Wall clock time and date at job start Wed Apr 1 2020 03:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47045 * 2 1 4 4 O 1.42902 * 109.47349 * 240.00369 * 2 1 3 5 5 C 1.34934 * 116.99937 * 89.99488 * 4 2 1 6 6 O 1.21650 * 119.99964 * 0.02562 * 5 4 2 7 7 C 1.41758 * 120.00149 * 180.02562 * 5 4 2 8 8 C 1.35549 * 120.07063 * 180.02562 * 7 5 4 9 9 C 1.46996 * 118.16687 * 182.36633 * 8 7 5 10 10 C 1.39441 * 121.51818 * 192.17086 * 9 8 7 11 11 C 1.37931 * 119.56693 * 179.31437 * 10 9 8 12 12 C 1.38583 * 120.33165 * 0.35418 * 11 10 9 13 13 C 1.38231 * 120.61273 * 0.69424 * 12 11 10 14 14 C 1.38376 * 119.88012 * 359.76855 * 13 12 11 15 15 O 1.35570 * 121.17815 * 177.64148 * 14 13 12 16 16 C 1.42722 * 117.55914 * 146.84857 * 15 14 13 17 17 C 1.50697 * 109.47298 * 120.00350 * 2 1 3 18 18 O 1.21287 * 119.99824 * 120.00403 * 17 2 1 19 19 N 1.34777 * 120.00133 * 299.99928 * 17 2 1 20 20 C 1.46503 * 119.99836 * 0.02562 * 19 17 2 21 21 C 1.46499 * 119.99852 * 180.02562 * 19 17 2 22 22 C 1.50699 * 109.47404 * 90.00126 * 21 19 17 23 23 H 1.08002 * 119.99764 * 0.02562 * 22 21 19 24 24 C 1.37874 * 120.00136 * 179.97438 * 22 21 19 25 25 N 1.31515 * 120.00023 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99932 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47278 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47011 * 120.00395 * 26 24 22 29 29 H 1.48501 * 109.46845 * 240.00121 * 26 24 22 30 30 H 1.09007 * 109.46820 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47348 * 299.99432 * 1 2 3 32 32 H 1.08997 * 109.47386 * 59.99578 * 1 2 3 33 33 H 1.08000 * 120.91600 * 2.64086 * 8 7 5 34 34 H 1.08006 * 120.21965 * 359.34112 * 10 9 8 35 35 H 1.08005 * 119.83673 * 180.33525 * 11 10 9 36 36 H 1.08001 * 119.69277 * 180.67494 * 12 11 10 37 37 H 1.08003 * 120.05675 * 179.80547 * 13 12 11 38 38 H 1.08999 * 109.25362 * 167.56235 * 16 15 14 39 39 H 1.08999 * 109.24550 * 287.01849 * 16 15 14 40 40 H 1.08998 * 109.46965 * 89.99666 * 20 19 17 41 41 H 1.08994 * 109.46788 * 209.99646 * 20 19 17 42 42 H 1.09002 * 109.46733 * 329.99642 * 20 19 17 43 43 H 1.09002 * 109.46888 * 210.00172 * 21 19 17 44 44 H 1.08998 * 109.47092 * 329.99744 * 21 19 17 45 45 H 0.96999 * 120.00071 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2104 0.0789 -2.2681 6 8 1.9899 1.2749 -2.2370 7 6 2.6818 -0.5241 -3.4613 8 6 2.8879 0.2306 -4.5682 9 6 3.3265 -0.4459 -5.7974 10 6 3.7978 0.2720 -6.8960 11 6 4.2125 -0.4047 -8.0241 12 6 4.1551 -1.7885 -8.0708 13 6 3.6695 -2.5096 -6.9961 14 6 3.2401 -1.8476 -5.8594 15 8 2.7153 -2.5250 -4.8088 16 6 2.9553 -2.0051 -3.5015 17 6 2.0323 -0.7105 1.2304 18 8 2.7297 -1.6965 1.1190 19 7 1.7068 -0.2501 2.4545 20 6 0.8640 0.9407 2.5890 21 6 2.1956 -0.9405 3.6506 22 6 3.5230 -0.3565 4.0605 23 1 3.9586 0.4488 3.4877 24 6 4.1807 -0.8494 5.1675 25 7 3.6499 -1.8296 5.8654 26 14 5.8257 -0.1249 5.6760 27 1 6.2025 0.9581 4.7325 28 1 5.7191 0.4293 7.0495 29 1 6.8635 -1.1868 5.6499 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 2.7382 1.2999 -4.5465 34 1 3.8384 1.3508 -6.8636 35 1 4.5834 0.1467 -8.8755 36 1 4.4926 -2.3084 -8.9553 37 1 3.6259 -3.5877 -7.0434 38 1 2.3038 -2.5103 -2.7885 39 1 3.9951 -2.1854 -3.2285 40 1 -0.1838 0.6424 2.6225 41 1 1.1218 1.4662 3.5085 42 1 1.0272 1.5995 1.7361 43 1 1.4777 -0.8154 4.4612 44 1 2.3171 -2.0017 3.4334 45 1 4.1128 -2.1767 6.6440 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791524578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:29 Heat of formation + Delta-G solvation = -99.408111 kcal Electronic energy + Delta-G solvation = -29510.734455 eV Core-core repulsion = 25266.762648 eV Total energy + Delta-G solvation = -4243.971806 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.37719 -40.57503 -39.00930 -37.85904 -36.68431 -34.97040 -34.59156 -32.93243 -31.80820 -30.94156 -30.82276 -27.69737 -26.39053 -26.26058 -25.55340 -24.17128 -23.04325 -22.69852 -21.49164 -19.34167 -18.95899 -18.54878 -17.61148 -17.14191 -16.59935 -16.48753 -16.38559 -15.90979 -15.68992 -15.31289 -15.19978 -14.74505 -14.59385 -14.23563 -14.03483 -13.83246 -13.60050 -13.36716 -13.10384 -12.92945 -12.59117 -12.40267 -12.23828 -12.14038 -12.04676 -11.79814 -11.66204 -11.39643 -11.17078 -11.15147 -10.91287 -10.70461 -10.63926 -10.59363 -10.55360 -10.18836 -9.65115 -9.12957 -8.92480 -8.46901 -8.39493 -7.74613 -6.07695 -4.12583 -0.10569 0.93468 1.37191 2.52217 2.64282 3.02658 3.24604 3.28376 3.36194 3.36417 3.40971 3.86178 4.12585 4.20537 4.30382 4.42416 4.56360 4.68979 4.78161 4.80560 4.92522 4.98675 5.07676 5.09232 5.16971 5.26977 5.28321 5.40518 5.50142 5.54334 5.62325 5.65795 5.72934 5.82459 5.88335 5.98561 6.01932 6.02720 6.21096 6.27290 6.36431 6.96141 6.97623 7.37131 7.44303 7.63011 7.88485 8.18236 8.27129 8.82661 8.97566 9.52606 11.00467 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016355 B = 0.002260 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.648107 B =12386.542526 C =13028.870745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.070 3.930 3 H 0.105 0.895 4 O -0.318 6.318 5 C 0.515 3.485 6 O -0.511 6.511 7 C -0.217 4.217 8 C 0.023 3.977 9 C -0.159 4.159 10 C -0.053 4.053 11 C -0.156 4.156 12 C -0.068 4.068 13 C -0.150 4.150 14 C 0.150 3.850 15 O -0.306 6.306 16 C 0.112 3.888 17 C 0.509 3.491 18 O -0.520 6.520 19 N -0.595 5.595 20 C 0.076 3.924 21 C 0.246 3.754 22 C -0.528 4.528 23 H 0.058 0.942 24 C 0.061 3.939 25 N -0.894 5.894 26 Si 0.899 3.101 27 H -0.273 1.273 28 H -0.283 1.283 29 H -0.282 1.282 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.153 0.847 34 H 0.134 0.866 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.138 0.862 38 H 0.133 0.867 39 H 0.081 0.919 40 H 0.052 0.948 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.036 0.964 44 H 0.046 0.954 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.339 4.048 -26.306 26.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.010 3.990 3 H 0.123 0.877 4 O -0.233 6.233 5 C 0.362 3.638 6 O -0.402 6.402 7 C -0.218 4.218 8 C 0.004 3.996 9 C -0.160 4.160 10 C -0.071 4.071 11 C -0.174 4.174 12 C -0.086 4.086 13 C -0.168 4.168 14 C 0.104 3.896 15 O -0.219 6.219 16 C 0.038 3.962 17 C 0.293 3.707 18 O -0.396 6.396 19 N -0.329 5.329 20 C -0.068 4.068 21 C 0.128 3.872 22 C -0.567 4.567 23 H 0.076 0.924 24 C -0.141 4.141 25 N -0.533 5.533 26 Si 0.726 3.274 27 H -0.198 1.198 28 H -0.209 1.209 29 H -0.208 1.208 30 H 0.090 0.910 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.170 0.830 34 H 0.152 0.848 35 H 0.148 0.852 36 H 0.151 0.849 37 H 0.156 0.844 38 H 0.151 0.849 39 H 0.099 0.901 40 H 0.070 0.930 41 H 0.097 0.903 42 H 0.077 0.923 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.128 3.547 -26.101 26.663 hybrid contribution 0.901 0.867 0.626 1.398 sum -3.228 4.414 -25.475 26.056 Atomic orbital electron populations 1.22439 0.92556 1.04109 1.04296 1.22239 0.95725 0.97904 0.83084 0.87719 1.86271 1.76650 1.40975 1.19414 1.19404 0.75079 0.85219 0.84084 1.90867 1.49183 1.15701 1.84494 1.20627 1.10053 0.97867 0.93262 1.22466 0.87607 0.99921 0.89560 1.19080 1.08283 0.92631 0.95961 1.21133 0.94721 1.00007 0.91255 1.21100 1.03232 0.94471 0.98628 1.21213 0.95832 0.94097 0.97456 1.20632 1.02388 1.00904 0.92915 1.19245 0.92073 0.89347 0.88891 1.85990 1.71125 1.50862 1.13936 1.21720 1.03782 0.89300 0.81393 1.19772 0.81686 0.85384 0.83822 1.90702 1.36979 1.26017 1.85871 1.48056 1.49770 1.28375 1.06671 1.21887 0.93945 0.88049 1.02928 1.19360 0.94380 0.93766 0.79721 1.21457 1.04828 1.19128 1.11266 0.92382 1.24937 0.98003 0.94941 0.96223 1.69938 1.38961 1.26020 1.18344 0.86429 0.83653 0.79077 0.78197 1.19803 1.20911 1.20821 0.90980 0.88896 0.91415 0.82984 0.84830 0.85209 0.84924 0.84446 0.84935 0.90071 0.92996 0.90315 0.92269 0.94578 0.93615 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 9.16 37.15 0.34 -1.98 16 2 C 0.07 1.17 2.13 -27.89 -0.06 1.11 16 3 H 0.11 1.70 6.37 -51.93 -0.33 1.37 16 4 O -0.32 -5.36 8.38 -47.90 -0.40 -5.76 16 5 C 0.51 7.79 7.63 32.08 0.24 8.03 16 6 O -0.51 -8.29 15.39 -19.38 -0.30 -8.59 16 7 C -0.22 -2.76 5.82 -104.26 -0.61 -3.36 16 8 C 0.02 0.25 9.55 -37.00 -0.35 -0.10 16 9 C -0.16 -1.58 5.82 -105.02 -0.61 -2.19 16 10 C -0.05 -0.40 9.85 -39.25 -0.39 -0.79 16 11 C -0.16 -0.99 10.03 -39.57 -0.40 -1.39 16 12 C -0.07 -0.44 10.02 -39.46 -0.40 -0.83 16 13 C -0.15 -1.25 10.01 -39.53 -0.40 -1.65 16 14 C 0.15 1.59 6.47 -38.65 -0.25 1.34 16 15 O -0.31 -3.64 10.38 -18.41 -0.19 -3.83 16 16 C 0.11 1.34 6.75 35.98 0.24 1.58 16 17 C 0.51 10.90 7.15 -10.99 -0.08 10.82 16 18 O -0.52 -13.41 16.08 -14.36 -0.23 -13.64 16 19 N -0.60 -12.58 2.86 -182.96 -0.52 -13.10 16 20 C 0.08 1.17 8.80 59.85 0.53 1.70 16 21 C 0.25 6.39 5.16 -5.19 -0.03 6.37 16 22 C -0.53 -14.96 9.39 -34.44 -0.32 -15.28 16 23 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 24 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 25 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 26 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 27 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 28 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 29 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.09 1.07 4.53 -51.93 -0.24 0.84 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.15 1.46 7.53 -52.49 -0.40 1.07 16 34 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 35 H 0.13 0.51 8.06 -52.48 -0.42 0.08 16 36 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 37 H 0.14 0.95 8.06 -52.48 -0.42 0.52 16 38 H 0.13 1.58 7.53 -51.93 -0.39 1.19 16 39 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.05 0.66 6.95 -51.93 -0.36 0.30 16 41 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 42 H 0.06 0.78 6.01 -51.93 -0.31 0.47 16 43 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 44 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 45 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 381.70 15.07 5.75 5.75 Total: -1.00 -35.23 381.70 -8.56 -43.79 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -5.75 Total: -0.84 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: -2.63 Total: 5.03 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.21 Total: -38.80 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -1.12 Total: -31.81 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.23 -8.56 -43.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791524578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.619 kcal (2) G-P(sol) polarization free energy of solvation -35.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds