Wall clock time and date at job start Wed Apr 1 2020 03:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50692 * 120.00404 * 2 1 4 4 N 1.46898 * 109.47267 * 124.27314 * 3 2 1 5 5 C 1.46899 * 111.00075 * 300.02150 * 4 3 2 6 6 C 1.50697 * 109.47448 * 287.52730 * 5 4 3 7 7 H 1.08001 * 119.99752 * 4.80964 * 6 5 4 8 8 C 1.37880 * 120.00177 * 184.80725 * 6 5 4 9 9 N 1.31513 * 119.99907 * 179.97438 * 8 6 5 10 10 Si 1.86795 * 119.99773 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47446 * 89.99841 * 10 8 6 12 12 H 1.48499 * 109.47362 * 209.99787 * 10 8 6 13 13 H 1.48504 * 109.47371 * 329.99990 * 10 8 6 14 14 C 1.46898 * 111.00010 * 63.97897 * 4 3 2 15 15 N 1.46498 * 109.47260 * 66.04605 * 14 4 3 16 16 N 1.40157 * 126.24385 * 270.24977 * 15 14 4 17 17 C 1.30339 * 108.04544 * 180.14336 * 16 15 14 18 18 C 1.47970 * 125.73576 * 179.90865 * 17 16 15 19 19 C 1.39927 * 120.92351 * 160.01262 * 18 17 16 20 20 C 1.37948 * 119.00279 * 179.70119 * 19 18 17 21 21 N 1.31944 * 120.89403 * 0.30197 * 20 19 18 22 22 C 1.31941 * 122.04713 * 359.97438 * 21 20 19 23 23 C 1.37939 * 120.89560 * 0.02562 * 22 21 20 24 24 N 1.38125 * 108.53316 * 359.64661 * 17 16 15 25 25 C 1.46506 * 125.87146 * 180.22366 * 24 17 16 26 26 C 1.34791 * 108.26959 * 0.22655 * 24 17 16 27 27 S 1.71193 * 126.18550 * 180.02562 * 26 24 17 28 28 H 1.08000 * 120.00223 * 180.02562 * 1 2 3 29 29 H 1.07997 * 119.99498 * 359.97438 * 1 2 3 30 30 H 1.08005 * 119.99730 * 180.02562 * 2 1 3 31 31 H 1.09005 * 109.47243 * 4.27249 * 3 2 1 32 32 H 1.08998 * 109.47458 * 244.27538 * 3 2 1 33 33 H 1.09002 * 109.46585 * 47.52674 * 5 4 3 34 34 H 1.08999 * 109.47135 * 167.51971 * 5 4 3 35 35 H 0.97001 * 119.99678 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.46814 * 306.04689 * 14 4 3 37 37 H 1.08997 * 109.47292 * 186.04935 * 14 4 3 38 38 H 1.07996 * 120.50574 * 359.97389 * 19 18 17 39 39 H 1.07992 * 119.55960 * 180.27328 * 20 19 18 40 40 H 1.07998 * 119.55103 * 180.02562 * 22 21 20 41 41 H 1.08006 * 120.49714 * 179.97438 * 23 22 21 42 42 H 1.09000 * 109.46993 * 83.63456 * 25 24 17 43 43 H 1.08997 * 109.47254 * 203.64166 * 25 24 17 44 44 H 1.08998 * 109.46896 * 323.64234 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9839 1.3390 1.1445 5 6 2.2520 1.2173 2.4123 6 6 1.5100 2.4994 2.6892 7 1 1.5120 3.2934 1.9571 8 6 0.8285 2.6588 3.8772 9 7 0.1814 3.7779 4.1190 10 14 0.8255 1.2857 5.1437 11 1 1.9753 1.4614 6.0670 12 1 -0.4414 1.3284 5.9172 13 1 0.9404 -0.0243 4.4538 14 6 4.0098 0.2943 1.0263 15 7 4.8715 0.5837 -0.1225 16 7 4.6685 0.1515 -1.4402 17 6 5.6471 0.6081 -2.1701 18 6 5.8203 0.3827 -3.6223 19 6 6.6359 1.2230 -4.3882 20 6 6.7740 0.9727 -5.7377 21 7 6.1453 -0.0381 -6.3070 22 6 5.3629 -0.8507 -5.6228 23 6 5.1683 -0.6734 -4.2688 24 7 6.4922 1.3428 -1.3615 25 6 7.7116 2.0302 -1.7940 26 6 6.0025 1.3187 -0.1059 27 16 6.6909 2.0831 1.2624 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5399 0.9353 0.0004 30 1 1.8500 -0.9354 -0.0004 31 1 1.3578 2.1321 0.0766 32 1 2.6316 1.3966 -0.9258 33 1 1.5413 0.3937 2.3439 34 1 2.9563 1.0231 3.2212 35 1 -0.2978 3.8901 4.9549 36 1 3.5283 -0.6733 0.8848 37 1 4.6113 0.2713 1.9350 38 1 7.1531 2.0524 -3.9290 39 1 7.4048 1.6128 -6.3365 40 1 4.8680 -1.6659 -6.1298 41 1 4.5261 -1.3423 -3.7151 42 1 7.4524 3.0063 -2.2040 43 1 8.3778 2.1595 -0.9410 44 1 8.2117 1.4361 -2.5588 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793560029.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:59 Heat of formation + Delta-G solvation = 183.567435 kcal Electronic energy + Delta-G solvation = -27619.692931 eV Core-core repulsion = 23895.330238 eV Total energy + Delta-G solvation = -3724.362693 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.132 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.85273 -40.54858 -37.97702 -35.55796 -34.27017 -32.93030 -32.55280 -31.85919 -31.28430 -28.78699 -27.70273 -26.70892 -24.99463 -24.34539 -23.85848 -22.52496 -21.70135 -21.02669 -19.34707 -18.31227 -17.31812 -17.16149 -16.99707 -16.73485 -16.43248 -16.06490 -15.79817 -15.20343 -14.95479 -14.51757 -14.46293 -14.32076 -14.19527 -14.06378 -13.57994 -13.13999 -12.84239 -12.56579 -12.43649 -12.07336 -11.80220 -11.77242 -11.50410 -11.22768 -11.18560 -10.94438 -10.86008 -10.55224 -10.49551 -10.14877 -10.04959 -9.91222 -9.79757 -9.41354 -8.96780 -8.56117 -7.74877 -7.51557 -7.39248 -6.05048 -4.02419 0.02216 0.50819 1.06677 1.31356 1.71207 2.10082 2.40359 2.65159 3.21191 3.29721 3.35842 3.37313 3.59492 3.86496 3.87262 4.23879 4.27491 4.41482 4.42070 4.50923 4.59752 4.74305 4.89741 4.95451 5.11917 5.18194 5.19514 5.25908 5.30564 5.34669 5.42942 5.53879 5.60091 5.84585 5.88290 5.98712 6.21231 6.22713 6.41938 6.63504 6.81417 6.95912 6.98500 7.12166 7.33869 7.42478 7.70015 7.77182 8.59278 9.02669 9.55017 11.08087 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.014721 B = 0.003156 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.647302 B = 8871.059989 C =10114.984322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.186 4.186 3 C 0.088 3.912 4 N -0.523 5.523 5 C 0.171 3.829 6 C -0.502 4.502 7 H 0.080 0.920 8 C 0.072 3.928 9 N -0.898 5.898 10 Si 0.872 3.128 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.268 1.268 14 C 0.301 3.699 15 N -0.355 5.355 16 N -0.249 5.249 17 C 0.293 3.707 18 C 0.020 3.980 19 C -0.157 4.157 20 C 0.108 3.892 21 N -0.473 5.473 22 C 0.107 3.893 23 C -0.125 4.125 24 N -0.496 5.496 25 C 0.074 3.926 26 C 0.472 3.528 27 S -0.557 6.557 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.004 0.996 34 H 0.029 0.971 35 H 0.264 0.736 36 H 0.073 0.927 37 H 0.125 0.875 38 H 0.147 0.853 39 H 0.167 0.833 40 H 0.167 0.833 41 H 0.150 0.850 42 H 0.089 0.911 43 H 0.115 0.885 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.220 -10.718 -21.165 27.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.206 4.206 3 C -0.039 4.039 4 N -0.247 5.247 5 C 0.045 3.955 6 C -0.541 4.541 7 H 0.098 0.902 8 C -0.130 4.130 9 N -0.536 5.536 10 Si 0.699 3.301 11 H -0.199 1.199 12 H -0.212 1.212 13 H -0.193 1.193 14 C 0.091 3.909 15 N -0.149 5.149 16 N -0.071 5.071 17 C 0.016 3.984 18 C 0.009 3.991 19 C -0.178 4.178 20 C -0.049 4.049 21 N -0.182 5.182 22 C -0.049 4.049 23 C -0.147 4.147 24 N -0.198 5.198 25 C -0.067 4.067 26 C 0.114 3.886 27 S -0.428 6.428 28 H 0.107 0.893 29 H 0.120 0.880 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.080 0.920 33 H 0.021 0.979 34 H 0.047 0.953 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.143 0.857 38 H 0.165 0.835 39 H 0.184 0.816 40 H 0.184 0.816 41 H 0.167 0.833 42 H 0.107 0.893 43 H 0.134 0.866 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 12.924 -10.411 -20.912 26.697 hybrid contribution -0.436 -1.172 1.085 1.656 sum 12.488 -11.582 -19.827 26.138 Atomic orbital electron populations 1.23802 0.95930 1.01575 0.99676 1.23450 0.96788 0.99328 1.00995 1.21315 0.94667 0.95155 0.92808 1.62127 1.14050 1.43584 1.04903 1.20182 0.92263 0.98495 0.84511 1.20836 1.29473 0.99913 1.03858 0.90242 1.24827 0.95103 0.95378 0.97679 1.69879 1.33628 1.25028 1.25103 0.86919 0.77836 0.83057 0.82308 1.19908 1.21197 1.19311 1.22507 0.90074 0.94584 0.83731 1.49706 1.19320 1.39860 1.05994 1.77457 1.18838 1.20944 0.89832 1.22263 0.88800 0.94315 0.93027 1.17763 0.98523 0.96872 0.85966 1.22527 0.99228 1.00201 0.95880 1.22775 0.96286 0.94201 0.91629 1.67696 1.06445 1.03785 1.40268 1.22832 0.94211 0.97361 0.90527 1.22292 0.98954 0.97136 0.96338 1.46093 1.23898 1.43612 1.06173 1.22425 0.83595 0.97157 1.03560 1.23909 0.86702 0.88112 0.89914 1.93485 1.69273 1.57002 1.23076 0.89349 0.88018 0.88582 0.88835 0.92022 0.97876 0.95305 0.92609 0.90923 0.85696 0.83508 0.81635 0.81576 0.83266 0.89296 0.86623 0.88861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 14.32 29.01 0.42 -2.33 16 2 C -0.19 -3.08 7.42 -36.03 -0.27 -3.35 16 3 C 0.09 1.66 5.56 -4.98 -0.03 1.63 16 4 N -0.52 -10.77 4.79 -241.44 -1.16 -11.92 16 5 C 0.17 4.01 3.66 -4.98 -0.02 3.99 16 6 C -0.50 -14.10 9.23 -34.44 -0.32 -14.42 16 7 H 0.08 2.47 7.62 -52.49 -0.40 2.07 16 8 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 9 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 10 Si 0.87 21.35 27.38 -169.99 -4.65 16.70 16 11 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 13 H -0.27 -6.23 6.68 56.52 0.38 -5.85 16 14 C 0.30 5.18 5.76 -63.32 -0.36 4.82 16 15 N -0.36 -5.67 3.34 -65.02 -0.22 -5.89 16 16 N -0.25 -3.38 11.30 32.58 0.37 -3.01 16 17 C 0.29 3.29 7.68 -153.95 -1.18 2.10 16 18 C 0.02 0.16 5.88 -104.64 -0.62 -0.45 16 19 C -0.16 -0.93 8.68 -39.06 -0.34 -1.27 16 20 C 0.11 0.62 11.17 -17.61 -0.20 0.42 16 21 N -0.47 -3.53 10.35 -13.35 -0.14 -3.67 16 22 C 0.11 0.68 11.17 -17.61 -0.20 0.49 16 23 C -0.13 -0.90 9.79 -39.05 -0.38 -1.28 16 24 N -0.50 -5.87 3.16 -122.56 -0.39 -6.26 16 25 C 0.07 0.54 9.15 59.85 0.55 1.09 16 26 C 0.47 7.60 7.85 -86.80 -0.68 6.92 16 27 S -0.56 -10.90 29.45 -107.50 -3.17 -14.07 16 28 H 0.09 1.22 8.06 -52.49 -0.42 0.80 16 29 H 0.10 1.72 7.84 -52.49 -0.41 1.31 16 30 H 0.10 1.46 6.79 -52.48 -0.36 1.10 16 31 H 0.09 1.98 6.87 -51.93 -0.36 1.62 16 32 H 0.06 1.11 6.62 -51.93 -0.34 0.76 16 33 H 0.00 0.08 6.09 -51.93 -0.32 -0.23 16 34 H 0.03 0.69 6.96 -51.93 -0.36 0.33 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.07 1.12 6.33 -51.93 -0.33 0.79 16 37 H 0.13 2.23 7.39 -51.93 -0.38 1.84 16 38 H 0.15 0.58 5.00 -52.49 -0.26 0.32 16 39 H 0.17 0.47 8.06 -52.49 -0.42 0.04 16 40 H 0.17 0.62 8.06 -52.49 -0.42 0.20 16 41 H 0.15 0.98 8.03 -52.48 -0.42 0.56 16 42 H 0.09 0.51 7.65 -51.93 -0.40 0.12 16 43 H 0.12 0.96 7.44 -51.93 -0.39 0.58 16 44 H 0.09 0.39 6.51 -51.93 -0.34 0.05 16 LS Contribution 377.04 15.07 5.68 5.68 Total: -1.00 -35.91 377.04 -12.11 -48.02 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -5.49 Total: 0.80 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -3.72 Total: 0.32 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: -0.76 Total: -57.46 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.65 Total: 16.70 kcal Atomic # 16 Polarization: -10.90 SS G_CDS: -3.17 Total: -14.07 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.91 -12.11 -48.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793560029.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.585 kcal (2) G-P(sol) polarization free energy of solvation -35.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 195.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 183.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds