Wall clock time and date at job start Wed Apr 1 2020 03:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46810 * 2 1 4 4 O 1.45208 * 109.46945 * 119.99286 * 2 1 3 5 5 C 1.34225 * 116.99956 * 270.00524 * 4 2 1 6 6 O 1.20820 * 120.00334 * 359.97438 * 5 4 2 7 7 C 1.50704 * 119.99511 * 180.02562 * 5 4 2 8 8 H 1.08997 * 110.07391 * 58.46613 * 7 5 4 9 9 C 1.53484 * 110.08533 * 296.87469 * 7 5 4 10 10 C 1.50954 * 105.33534 * 240.79243 * 9 7 5 11 11 O 1.21260 * 125.94600 * 179.97438 * 10 9 7 12 12 C 1.47221 * 108.10298 * 359.97438 * 10 9 7 13 13 C 1.40385 * 130.00824 * 180.02562 * 12 10 9 14 14 C 1.37693 * 120.06240 * 179.97438 * 13 12 10 15 15 C 1.38419 * 120.16457 * 359.97438 * 14 13 12 16 16 C 1.38276 * 120.19600 * 0.05222 * 15 14 13 17 17 C 1.38209 * 120.33355 * 359.92450 * 16 15 14 18 18 C 1.50700 * 109.47696 * 239.99575 * 2 1 3 19 19 O 1.21283 * 119.99939 * 245.00077 * 18 2 1 20 20 N 1.34772 * 119.99552 * 64.99972 * 18 2 1 21 21 C 1.46497 * 120.00280 * 0.02562 * 20 18 2 22 22 C 1.46507 * 119.99586 * 180.02562 * 20 18 2 23 23 C 1.50697 * 109.47006 * 90.00023 * 22 20 18 24 24 H 1.07991 * 120.00449 * 359.72165 * 23 22 20 25 25 C 1.37885 * 119.99686 * 179.97438 * 23 22 20 26 26 N 1.31514 * 120.00035 * 179.72339 * 25 23 22 27 27 Si 1.86803 * 119.99853 * 359.72191 * 25 23 22 28 28 H 1.48500 * 109.46986 * 90.00256 * 27 25 23 29 29 H 1.48496 * 109.47029 * 210.00273 * 27 25 23 30 30 H 1.48499 * 109.47352 * 330.00102 * 27 25 23 31 31 H 1.09003 * 109.46810 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47478 * 300.00589 * 1 2 3 33 33 H 1.09003 * 109.47040 * 60.00372 * 1 2 3 34 34 H 1.09001 * 110.27390 * 359.75998 * 9 7 5 35 35 H 1.09003 * 110.27132 * 121.82646 * 9 7 5 36 36 H 1.08000 * 119.96910 * 359.97438 * 13 12 10 37 37 H 1.07994 * 119.91642 * 180.02562 * 14 13 12 38 38 H 1.08001 * 119.90480 * 180.02562 * 15 14 13 39 39 H 1.08001 * 119.83409 * 179.97438 * 16 15 14 40 40 H 1.09005 * 109.47477 * 269.99926 * 21 20 18 41 41 H 1.08993 * 109.47146 * 30.00231 * 21 20 18 42 42 H 1.09008 * 109.47223 * 150.00153 * 21 20 18 43 43 H 1.08998 * 109.47049 * 329.99451 * 22 20 18 44 44 H 1.09001 * 109.46896 * 209.99722 * 22 20 18 45 45 H 0.97000 * 119.99706 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6844 1.1857 5 6 2.2170 0.0642 2.2812 6 8 1.9980 1.2520 2.2503 7 6 2.7191 -0.5768 3.5493 8 1 3.6759 -1.0664 3.3676 9 6 1.6942 -1.5954 4.0667 10 6 1.2915 -1.0974 5.4337 11 8 0.4934 -1.6267 6.1774 12 6 2.0366 0.1427 5.7065 13 6 2.0140 0.9797 6.8333 14 6 2.8068 2.1049 6.8727 15 6 3.6286 2.4145 5.8028 16 6 3.6573 1.5964 4.6884 17 6 2.8679 0.4633 4.6338 18 6 2.0325 -0.7105 -1.2304 19 8 2.6531 -1.7467 -1.1212 20 7 1.7921 -0.1943 -2.4519 21 6 1.0428 1.0577 -2.5836 22 6 2.2801 -0.8853 -3.6481 23 6 1.2331 -1.8564 -4.1294 24 1 0.2996 -1.9529 -3.5951 25 6 1.4691 -2.6256 -5.2492 26 7 0.5577 -3.4770 -5.6662 27 14 3.0836 -2.4582 -6.1739 28 1 4.0754 -3.4115 -5.6148 29 1 2.8640 -2.7587 -7.6115 30 1 3.5947 -1.0713 -6.0306 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 0.8277 -1.6280 3.4063 35 1 2.1489 -2.5831 4.1433 36 1 1.3743 0.7410 7.6700 37 1 2.7878 2.7469 7.7409 38 1 4.2490 3.2978 5.8383 39 1 4.3004 1.8438 3.8567 40 1 -0.0214 0.8372 -2.6678 41 1 1.2167 1.6792 -1.7053 42 1 1.3756 1.5882 -3.4758 43 1 3.1947 -1.4269 -3.4070 44 1 2.4858 -0.1552 -4.4309 45 1 0.7236 -4.0178 -6.4542 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789301485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:56 Heat of formation + Delta-G solvation = -134.232266 kcal Electronic energy + Delta-G solvation = -29842.454980 eV Core-core repulsion = 25596.973085 eV Total energy + Delta-G solvation = -4245.481895 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.47234 -41.40821 -40.45807 -39.24550 -37.73439 -36.75479 -36.19222 -34.83579 -33.17350 -32.11268 -30.50180 -30.14481 -28.15298 -27.69300 -25.90666 -24.49712 -24.00772 -23.12982 -21.50083 -21.16548 -20.42164 -19.25692 -19.10362 -18.30846 -17.82521 -17.63902 -17.21809 -16.92740 -16.90073 -16.39872 -16.25221 -16.16168 -15.70399 -15.26068 -14.99813 -14.84452 -14.77609 -14.37288 -14.35156 -14.16296 -13.75224 -13.73894 -13.69971 -13.51004 -13.29876 -13.22099 -12.98768 -12.83246 -12.69043 -12.56762 -12.44310 -12.07725 -12.00571 -11.95934 -11.74489 -11.65165 -10.89535 -10.82566 -10.69077 -10.01346 -9.90929 -9.51844 -8.33101 -6.38642 -0.49477 0.23919 0.92930 1.19563 1.29765 1.34973 1.38653 1.46648 1.55899 2.27724 2.31982 2.71503 2.75288 3.01128 3.09111 3.34088 3.37365 3.49756 3.73366 3.78716 3.83436 3.95780 4.07297 4.15523 4.30765 4.35586 4.45144 4.48294 4.54801 4.56832 4.63356 4.67640 4.74355 4.75927 4.85785 4.89719 4.95831 5.07227 5.21660 5.26158 5.35239 5.42590 5.43375 5.52410 5.85336 6.21467 6.27965 6.43211 6.55513 6.63004 7.14448 7.28463 8.83644 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.021486 B = 0.002325 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.877559 B =12040.977619 C =12471.582335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.082 3.918 3 H 0.129 0.871 4 O -0.337 6.337 5 C 0.471 3.529 6 O -0.510 6.510 7 C -0.037 4.037 8 H 0.161 0.839 9 C -0.161 4.161 10 C 0.411 3.589 11 O -0.474 6.474 12 C -0.204 4.204 13 C -0.064 4.064 14 C -0.124 4.124 15 C -0.076 4.076 16 C -0.106 4.106 17 C -0.045 4.045 18 C 0.502 3.498 19 O -0.573 6.573 20 N -0.596 5.596 21 C 0.068 3.932 22 C 0.223 3.777 23 C -0.537 4.537 24 H 0.030 0.970 25 C 0.010 3.990 26 N -0.945 5.945 27 Si 0.947 3.053 28 H -0.277 1.277 29 H -0.277 1.277 30 H -0.234 1.234 31 H 0.057 0.943 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.114 0.886 35 H 0.150 0.850 36 H 0.136 0.864 37 H 0.162 0.838 38 H 0.163 0.837 39 H 0.137 0.863 40 H 0.062 0.938 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.021 0.979 44 H 0.059 0.941 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.908 16.512 23.351 29.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.024 3.976 3 H 0.147 0.853 4 O -0.253 6.253 5 C 0.314 3.686 6 O -0.397 6.397 7 C -0.056 4.056 8 H 0.179 0.821 9 C -0.198 4.198 10 C 0.291 3.709 11 O -0.351 6.351 12 C -0.205 4.205 13 C -0.082 4.082 14 C -0.142 4.142 15 C -0.094 4.094 16 C -0.124 4.124 17 C -0.046 4.046 18 C 0.289 3.711 19 O -0.452 6.452 20 N -0.328 5.328 21 C -0.073 4.073 22 C 0.101 3.899 23 C -0.575 4.575 24 H 0.049 0.951 25 C -0.188 4.188 26 N -0.585 5.585 27 Si 0.770 3.230 28 H -0.203 1.203 29 H -0.202 1.202 30 H -0.157 1.157 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.122 0.878 34 H 0.133 0.867 35 H 0.167 0.833 36 H 0.154 0.846 37 H 0.179 0.821 38 H 0.180 0.820 39 H 0.155 0.845 40 H 0.081 0.919 41 H 0.115 0.885 42 H 0.108 0.892 43 H 0.039 0.961 44 H 0.077 0.923 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.684 15.952 23.582 29.245 hybrid contribution 0.090 -0.640 -0.973 1.168 sum 6.774 15.312 22.609 28.134 Atomic orbital electron populations 1.22292 0.90459 1.03933 1.05721 1.22516 0.96979 0.97227 0.80858 0.85328 1.86635 1.76661 1.42155 1.19821 1.23753 0.74039 0.85716 0.85097 1.90655 1.48025 1.16820 1.84239 1.20264 1.03217 0.95215 0.86872 0.82122 1.22339 1.00607 1.01453 0.95360 1.22683 0.77513 0.83156 0.87551 1.90548 1.30137 1.61049 1.53374 1.21103 1.02153 0.99446 0.97832 1.21396 0.97375 0.93234 0.96193 1.21501 0.95788 0.96701 1.00204 1.21752 0.96940 0.98978 0.91739 1.20868 0.98982 0.93055 0.99486 1.20038 0.96055 0.95274 0.93197 1.20609 0.80201 0.85183 0.85134 1.90671 1.42637 1.25074 1.86822 1.47811 1.54603 1.25191 1.05242 1.22218 0.96534 0.83929 1.04657 1.19467 0.94226 0.92807 0.83400 1.21528 1.02510 1.22207 1.11271 0.95145 1.25862 1.00761 0.94042 0.98111 1.70050 1.36853 1.25692 1.25874 0.85723 0.78930 0.80692 0.77656 1.20264 1.20196 1.15716 0.92407 0.89247 0.87788 0.86748 0.83254 0.84587 0.82074 0.81987 0.84521 0.91912 0.88490 0.89205 0.96052 0.92273 0.92283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.26 9.27 71.98 0.67 -3.59 16 2 C 0.08 2.42 2.16 29.85 0.06 2.49 16 3 H 0.13 3.18 6.14 -2.39 -0.01 3.17 16 4 O -0.34 -9.89 9.40 -45.03 -0.42 -10.32 16 5 C 0.47 11.24 6.97 71.24 0.50 11.74 16 6 O -0.51 -13.29 14.88 21.98 0.33 -12.97 16 7 C -0.04 -0.65 3.44 -12.03 -0.04 -0.70 16 8 H 0.16 2.04 8.14 -2.39 -0.02 2.02 16 9 C -0.16 -2.80 6.49 30.09 0.20 -2.60 16 10 C 0.41 8.82 7.77 28.13 0.22 9.04 16 11 O -0.47 -13.05 18.02 -2.97 -0.05 -13.10 16 12 C -0.20 -3.90 6.11 -20.10 -0.12 -4.02 16 13 C -0.06 -0.99 10.11 22.66 0.23 -0.76 16 14 C -0.12 -1.34 10.02 22.18 0.22 -1.11 16 15 C -0.08 -0.81 10.04 22.32 0.22 -0.59 16 16 C -0.11 -1.57 9.47 22.27 0.21 -1.36 16 17 C -0.05 -0.80 5.02 -19.48 -0.10 -0.90 16 18 C 0.50 20.10 7.10 87.66 0.62 20.73 16 19 O -0.57 -28.68 16.09 15.71 0.25 -28.42 16 20 N -0.60 -23.15 2.86 -851.12 -2.43 -25.58 16 21 C 0.07 1.79 8.96 127.77 1.15 2.94 16 22 C 0.22 10.44 4.27 85.63 0.37 10.81 16 23 C -0.54 -30.83 9.94 25.60 0.25 -30.57 16 24 H 0.03 1.96 8.06 -2.92 -0.02 1.93 16 25 C 0.01 0.60 5.47 84.66 0.46 1.06 16 26 N -0.94 -59.06 13.96 21.45 0.30 -58.76 16 27 Si 0.95 43.34 27.47 68.60 1.88 45.22 16 28 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 29 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 30 H -0.23 -9.43 6.54 99.48 0.65 -8.78 16 31 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 32 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.10 2.37 5.12 -2.39 -0.01 2.35 16 34 H 0.11 2.14 7.67 -2.39 -0.02 2.12 16 35 H 0.15 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 37 H 0.16 0.74 8.06 -2.91 -0.02 0.72 16 38 H 0.16 0.74 8.06 -2.91 -0.02 0.72 16 39 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 40 H 0.06 1.64 7.02 -2.38 -0.02 1.63 16 41 H 0.10 1.83 6.08 -2.39 -0.01 1.81 16 42 H 0.09 2.09 7.89 -2.38 -0.02 2.07 16 43 H 0.02 1.08 6.86 -2.39 -0.02 1.06 16 44 H 0.06 2.48 6.94 -2.39 -0.02 2.46 16 45 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -83.70 380.95 5.94 -77.75 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.97 Total: 13.59 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: 5.12 Total: 12.59 kcal Atomic # 7 Polarization: -82.22 SS G_CDS: -2.13 Total: -84.35 kcal Atomic # 8 Polarization: -64.91 SS G_CDS: 0.10 Total: -64.81 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.88 Total: 45.22 kcal Total: -83.70 5.94 -77.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789301485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.478 kcal (2) G-P(sol) polarization free energy of solvation -83.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds