Wall clock time and date at job start Wed Apr 1 2020 03:23:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.30999 * 1
3 3 C 1.50704 * 119.99832 * 2 1
4 4 N 1.46895 * 109.47008 * 124.85287 * 3 2 1
5 5 C 1.46902 * 111.00089 * 302.45678 * 4 3 2
6 6 C 1.50697 * 109.47216 * 287.48418 * 5 4 3
7 7 H 1.08005 * 120.00282 * 4.59864 * 6 5 4
8 8 C 1.37876 * 119.99664 * 184.60065 * 6 5 4
9 9 N 1.31512 * 120.00579 * 359.97438 * 8 6 5
10 10 Si 1.86808 * 119.99829 * 179.97438 * 8 6 5
11 11 H 1.48499 * 109.46926 * 89.99718 * 10 8 6
12 12 H 1.48504 * 109.46859 * 209.99976 * 10 8 6
13 13 H 1.48501 * 109.46874 * 329.99784 * 10 8 6
14 14 C 1.46900 * 111.00145 * 66.41535 * 4 3 2
15 15 N 1.46494 * 109.47080 * 66.04234 * 14 4 3
16 16 N 1.40163 * 126.24142 * 90.02615 * 15 14 4
17 17 C 1.30358 * 108.03893 * 179.97438 * 16 15 14
18 18 C 1.47976 * 125.73365 * 180.02562 * 17 16 15
19 19 C 1.39932 * 120.55624 * 159.91140 * 18 17 16
20 20 C 1.38376 * 118.29750 * 179.72352 * 19 18 17
21 21 C 1.38337 * 119.29806 * 0.02562 * 20 19 18
22 22 N 1.31902 * 121.06605 * 359.97438 * 21 20 19
23 23 C 1.31713 * 121.87249 * 0.02562 * 22 21 20
24 24 N 1.38094 * 108.53455 * 0.26292 * 17 16 15
25 25 C 1.46500 * 125.86000 * 179.70004 * 24 17 16
26 26 C 1.34786 * 108.27623 * 359.56660 * 24 17 16
27 27 S 1.71203 * 126.18362 * 180.16228 * 26 24 17
28 28 H 1.08000 * 120.00453 * 0.02562 * 1 2 3
29 29 H 1.08004 * 119.99586 * 179.97438 * 1 2 3
30 30 H 1.07999 * 120.00395 * 180.02562 * 2 1 3
31 31 H 1.09000 * 109.46643 * 4.85155 * 3 2 1
32 32 H 1.09001 * 109.47195 * 244.85633 * 3 2 1
33 33 H 1.09005 * 109.46778 * 47.48585 * 5 4 3
34 34 H 1.08995 * 109.46899 * 167.48281 * 5 4 3
35 35 H 0.97000 * 120.00647 * 180.02562 * 9 8 6
36 36 H 1.09000 * 109.46771 * 306.04308 * 14 4 3
37 37 H 1.08998 * 109.47143 * 186.04233 * 14 4 3
38 38 H 1.08000 * 120.84812 * 359.74824 * 19 18 17
39 39 H 1.07996 * 120.34831 * 180.02562 * 20 19 18
40 40 H 1.08002 * 119.46166 * 179.97438 * 21 20 19
41 41 H 1.08003 * 119.71092 * 179.97438 * 23 22 21
42 42 H 1.09000 * 109.47105 * 83.71717 * 25 24 17
43 43 H 1.09003 * 109.47219 * 203.71418 * 25 24 17
44 44 H 1.09000 * 109.47274 * 323.71129 * 25 24 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3052 0.0000
4 7 2.9937 1.3335 1.1365
5 6 2.2791 1.1474 2.4065
6 6 1.4991 2.3951 2.7315
7 1 1.4708 3.2132 2.0269
8 6 0.8215 2.4923 3.9283
9 7 0.8555 1.4960 4.7861
10 14 -0.1449 4.0392 4.3316
11 1 -1.5385 3.8946 3.8394
12 1 -0.1581 4.2453 5.8022
13 1 0.4937 5.2074 3.6737
14 6 4.0522 0.3277 0.9757
15 7 4.8921 0.6818 -0.1711
16 7 6.0419 1.4828 -0.1402
17 6 6.5092 1.5653 -1.3544
18 6 7.7153 2.3167 -1.7669
19 6 8.3634 2.0167 -2.9703
20 6 9.4839 2.7526 -3.3131
21 6 9.9239 3.7516 -2.4633
22 7 9.2925 4.0122 -1.3349
23 6 8.2221 3.3394 -0.9654
24 7 5.6864 0.8381 -2.1917
25 6 5.8577 0.6801 -3.6381
26 6 4.7005 0.2962 -1.4494
27 16 3.4301 -0.6962 -2.0259
28 1 -0.5401 0.9353 -0.0004
29 1 -0.5400 -0.9354 -0.0004
30 1 1.8501 -0.9353 -0.0004
31 1 1.3583 2.1317 0.0869
32 1 2.6233 1.4015 -0.9303
33 1 1.5947 0.3036 2.3180
34 1 2.9976 0.9505 3.2021
35 1 0.3785 1.5642 5.6280
36 1 3.6014 -0.6504 0.8077
37 1 4.6634 0.2960 1.8776
38 1 7.9981 1.2311 -3.6151
39 1 10.0095 2.5493 -4.2344
40 1 10.7984 4.3273 -2.7280
41 1 7.7326 3.5819 -0.0337
42 1 6.5652 -0.1255 -3.8343
43 1 4.8971 0.4390 -4.0935
44 1 6.2380 1.6092 -4.0626
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000793561762.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:23:57
Heat of formation + Delta-G solvation = 179.887507 kcal
Electronic energy + Delta-G solvation = -27616.497618 eV
Core-core repulsion = 23891.975351 eV
Total energy + Delta-G solvation = -3724.522266 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 345.132 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-42.82533 -40.53604 -37.78000 -35.48720 -33.92400 -32.93735 -32.76943 -31.99071
-30.79247 -28.60516 -27.24481 -26.38208 -24.96082 -24.37535 -23.72123 -22.61553
-21.64862 -21.01160 -19.13967 -18.00694 -17.69122 -17.12776 -16.97703 -16.55390
-16.28807 -16.04329 -15.39892 -15.11388 -14.92269 -14.45308 -14.39080 -14.25952
-14.08217 -13.90988 -13.42713 -12.98895 -12.52992 -12.49362 -12.18812 -12.08411
-11.67644 -11.53913 -11.31262 -11.24673 -10.99615 -10.87168 -10.66514 -10.48882
-10.40332 -10.34891 -10.07881 -9.95067 -9.50818 -9.36493 -8.52177 -8.38742
-7.58293 -7.52873 -7.26452 -6.03846 -4.04413 0.04096 0.62281 1.08381
1.29258 1.73482 2.17679 2.34006 3.20187 3.23679 3.32750 3.38713
3.42902 3.64718 3.87838 4.06834 4.15170 4.22465 4.34436 4.41650
4.56815 4.68547 4.78455 4.87467 5.00769 5.14952 5.24670 5.33250
5.35863 5.41521 5.54136 5.56577 5.77747 5.92419 6.01104 6.01783
6.20956 6.33883 6.63574 6.74391 6.99342 7.09349 7.25166 7.36714
7.48885 7.60594 7.70946 7.93292 8.08386 8.40673 9.00160 9.58768
11.06920
Molecular weight = 345.13amu
Principal moments of inertia in cm(-1)
A = 0.012145 B = 0.003234 C = 0.002695
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2304.962226 B = 8655.338072 C =10388.108062
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.145 4.145
3 C 0.088 3.912
4 N -0.539 5.539
5 C 0.198 3.802
6 C -0.501 4.501
7 H 0.061 0.939
8 C 0.058 3.942
9 N -0.897 5.897
10 Si 0.897 3.103
11 H -0.281 1.281
12 H -0.287 1.287
13 H -0.274 1.274
14 C 0.297 3.703
15 N -0.346 5.346
16 N -0.240 5.240
17 C 0.297 3.703
18 C -0.082 4.082
19 C -0.057 4.057
20 C -0.170 4.170
21 C 0.119 3.881
22 N -0.477 5.477
23 C 0.157 3.843
24 N -0.495 5.495
25 C 0.075 3.925
26 C 0.459 3.541
27 S -0.574 6.574
28 H 0.090 0.910
29 H 0.083 0.917
30 H 0.110 0.890
31 H 0.080 0.920
32 H 0.063 0.937
33 H 0.011 0.989
34 H 0.033 0.967
35 H 0.262 0.738
36 H 0.091 0.909
37 H 0.112 0.888
38 H 0.145 0.855
39 H 0.146 0.854
40 H 0.164 0.836
41 H 0.173 0.827
42 H 0.086 0.914
43 H 0.115 0.885
44 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.823 -0.020 -18.687 26.524
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.236 4.236
2 C -0.165 4.165
3 C -0.040 4.040
4 N -0.263 5.263
5 C 0.074 3.926
6 C -0.539 4.539
7 H 0.079 0.921
8 C -0.143 4.143
9 N -0.537 5.537
10 Si 0.725 3.275
11 H -0.207 1.207
12 H -0.212 1.212
13 H -0.199 1.199
14 C 0.087 3.913
15 N -0.138 5.138
16 N -0.061 5.061
17 C 0.020 3.980
18 C -0.087 4.087
19 C -0.085 4.085
20 C -0.190 4.190
21 C -0.038 4.038
22 N -0.185 5.185
23 C -0.003 4.003
24 N -0.196 5.196
25 C -0.067 4.067
26 C 0.099 3.901
27 S -0.445 6.445
28 H 0.108 0.892
29 H 0.102 0.898
30 H 0.128 0.872
31 H 0.098 0.902
32 H 0.081 0.919
33 H 0.029 0.971
34 H 0.051 0.949
35 H 0.071 0.929
36 H 0.108 0.892
37 H 0.130 0.870
38 H 0.163 0.837
39 H 0.164 0.836
40 H 0.181 0.819
41 H 0.190 0.810
42 H 0.105 0.895
43 H 0.133 0.867
44 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges 18.586 0.716 -17.161 25.307
hybrid contribution -0.766 -0.393 -0.693 1.105
sum 17.820 0.323 -17.854 25.227
Atomic orbital electron populations
1.23535 0.96034 1.00589 1.03465 1.23398 0.96232 0.99544 0.97318
1.21387 0.94587 0.95349 0.92685 1.62422 1.12850 1.45185 1.05879
1.19790 0.92569 0.97740 0.82545 1.20995 1.29176 1.01223 1.02545
0.92054 1.24923 0.96739 0.96572 0.96089 1.69937 1.43113 1.31301
1.09319 0.86507 0.80264 0.83343 0.77377 1.20683 1.21249 1.19855
1.22542 0.89648 0.95335 0.83731 1.49866 1.19753 1.36847 1.07355
1.77602 0.99660 1.12314 1.16490 1.22271 0.93804 0.95847 0.86108
1.18496 0.93385 0.98979 0.97879 1.21926 0.94114 0.98185 0.94285
1.22120 0.97345 0.97503 1.02042 1.23114 0.97817 0.93906 0.88997
1.67879 1.07468 1.26519 1.16637 1.23117 0.90596 0.88307 0.98258
1.46080 1.21665 1.41343 1.10548 1.22395 1.06577 1.03372 0.74335
1.23972 0.90563 0.91239 0.84326 1.93440 1.26432 1.44051 1.80596
0.89199 0.89847 0.87178 0.90191 0.91890 0.97079 0.94941 0.92867
0.89166 0.86991 0.83714 0.83619 0.81867 0.81006 0.89529 0.86655
0.88909
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -3.90 14.32 29.01 0.42 -3.48 16
2 C -0.14 -2.92 5.70 -36.02 -0.21 -3.12 16
3 C 0.09 1.82 5.14 -4.98 -0.03 1.80 16
4 N -0.54 -11.54 4.79 -241.44 -1.16 -12.70 16
5 C 0.20 4.96 4.58 -4.98 -0.02 4.94 16
6 C -0.50 -13.86 8.71 -34.44 -0.30 -14.16 16
7 H 0.06 1.72 7.38 -52.48 -0.39 1.33 16
8 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16
9 N -0.90 -26.25 13.29 55.43 0.74 -25.51 16
10 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16
11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16
12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16
13 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16
14 C 0.30 5.40 5.84 -63.32 -0.37 5.03 16
15 N -0.35 -5.73 3.58 -65.02 -0.23 -5.97 16
16 N -0.24 -3.60 12.34 32.58 0.40 -3.20 16
17 C 0.30 3.53 7.66 -153.96 -1.18 2.35 16
18 C -0.08 -0.73 5.86 -104.81 -0.61 -1.35 16
19 C -0.06 -0.33 8.68 -38.90 -0.34 -0.67 16
20 C -0.17 -0.74 10.10 -39.49 -0.40 -1.14 16
21 C 0.12 0.70 11.17 -17.48 -0.20 0.50 16
22 N -0.48 -4.35 10.35 -12.93 -0.13 -4.49 16
23 C 0.16 1.51 10.86 -17.14 -0.19 1.32 16
24 N -0.50 -5.83 3.16 -122.56 -0.39 -6.21 16
25 C 0.07 0.53 9.14 59.85 0.55 1.07 16
26 C 0.46 7.17 6.61 -86.81 -0.57 6.60 16
27 S -0.57 -10.17 24.75 -107.50 -2.66 -12.83 16
28 H 0.09 1.78 7.84 -52.49 -0.41 1.37 16
29 H 0.08 1.51 8.06 -52.48 -0.42 1.08 16
30 H 0.11 2.23 5.69 -52.49 -0.30 1.93 16
31 H 0.08 1.80 6.94 -51.93 -0.36 1.44 16
32 H 0.06 1.29 5.08 -51.93 -0.26 1.02 16
33 H 0.01 0.30 6.60 -51.93 -0.34 -0.04 16
34 H 0.03 0.86 7.80 -51.93 -0.40 0.45 16
35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16
36 H 0.09 1.64 5.98 -51.93 -0.31 1.33 16
37 H 0.11 1.94 7.86 -51.93 -0.41 1.53 16
38 H 0.15 0.50 5.04 -52.49 -0.26 0.24 16
39 H 0.15 0.18 8.06 -52.49 -0.42 -0.25 16
40 H 0.16 0.48 8.06 -52.49 -0.42 0.05 16
41 H 0.17 1.72 7.97 -52.48 -0.42 1.30 16
42 H 0.09 0.41 7.62 -51.93 -0.40 0.01 16
43 H 0.12 0.95 7.44 -51.93 -0.39 0.56 16
44 H 0.09 0.41 6.54 -51.93 -0.34 0.07 16
LS Contribution 371.19 15.07 5.59 5.59
Total: -1.00 -34.17 371.19 -11.80 -45.97
By element:
Atomic # 1 Polarization: 6.81 SS G_CDS: -5.40 Total: 1.42 kcal
Atomic # 6 Polarization: 4.77 SS G_CDS: -3.54 Total: 1.23 kcal
Atomic # 7 Polarization: -57.31 SS G_CDS: -0.77 Total: -58.08 kcal
Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal
Atomic # 16 Polarization: -10.17 SS G_CDS: -2.66 Total: -12.83 kcal
Total LS contribution 5.59 Total: 5.59 kcal
Total: -34.17 -11.80 -45.97 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000793561762.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 225.853 kcal
(2) G-P(sol) polarization free energy of solvation -34.167 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 191.686 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.799 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.965 kcal
(6) G-S(sol) free energy of system = (1) + (5) 179.888 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds