Wall clock time and date at job start Wed Apr 1 2020 03:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46507 * 109.47261 * 2 1 4 4 C 1.46497 * 120.00078 * 89.99850 * 3 2 1 5 5 C 1.50694 * 109.47115 * 90.00278 * 4 3 2 6 6 H 1.08000 * 120.00563 * 359.97438 * 5 4 3 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 C 1.34777 * 119.99744 * 269.99948 * 3 2 1 14 14 O 1.21279 * 119.99709 * 179.97438 * 13 3 2 15 15 C 1.50698 * 119.99969 * 359.97438 * 13 3 2 16 16 O 1.45206 * 109.47122 * 180.02562 * 15 13 3 17 17 C 1.34223 * 116.99951 * 180.02562 * 16 15 13 18 18 O 1.20820 * 120.00208 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.99840 * 180.02562 * 17 16 15 20 20 H 1.08998 * 110.06884 * 58.46769 * 19 17 16 21 21 C 1.53490 * 110.08582 * 296.87545 * 19 17 16 22 22 C 1.50951 * 105.33651 * 240.79020 * 21 19 17 23 23 O 1.21254 * 125.94752 * 180.02562 * 22 21 19 24 24 C 1.47230 * 108.10298 * 359.97438 * 22 21 19 25 25 C 1.40378 * 130.01129 * 180.02562 * 24 22 21 26 26 C 1.37694 * 120.06584 * 179.97438 * 25 24 22 27 27 C 1.38417 * 120.16077 * 359.97438 * 26 25 24 28 28 C 1.38277 * 120.20120 * 0.04283 * 27 26 25 29 29 C 1.38215 * 120.33018 * 359.93203 * 28 27 26 30 30 H 1.08995 * 109.47315 * 299.99705 * 1 2 3 31 31 H 1.08994 * 109.47068 * 60.00565 * 1 2 3 32 32 H 1.09000 * 109.46997 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47572 * 239.99608 * 2 1 3 34 34 H 1.09004 * 109.47218 * 119.99925 * 2 1 3 35 35 H 1.09007 * 109.47078 * 329.99917 * 4 3 2 36 36 H 1.09003 * 109.46733 * 210.00639 * 4 3 2 37 37 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 38 38 H 1.09002 * 109.47321 * 300.00085 * 15 13 3 39 39 H 1.09000 * 109.47711 * 59.99662 * 15 13 3 40 40 H 1.08998 * 110.27180 * 359.75364 * 21 19 17 41 41 H 1.09004 * 110.26697 * 121.82128 * 21 19 17 42 42 H 1.08007 * 119.96479 * 359.97438 * 25 24 22 43 43 H 1.07997 * 119.91847 * 180.02562 * 26 25 24 44 44 H 1.08003 * 119.89991 * 180.02562 * 27 26 25 45 45 H 1.07999 * 119.83883 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 1.2687 5 6 3.6857 1.8351 1.7037 6 1 4.3427 1.2303 1.0962 7 6 4.1490 2.3898 2.8780 8 7 3.3490 3.1259 3.6181 9 14 5.9130 2.0957 3.4175 10 1 6.1606 2.7959 4.7036 11 1 6.1401 0.6390 3.5948 12 1 6.8409 2.6190 2.3830 13 6 2.2430 2.0166 -1.1672 14 8 2.6468 3.1601 -1.1672 15 6 1.9924 1.3059 -2.4723 16 8 2.3074 2.1953 -3.5760 17 6 2.1363 1.7115 -4.8163 18 8 1.7371 0.5822 -4.9746 19 6 2.4434 2.5766 -6.0114 20 1 3.4838 2.9001 -5.9816 21 6 1.5113 3.7960 -6.0330 22 6 0.7393 3.6856 -7.3254 23 8 -0.1048 4.4620 -7.7189 24 6 1.1906 2.4716 -8.0257 25 6 0.7814 1.9348 -9.2565 26 6 1.3492 0.7710 -9.7245 27 6 2.3253 0.1267 -8.9841 28 6 2.7348 0.6475 -7.7704 29 6 2.1748 1.8151 -7.2873 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.5816 1.6878 2.0284 36 1 2.0954 3.1411 1.1383 37 1 3.6748 3.5157 4.4443 38 1 2.6229 0.4186 -2.5298 39 1 0.9445 1.0113 -2.5303 40 1 0.8302 3.7657 -5.1825 41 1 2.0941 4.7170 -6.0186 42 1 0.0203 2.4352 -9.8369 43 1 1.0329 0.3603 -10.6719 44 1 2.7682 -0.7857 -9.3554 45 1 3.4965 0.1398 -7.1973 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789307956.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:41 Heat of formation + Delta-G solvation = -121.972883 kcal Electronic energy + Delta-G solvation = -29461.282471 eV Core-core repulsion = 25216.332182 eV Total energy + Delta-G solvation = -4244.950288 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.53692 -40.20711 -38.99002 -38.45839 -36.57065 -35.42700 -35.36018 -32.87839 -31.49713 -30.25786 -30.02259 -29.14748 -27.36600 -26.37521 -23.41638 -23.20232 -23.05068 -22.31815 -20.69338 -20.41668 -18.76176 -18.07453 -17.24590 -17.08479 -16.53088 -16.42192 -16.21385 -16.08165 -15.83167 -15.51207 -14.93727 -14.71798 -14.38371 -14.33705 -14.16376 -13.66672 -13.52642 -13.42553 -13.10723 -12.98768 -12.88361 -12.49817 -12.24097 -12.14686 -12.09257 -12.02083 -11.67605 -11.48304 -11.27274 -11.00275 -10.93439 -10.72048 -10.66326 -10.56872 -10.18476 -10.07525 -9.71978 -9.37741 -9.29590 -9.05944 -8.47721 -7.80771 -6.09034 -4.14200 0.20408 0.86700 1.92126 2.01513 2.28229 3.18315 3.29224 3.33980 3.35093 3.37574 3.43771 3.80422 3.82019 4.09186 4.39994 4.47056 4.55265 4.60022 4.61696 4.78984 4.79731 4.92414 5.04907 5.07763 5.12976 5.23779 5.25591 5.30444 5.33455 5.38977 5.53714 5.55695 5.68182 5.87349 5.93186 5.94609 6.00118 6.14655 6.19391 6.40325 6.41905 6.94569 7.08248 7.35135 7.41234 7.51646 7.86493 8.16426 8.24107 8.79185 8.94162 9.50835 10.99094 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017500 B = 0.002237 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.593418 B =12514.089501 C =12590.325797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.591 5.591 4 C 0.248 3.752 5 C -0.530 4.530 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.286 1.286 11 H -0.277 1.277 12 H -0.276 1.276 13 C 0.506 3.494 14 O -0.518 6.518 15 C 0.049 3.951 16 O -0.324 6.324 17 C 0.468 3.532 18 O -0.497 6.497 19 C -0.041 4.041 20 H 0.139 0.861 21 C -0.162 4.162 22 C 0.410 3.590 23 O -0.436 6.436 24 C -0.182 4.182 25 C -0.053 4.053 26 C -0.129 4.129 27 C -0.083 4.083 28 C -0.093 4.093 29 C -0.036 4.036 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.036 0.964 36 H 0.045 0.955 37 H 0.265 0.735 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.120 0.880 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.133 0.867 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.039 -7.210 -24.013 25.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.325 5.325 4 C 0.130 3.870 5 C -0.568 4.568 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.727 3.273 10 H -0.211 1.211 11 H -0.202 1.202 12 H -0.201 1.201 13 C 0.291 3.709 14 O -0.394 6.394 15 C -0.028 4.028 16 O -0.239 6.239 17 C 0.309 3.691 18 O -0.384 6.384 19 C -0.060 4.060 20 H 0.156 0.844 21 C -0.200 4.200 22 C 0.287 3.713 23 O -0.310 6.310 24 C -0.183 4.183 25 C -0.072 4.072 26 C -0.147 4.147 27 C -0.101 4.101 28 C -0.111 4.111 29 C -0.037 4.037 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.138 0.862 41 H 0.147 0.853 42 H 0.149 0.851 43 H 0.150 0.850 44 H 0.151 0.849 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.401 -6.406 -24.007 25.234 hybrid contribution 1.011 -0.595 0.550 1.295 sum -3.390 -7.000 -23.458 24.713 Atomic orbital electron populations 1.22232 0.96498 1.01732 1.02433 1.21515 0.93774 0.83935 1.03040 1.48221 1.63731 1.13409 1.07143 1.19335 0.96486 0.93708 0.77509 1.21374 0.96829 1.32231 1.06412 0.92458 1.24935 0.97925 0.94840 0.96340 1.69919 1.35772 1.33218 1.14330 0.86543 0.84671 0.78258 0.77861 1.21144 1.20237 1.20141 1.19678 0.79812 0.87170 0.84252 1.90722 1.44502 1.17438 1.86707 1.23031 1.02827 0.92646 0.84321 1.86555 1.78264 1.44983 1.14064 1.23215 0.74768 0.86635 0.84471 1.90693 1.41540 1.19583 1.86623 1.20160 1.04232 0.93847 0.87798 0.84383 1.22308 0.99604 0.98910 0.99147 1.22398 0.79825 0.82663 0.86421 1.90566 1.26892 1.43830 1.69750 1.21058 1.00502 0.99290 0.97436 1.21137 0.97724 0.94735 0.93570 1.21136 0.97371 0.95572 1.00578 1.21352 0.95833 0.99198 0.93731 1.20619 1.00288 0.94274 0.95890 1.19979 0.95367 0.94790 0.93551 0.91741 0.93158 0.91872 0.91779 0.89369 0.94616 0.93682 0.92576 0.88519 0.88643 0.86190 0.85287 0.85118 0.84999 0.84917 0.85187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 10.24 37.16 0.38 -1.81 16 2 C 0.10 1.54 5.93 -4.04 -0.02 1.52 16 3 N -0.59 -12.01 2.46 -175.06 -0.43 -12.44 16 4 C 0.25 6.28 5.16 -5.20 -0.03 6.25 16 5 C -0.53 -14.64 9.39 -34.44 -0.32 -14.96 16 6 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.08 13.29 55.43 0.74 -25.35 16 9 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.51 10.28 7.75 -10.99 -0.09 10.19 16 14 O -0.52 -12.86 16.08 -14.10 -0.23 -13.08 16 15 C 0.05 0.75 4.50 36.00 0.16 0.91 16 16 O -0.32 -4.87 9.74 -45.89 -0.45 -5.31 16 17 C 0.47 5.88 6.99 36.01 0.25 6.13 16 18 O -0.50 -7.04 15.41 -18.75 -0.29 -7.32 16 19 C -0.04 -0.39 3.44 -92.53 -0.32 -0.71 16 20 H 0.14 0.96 8.14 -51.93 -0.42 0.53 16 21 C -0.16 -1.48 6.49 -27.51 -0.18 -1.66 16 22 C 0.41 4.44 7.77 -30.53 -0.24 4.20 16 23 O -0.44 -5.90 18.02 5.58 0.10 -5.80 16 24 C -0.18 -1.82 6.11 -104.98 -0.64 -2.46 16 25 C -0.05 -0.46 10.11 -38.98 -0.39 -0.85 16 26 C -0.13 -0.88 10.02 -39.71 -0.40 -1.28 16 27 C -0.08 -0.58 10.04 -39.50 -0.40 -0.97 16 28 C -0.09 -0.79 9.47 -39.58 -0.37 -1.16 16 29 C -0.04 -0.35 5.02 -104.04 -0.52 -0.87 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.05 0.62 7.22 -51.93 -0.38 0.24 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.81 6.44 -51.93 -0.33 0.47 16 34 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 35 H 0.04 0.91 8.07 -51.92 -0.42 0.49 16 36 H 0.05 1.29 7.42 -51.93 -0.39 0.91 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.10 1.31 7.39 -51.93 -0.38 0.93 16 39 H 0.10 1.27 7.18 -51.93 -0.37 0.90 16 40 H 0.12 1.16 7.67 -51.93 -0.40 0.77 16 41 H 0.13 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 43 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 44 H 0.13 0.59 8.06 -52.48 -0.42 0.16 16 45 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 390.14 15.07 5.88 5.88 Total: -1.00 -35.55 390.14 -8.94 -44.49 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -6.02 Total: -1.62 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: -3.22 Total: 4.11 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.31 Total: -37.79 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -0.86 Total: -31.52 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.55 -8.94 -44.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789307956.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.483 kcal (2) G-P(sol) polarization free energy of solvation -35.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds