.3004 1.8438 3.8567 40 1 -0.0214 0.8372 -2.6678 41 1 1.2167 1.6792 -1.7053 42 1 1.3756 1.5882 -3.4758 43 1 3.1947 -1.4269 -3.4070 44 1 2.4858 -0.1552 -4.4309 45 1 0.7236 -4.0178 -6.4542 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789301485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:57 Heat of formation + Delta-G solvation = -111.881072 kcal Electronic energy + Delta-G solvation = -29841.485759 eV Core-core repulsion = 25596.973085 eV Total energy + Delta-G solvation = -4244.512674 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.58121 -40.36161 -39.08375 -38.46832 -36.62383 -35.43890 -35.10188 -32.85546 -31.76896 -31.46849 -29.79417 -28.38984 -27.34148 -26.34471 -24.55777 -23.41477 -23.06392 -21.90506 -20.63111 -20.38902 -18.94157 -18.21484 -17.26746 -17.01498 -16.88968 -16.42515 -16.27775 -15.94523 -15.75348 -15.51194 -14.90129 -14.76783 -14.39579 -14.35397 -14.15469 -13.82083 -13.42481 -13.35648 -13.15850 -13.09834 -12.67607 -12.45068 -12.36386 -12.26339 -12.20795 -12.09548 -11.95494 -11.57193 -11.53533 -11.47367 -10.96792 -10.83285 -10.68508 -10.56287 -10.19223 -10.08775 -9.60386 -9.38526 -9.30254 -9.09144 -8.63530 -7.86003 -6.13179 -4.12667 0.19457 0.86032 1.91343 2.00376 2.26743 3.09232 3.25612 3.31207 3.33028 3.35218 3.42342 3.71365 3.81002 4.08081 4.35110 4.45227 4.47675 4.59219 4.60584 4.68157 4.77214 4.88715 4.91882 4.96832 5.06460 5.19379 5.20887 5.31681 5.36893 5.40753 5.53614 5.59897 5.62265 5.75598 5.86580 5.92467 5.96319 5.99424 6.14747 6.24676 6.41217 6.58332 6.83295 7.06948 7.16709 7.50015 7.54178 8.03335 8.39872 8.74860 8.89930 9.46106 11.00034 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.021486 B = 0.002325 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.877559 B =12040.977619 C =12471.582335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.072 3.928 3 H 0.106 0.894 4 O -0.320 6.320 5 C 0.468 3.532 6 O -0.497 6.497 7 C -0.042 4.042 8 H 0.138 0.862 9 C -0.162 4.162 10 C 0.410 3.590 11 O -0.436 6.436 12 C -0.182 4.182 13 C -0.053 4.053 14 C -0.129 4.129 15 C -0.083 4.083 16 C -0.093 4.093 17 C -0.036 4.036 18 C 0.511 3.489 19 O -0.518 6.518 20 N -0.591 5.591 21 C 0.077 3.923 22 C 0.217 3.783 23 C -0.531 4.531 24 H 0.075 0.925 25 C 0.073 3.927 26 N -0.895 5.895 27 Si 0.876 3.124 28 H -0.273 1.273 29 H -0.284 1.284 30 H -0.266 1.266 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.120 0.880 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.130 0.870 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.073 0.927 43 H 0.038 0.962 44 H 0.034 0.966 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.110 13.488 22.607 26.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.014 3.986 3 H 0.124 0.876 4 O -0.235 6.235 5 C 0.310 3.690 6 O -0.384 6.384 7 C -0.061 4.061 8 H 0.156 0.844 9 C -0.200 4.200 10 C 0.287 3.713 11 O -0.310 6.310 12 C -0.183 4.183 13 C -0.071 4.071 14 C -0.147 4.147 15 C -0.101 4.101 16 C -0.111 4.111 17 C -0.036 4.036 18 C 0.295 3.705 19 O -0.393 6.393 20 N -0.324 5.324 21 C -0.066 4.066 22 C 0.097 3.903 23 C -0.570 4.570 24 H 0.093 0.907 25 C -0.130 4.130 26 N -0.533 5.533 27 Si 0.703 3.297 28 H -0.198 1.198 29 H -0.210 1.210 30 H -0.191 1.191 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.138 0.862 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.148 0.852 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.056 0.944 44 H 0.052 0.948 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.902 12.858 22.828 26.655 hybrid contribution 0.704 0.245 -0.839 1.122 sum 5.607 13.103 21.989 26.204 Atomic orbital electron populations 1.22293 0.91910 1.04631 1.04108 1.22648 0.96170 0.97238 0.82516 0.87642 1.86619 1.76274 1.41275 1.19357 1.23213 0.74770 0.85860 0.85150 1.90675 1.47388 1.16260 1.84089 1.20169 1.02370 0.95083 0.88490 0.84396 1.22305 1.00695 1.00479 0.96485 1.22391 0.78425 0.83086 0.87391 1.90569 1.28356 1.59901 1.52205 1.21050 1.01383 0.99170 0.96695 1.21137 0.96862 0.92760 0.96390 1.21135 0.96970 0.97273 0.99283 1.21352 0.97396 0.98680 0.92664 1.20617 0.98884 0.93102 0.98481 1.19975 0.95509 0.94697 0.93459 1.19747 0.81277 0.85673 0.83765 1.90711 1.40177 1.22555 1.85842 1.47733 1.54513 1.23919 1.06261 1.21871 0.97041 0.85760 1.01950 1.19751 0.96350 0.92919 0.81285 1.21291 1.03045 1.20986 1.11629 0.90660 1.24858 0.96631 0.94571 0.96919 1.69892 1.34241 1.24290 1.24920 0.86851 0.84387 0.79165 0.79280 1.19848 1.21006 1.19079 0.90498 0.91322 0.89014 0.86221 0.85314 0.85115 0.84997 0.84921 0.85211 0.92127 0.92237 0.90850 0.94407 0.94827 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 9.27 37.16 0.34 -1.95 16 2 C 0.07 1.11 2.16 -27.88 -0.06 1.05 16 3 H 0.11 1.45 6.14 -51.93 -0.32 1.13 16 4 O -0.32 -4.80 9.40 -45.88 -0.43 -5.23 16 5 C 0.47 5.88 6.97 36.01 0.25 6.13 16 6 O -0.50 -6.95 14.88 -18.75 -0.28 -7.23 16 7 C -0.04 -0.40 3.44 -92.53 -0.32 -0.71 16 8 H 0.14 0.98 8.14 -51.93 -0.42 0.56 16 9 C -0.16 -1.44 6.49 -27.51 -0.18 -1.62 16 10 C 0.41 4.36 7.77 -30.54 -0.24 4.13 16 11 O -0.44 -5.81 18.02 5.57 0.10 -5.71 16 12 C -0.18 -1.80 6.11 -104.99 -0.64 -2.44 16 13 C -0.05 -0.45 10.11 -38.97 -0.39 -0.84 16 14 C -0.13 -0.87 10.02 -39.71 -0.40 -1.27 16 15 C -0.08 -0.57 10.04 -39.50 -0.40 -0.97 16 16 C -0.09 -0.79 9.47 -39.58 -0.37 -1.16 16 17 C -0.04 -0.34 5.02 -104.04 -0.52 -0.86 16 18 C 0.51 10.25 7.10 -10.99 -0.08 10.17 16 19 O -0.52 -12.62 16.09 -14.05 -0.23 -12.84 16 20 N -0.59 -11.71 2.86 -182.95 -0.52 -12.23 16 21 C 0.08 1.11 8.96 59.85 0.54 1.65 16 22 C 0.22 5.14 4.27 -5.19 -0.02 5.12 16 23 C -0.53 -14.90 9.94 -34.44 -0.34 -15.24 16 24 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 25 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 26 N -0.90 -27.19 13.96 55.43 0.77 -26.42 16 27 Si 0.88 21.11 27.47 -169.99 -4.67 16.44 16 28 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 29 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 30 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 1.12 5.12 -51.93 -0.27 0.86 16 34 H 0.12 1.11 7.67 -51.93 -0.40 0.71 16 35 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 37 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 38 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 39 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.06 0.85 7.02 -51.93 -0.36 0.48 16 41 H 0.06 0.67 6.08 -51.93 -0.32 0.35 16 42 H 0.07 0.97 7.89 -51.92 -0.41 0.56 16 43 H 0.04 0.96 6.86 -51.93 -0.36 0.60 16 44 H 0.03 0.75 6.94 -51.93 -0.36 0.39 16 45 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 380.95 15.07 5.74 5.74 Total: -1.00 -36.68 380.95 -8.21 -44.88 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -5.76 Total: -0.55 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -2.93 Total: 3.16 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.25 Total: -38.65 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -0.84 Total: -31.02 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.68 -8.21 -44.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789301485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.000 kcal (2) G-P(sol) polarization free energy of solvation -36.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds