Wall clock time and date at job start Wed Apr 1 2020 03:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46507 * 109.47261 * 2 1 4 4 C 1.46497 * 120.00078 * 89.99850 * 3 2 1 5 5 C 1.50694 * 109.47115 * 90.00278 * 4 3 2 6 6 H 1.08000 * 120.00563 * 359.97438 * 5 4 3 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 C 1.34777 * 119.99744 * 269.99948 * 3 2 1 14 14 O 1.21279 * 119.99709 * 179.97438 * 13 3 2 15 15 C 1.50698 * 119.99969 * 359.97438 * 13 3 2 16 16 O 1.45206 * 109.47122 * 180.02562 * 15 13 3 17 17 C 1.34223 * 116.99951 * 180.02562 * 16 15 13 18 18 O 1.20820 * 120.00208 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.99840 * 180.02562 * 17 16 15 20 20 H 1.08998 * 110.06884 * 58.46769 * 19 17 16 21 21 C 1.53490 * 110.08582 * 296.87545 * 19 17 16 22 22 C 1.50951 * 105.33651 * 240.79020 * 21 19 17 23 23 O 1.21254 * 125.94752 * 180.02562 * 22 21 19 24 24 C 1.47230 * 108.10298 * 359.97438 * 22 21 19 25 25 C 1.40378 * 130.01129 * 180.02562 * 24 22 21 26 26 C 1.37694 * 120.06584 * 179.97438 * 25 24 22 27 27 C 1.38417 * 120.16077 * 359.97438 * 26 25 24 28 28 C 1.38277 * 120.20120 * 0.04283 * 27 26 25 29 29 C 1.38215 * 120.33018 * 359.93203 * 28 27 26 30 30 H 1.08995 * 109.47315 * 299.99705 * 1 2 3 31 31 H 1.08994 * 109.47068 * 60.00565 * 1 2 3 32 32 H 1.09000 * 109.46997 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47572 * 239.99608 * 2 1 3 34 34 H 1.09004 * 109.47218 * 119.99925 * 2 1 3 35 35 H 1.09007 * 109.47078 * 329.99917 * 4 3 2 36 36 H 1.09003 * 109.46733 * 210.00639 * 4 3 2 37 37 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 38 38 H 1.09002 * 109.47321 * 300.00085 * 15 13 3 39 39 H 1.09000 * 109.47711 * 59.99662 * 15 13 3 40 40 H 1.08998 * 110.27180 * 359.75364 * 21 19 17 41 41 H 1.09004 * 110.26697 * 121.82128 * 21 19 17 42 42 H 1.08007 * 119.96479 * 359.97438 * 25 24 22 43 43 H 1.07997 * 119.91847 * 180.02562 * 26 25 24 44 44 H 1.08003 * 119.89991 * 180.02562 * 27 26 25 45 45 H 1.07999 * 119.83883 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 1.2687 5 6 3.6857 1.8351 1.7037 6 1 4.3427 1.2303 1.0962 7 6 4.1490 2.3898 2.8780 8 7 3.3490 3.1259 3.6181 9 14 5.9130 2.0957 3.4175 10 1 6.1606 2.7959 4.7036 11 1 6.1401 0.6390 3.5948 12 1 6.8409 2.6190 2.3830 13 6 2.2430 2.0166 -1.1672 14 8 2.6468 3.1601 -1.1672 15 6 1.9924 1.3059 -2.4723 16 8 2.3074 2.1953 -3.5760 17 6 2.1363 1.7115 -4.8163 18 8 1.7371 0.5822 -4.9746 19 6 2.4434 2.5766 -6.0114 20 1 3.4838 2.9001 -5.9816 21 6 1.5113 3.7960 -6.0330 22 6 0.7393 3.6856 -7.3254 23 8 -0.1048 4.4620 -7.7189 24 6 1.1906 2.4716 -8.0257 25 6 0.7814 1.9348 -9.2565 26 6 1.3492 0.7710 -9.7245 27 6 2.3253 0.1267 -8.9841 28 6 2.7348 0.6475 -7.7704 29 6 2.1748 1.8151 -7.2873 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.5816 1.6878 2.0284 36 1 2.0954 3.1411 1.1383 37 1 3.6748 3.5157 4.4443 38 1 2.6229 0.4186 -2.5298 39 1 0.9445 1.0113 -2.5303 40 1 0.8302 3.7657 -5.1825 41 1 2.0941 4.7170 -6.0186 42 1 0.0203 2.4352 -9.8369 43 1 1.0329 0.3603 -10.6719 44 1 2.7682 -0.7857 -9.3554 45 1 3.4965 0.1398 -7.1973 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789307956.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:40 Heat of formation + Delta-G solvation = -142.047186 kcal Electronic energy + Delta-G solvation = -29462.152958 eV Core-core repulsion = 25216.332182 eV Total energy + Delta-G solvation = -4245.820775 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.40303 -41.25735 -40.44880 -39.24116 -37.68820 -36.97302 -36.17907 -34.93078 -32.13212 -31.76463 -30.96988 -30.24349 -28.65150 -27.71129 -24.95748 -24.26126 -24.01580 -23.42783 -21.53460 -21.17543 -20.27494 -19.10568 -18.63035 -18.22023 -18.06573 -17.60673 -17.35794 -17.10516 -16.89124 -16.42104 -16.34625 -15.98737 -15.76591 -15.13969 -14.98001 -14.87197 -14.74707 -14.50220 -14.18376 -14.03348 -13.86635 -13.73498 -13.60325 -13.37996 -13.27677 -13.07712 -12.90449 -12.69797 -12.65045 -12.51711 -12.22118 -12.08133 -12.05104 -11.80851 -11.72983 -11.67707 -10.89427 -10.72894 -10.63677 -10.00824 -9.90319 -9.54323 -8.22542 -6.37091 -0.49083 0.24501 0.94551 1.19995 1.30405 1.38188 1.42217 1.49353 1.62592 2.29251 2.43118 2.71999 2.77135 3.07646 3.09838 3.36842 3.41976 3.57613 3.83565 3.92026 3.95785 3.97586 4.08460 4.15075 4.16771 4.36097 4.37533 4.46648 4.56326 4.58372 4.68095 4.76205 4.87487 4.94174 4.96259 5.02717 5.16364 5.22009 5.26764 5.35506 5.35757 5.43180 5.54284 5.79694 5.85958 6.04490 6.28164 6.46219 6.63129 6.72171 7.21748 7.37126 8.84689 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017500 B = 0.002237 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.593418 B =12514.089501 C =12590.325797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.094 3.906 3 N -0.596 5.596 4 C 0.263 3.737 5 C -0.544 4.544 6 H 0.056 0.944 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.967 3.033 10 H -0.280 1.280 11 H -0.260 1.260 12 H -0.277 1.277 13 C 0.499 3.501 14 O -0.576 6.576 15 C 0.061 3.939 16 O -0.341 6.341 17 C 0.472 3.528 18 O -0.511 6.511 19 C -0.036 4.036 20 H 0.165 0.835 21 C -0.161 4.161 22 C 0.410 3.590 23 O -0.475 6.475 24 C -0.205 4.205 25 C -0.064 4.064 26 C -0.125 4.125 27 C -0.077 4.077 28 C -0.105 4.105 29 C -0.045 4.045 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.028 0.972 36 H -0.001 1.001 37 H 0.267 0.733 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.112 0.888 41 H 0.150 0.850 42 H 0.136 0.864 43 H 0.161 0.839 44 H 0.163 0.837 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.027 -9.926 -25.896 27.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.028 4.028 3 N -0.328 5.328 4 C 0.142 3.858 5 C -0.583 4.583 6 H 0.074 0.926 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.791 3.209 10 H -0.205 1.205 11 H -0.184 1.184 12 H -0.202 1.202 13 C 0.286 3.714 14 O -0.455 6.455 15 C -0.015 4.015 16 O -0.257 6.257 17 C 0.315 3.685 18 O -0.399 6.399 19 C -0.054 4.054 20 H 0.182 0.818 21 C -0.198 4.198 22 C 0.290 3.710 23 O -0.352 6.352 24 C -0.206 4.206 25 C -0.082 4.082 26 C -0.142 4.142 27 C -0.094 4.094 28 C -0.123 4.123 29 C -0.046 4.046 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.100 0.900 35 H 0.046 0.954 36 H 0.018 0.982 37 H 0.076 0.924 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.130 0.870 41 H 0.168 0.832 42 H 0.154 0.846 43 H 0.179 0.821 44 H 0.180 0.820 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.406 -9.188 -25.906 27.697 hybrid contribution 0.656 0.188 1.061 1.261 sum -2.749 -9.000 -24.845 26.568 Atomic orbital electron populations 1.22179 0.94481 1.03747 1.01788 1.21860 0.95421 0.81022 1.04456 1.48211 1.63612 1.15248 1.05732 1.18781 0.95584 0.91655 0.79777 1.21669 0.97785 1.32212 1.06615 0.92600 1.25858 1.02384 0.94450 0.96435 1.70044 1.37830 1.34080 1.14779 0.85472 0.79021 0.79027 0.77331 1.20511 1.18417 1.20242 1.20541 0.78364 0.86674 0.85810 1.90686 1.47056 1.20064 1.87727 1.22856 1.04732 0.92112 0.81825 1.86563 1.78741 1.45516 1.14875 1.23729 0.73929 0.86794 0.84070 1.90677 1.42260 1.20359 1.86595 1.20257 1.05607 0.93224 0.86352 0.81805 1.22338 0.99564 0.99937 0.97959 1.22703 0.78939 0.82447 0.86871 1.90544 1.28649 1.45199 1.70797 1.21106 1.01513 0.99421 0.98555 1.21392 0.98070 0.95525 0.93260 1.21500 0.96629 0.94589 1.01497 1.21758 0.95078 0.99775 0.92821 1.20880 1.00641 0.94025 0.96768 1.20048 0.95672 0.95427 0.93433 0.93780 0.92461 0.88439 0.88242 0.90040 0.95395 0.98243 0.92380 0.86110 0.86210 0.86977 0.83229 0.84640 0.82096 0.81961 0.84348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.89 10.24 71.98 0.74 -3.15 16 2 C 0.09 2.72 5.93 86.38 0.51 3.23 16 3 N -0.60 -24.43 2.46 -826.15 -2.03 -26.46 16 4 C 0.26 13.88 5.16 85.63 0.44 14.32 16 5 C -0.54 -30.72 9.39 25.60 0.24 -30.48 16 6 H 0.06 3.09 7.81 -2.91 -0.02 3.07 16 7 C 0.01 0.45 5.46 84.66 0.46 0.91 16 8 N -0.93 -55.51 13.29 21.45 0.28 -55.22 16 9 Si 0.97 44.14 29.54 68.60 2.03 46.17 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 13 C 0.50 20.41 7.75 87.66 0.68 21.09 16 14 O -0.58 -29.70 16.08 15.77 0.25 -29.45 16 15 C 0.06 1.77 4.50 71.24 0.32 2.09 16 16 O -0.34 -9.91 9.74 -45.00 -0.44 -10.35 16 17 C 0.47 11.14 6.99 71.24 0.50 11.64 16 18 O -0.51 -13.37 15.41 21.98 0.34 -13.03 16 19 C -0.04 -0.62 3.44 -12.03 -0.04 -0.67 16 20 H 0.16 1.95 8.14 -2.39 -0.02 1.93 16 21 C -0.16 -2.87 6.49 30.09 0.20 -2.68 16 22 C 0.41 8.97 7.77 28.13 0.22 9.19 16 23 O -0.47 -13.29 18.02 -2.95 -0.05 -13.34 16 24 C -0.20 -3.95 6.11 -20.10 -0.12 -4.07 16 25 C -0.06 -1.01 10.11 22.66 0.23 -0.78 16 26 C -0.12 -1.35 10.02 22.18 0.22 -1.13 16 27 C -0.08 -0.81 10.04 22.32 0.22 -0.59 16 28 C -0.11 -1.53 9.47 22.27 0.21 -1.32 16 29 C -0.05 -0.80 5.02 -19.48 -0.10 -0.90 16 30 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.06 1.28 7.22 -2.39 -0.02 1.26 16 32 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.10 2.18 6.44 -2.39 -0.02 2.16 16 34 H 0.08 2.47 8.07 -2.38 -0.02 2.45 16 35 H 0.03 1.49 8.07 -2.38 -0.02 1.47 16 36 H 0.00 -0.03 7.42 -2.39 -0.02 -0.05 16 37 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 38 H 0.12 2.91 7.39 -2.39 -0.02 2.89 16 39 H 0.12 2.87 7.18 -2.39 -0.02 2.86 16 40 H 0.11 2.21 7.67 -2.39 -0.02 2.19 16 41 H 0.15 1.99 8.14 -2.38 -0.02 1.97 16 42 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 43 H 0.16 0.76 8.06 -2.91 -0.02 0.74 16 44 H 0.16 0.73 8.06 -2.91 -0.02 0.70 16 45 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -80.94 390.14 6.33 -74.61 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 1.01 Total: 10.37 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: 4.93 Total: 16.69 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -1.74 Total: -81.68 kcal Atomic # 8 Polarization: -66.27 SS G_CDS: 0.10 Total: -66.17 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -80.94 6.33 -74.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789307956.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.434 kcal (2) G-P(sol) polarization free energy of solvation -80.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds