Wall clock time and date at job start Wed Apr 1 2020 03:23:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.30999 * 1
3 3 C 1.50704 * 119.99832 * 2 1
4 4 N 1.46895 * 109.47008 * 124.85287 * 3 2 1
5 5 C 1.46902 * 111.00089 * 302.45678 * 4 3 2
6 6 C 1.50697 * 109.47216 * 287.48418 * 5 4 3
7 7 H 1.08005 * 120.00282 * 4.59864 * 6 5 4
8 8 C 1.37876 * 119.99664 * 184.60065 * 6 5 4
9 9 N 1.31512 * 120.00579 * 359.97438 * 8 6 5
10 10 Si 1.86808 * 119.99829 * 179.97438 * 8 6 5
11 11 H 1.48499 * 109.46926 * 89.99718 * 10 8 6
12 12 H 1.48504 * 109.46859 * 209.99976 * 10 8 6
13 13 H 1.48501 * 109.46874 * 329.99784 * 10 8 6
14 14 C 1.46900 * 111.00145 * 66.41535 * 4 3 2
15 15 N 1.46494 * 109.47080 * 66.04234 * 14 4 3
16 16 N 1.40163 * 126.24142 * 90.02615 * 15 14 4
17 17 C 1.30358 * 108.03893 * 179.97438 * 16 15 14
18 18 C 1.47976 * 125.73365 * 180.02562 * 17 16 15
19 19 C 1.39932 * 120.55624 * 159.91140 * 18 17 16
20 20 C 1.38376 * 118.29750 * 179.72352 * 19 18 17
21 21 C 1.38337 * 119.29806 * 0.02562 * 20 19 18
22 22 N 1.31902 * 121.06605 * 359.97438 * 21 20 19
23 23 C 1.31713 * 121.87249 * 0.02562 * 22 21 20
24 24 N 1.38094 * 108.53455 * 0.26292 * 17 16 15
25 25 C 1.46500 * 125.86000 * 179.70004 * 24 17 16
26 26 C 1.34786 * 108.27623 * 359.56660 * 24 17 16
27 27 S 1.71203 * 126.18362 * 180.16228 * 26 24 17
28 28 H 1.08000 * 120.00453 * 0.02562 * 1 2 3
29 29 H 1.08004 * 119.99586 * 179.97438 * 1 2 3
30 30 H 1.07999 * 120.00395 * 180.02562 * 2 1 3
31 31 H 1.09000 * 109.46643 * 4.85155 * 3 2 1
32 32 H 1.09001 * 109.47195 * 244.85633 * 3 2 1
33 33 H 1.09005 * 109.46778 * 47.48585 * 5 4 3
34 34 H 1.08995 * 109.46899 * 167.48281 * 5 4 3
35 35 H 0.97000 * 120.00647 * 180.02562 * 9 8 6
36 36 H 1.09000 * 109.46771 * 306.04308 * 14 4 3
37 37 H 1.08998 * 109.47143 * 186.04233 * 14 4 3
38 38 H 1.08000 * 120.84812 * 359.74824 * 19 18 17
39 39 H 1.07996 * 120.34831 * 180.02562 * 20 19 18
40 40 H 1.08002 * 119.46166 * 179.97438 * 21 20 19
41 41 H 1.08003 * 119.71092 * 179.97438 * 23 22 21
42 42 H 1.09000 * 109.47105 * 83.71717 * 25 24 17
43 43 H 1.09003 * 109.47219 * 203.71418 * 25 24 17
44 44 H 1.09000 * 109.47274 * 323.71129 * 25 24 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3052 0.0000
4 7 2.9937 1.3335 1.1365
5 6 2.2791 1.1474 2.4065
6 6 1.4991 2.3951 2.7315
7 1 1.4708 3.2132 2.0269
8 6 0.8215 2.4923 3.9283
9 7 0.8555 1.4960 4.7861
10 14 -0.1449 4.0392 4.3316
11 1 -1.5385 3.8946 3.8394
12 1 -0.1581 4.2453 5.8022
13 1 0.4937 5.2074 3.6737
14 6 4.0522 0.3277 0.9757
15 7 4.8921 0.6818 -0.1711
16 7 6.0419 1.4828 -0.1402
17 6 6.5092 1.5653 -1.3544
18 6 7.7153 2.3167 -1.7669
19 6 8.3634 2.0167 -2.9703
20 6 9.4839 2.7526 -3.3131
21 6 9.9239 3.7516 -2.4633
22 7 9.2925 4.0122 -1.3349
23 6 8.2221 3.3394 -0.9654
24 7 5.6864 0.8381 -2.1917
25 6 5.8577 0.6801 -3.6381
26 6 4.7005 0.2962 -1.4494
27 16 3.4301 -0.6962 -2.0259
28 1 -0.5401 0.9353 -0.0004
29 1 -0.5400 -0.9354 -0.0004
30 1 1.8501 -0.9353 -0.0004
31 1 1.3583 2.1317 0.0869
32 1 2.6233 1.4015 -0.9303
33 1 1.5947 0.3036 2.3180
34 1 2.9976 0.9505 3.2021
35 1 0.3785 1.5642 5.6280
36 1 3.6014 -0.6504 0.8077
37 1 4.6634 0.2960 1.8776
38 1 7.9981 1.2311 -3.6151
39 1 10.0095 2.5493 -4.2344
40 1 10.7984 4.3273 -2.7280
41 1 7.7326 3.5819 -0.0337
42 1 6.5652 -0.1255 -3.8343
43 1 4.8971 0.4390 -4.0935
44 1 6.2380 1.6092 -4.0626
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000793561762.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:23:56
Heat of formation + Delta-G solvation = 158.837318 kcal
Electronic energy + Delta-G solvation = -27617.410422 eV
Core-core repulsion = 23891.975351 eV
Total energy + Delta-G solvation = -3725.435071 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 345.132 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-43.91369 -41.11812 -39.38773 -36.62026 -34.93638 -34.72546 -33.85658 -33.19296
-31.82660 -29.73074 -28.95377 -27.70792 -26.21300 -25.10132 -24.94868 -23.82402
-22.83741 -22.44873 -20.70979 -19.15417 -18.41986 -18.28785 -18.14372 -17.90087
-17.38598 -17.03823 -16.78757 -16.55509 -16.33813 -16.08560 -15.53527 -15.04139
-14.94745 -14.61707 -14.37441 -14.36556 -14.05274 -13.73720 -13.38995 -13.21256
-13.02497 -12.90305 -12.86237 -12.74717 -12.56173 -12.50498 -12.27305 -12.18011
-11.99873 -11.62664 -11.37818 -10.95783 -10.61920 -10.60584 -10.17964 -10.09143
-9.28274 -8.91393 -8.65511 -8.19425 -6.27490 -0.61950 -0.14442 0.11925
0.14439 0.87807 0.98236 1.29705 1.40660 1.40906 1.52167 1.58706
2.39925 2.65249 2.78024 3.03383 3.11185 3.20941 3.47002 3.49622
3.67680 3.77846 3.89720 4.04144 4.09068 4.15434 4.22109 4.31470
4.35640 4.40515 4.56139 4.62401 4.71499 4.80218 4.90430 4.92953
5.01250 5.04976 5.14802 5.20609 5.28524 5.54744 5.60339 5.84691
5.87043 5.94695 6.00420 6.22672 6.39424 6.82918 6.83164 7.39964
8.91075
Molecular weight = 345.13amu
Principal moments of inertia in cm(-1)
A = 0.012145 B = 0.003234 C = 0.002695
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2304.962226 B = 8655.338072 C =10388.108062
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.147 4.147
3 C 0.101 3.899
4 N -0.546 5.546
5 C 0.216 3.784
6 C -0.515 4.515
7 H 0.053 0.947
8 C 0.010 3.990
9 N -0.928 5.928
10 Si 0.961 3.039
11 H -0.274 1.274
12 H -0.280 1.280
13 H -0.270 1.270
14 C 0.306 3.694
15 N -0.357 5.357
16 N -0.280 5.280
17 C 0.323 3.677
18 C -0.102 4.102
19 C -0.047 4.047
20 C -0.152 4.152
21 C 0.118 3.882
22 N -0.508 5.508
23 C 0.142 3.858
24 N -0.482 5.482
25 C 0.061 3.939
26 C 0.461 3.539
27 S -0.625 6.625
28 H 0.086 0.914
29 H 0.101 0.899
30 H 0.110 0.890
31 H 0.058 0.942
32 H 0.068 0.932
33 H -0.007 1.007
34 H 0.014 0.986
35 H 0.265 0.735
36 H 0.089 0.911
37 H 0.115 0.885
38 H 0.174 0.826
39 H 0.190 0.810
40 H 0.195 0.805
41 H 0.152 0.848
42 H 0.119 0.881
43 H 0.104 0.896
44 H 0.127 0.873
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 21.131 0.844 -21.475 30.139
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.238 4.238
2 C -0.167 4.167
3 C -0.027 4.027
4 N -0.271 5.271
5 C 0.091 3.909
6 C -0.554 4.554
7 H 0.071 0.929
8 C -0.188 4.188
9 N -0.569 5.569
10 Si 0.787 3.213
11 H -0.200 1.200
12 H -0.205 1.205
13 H -0.194 1.194
14 C 0.096 3.904
15 N -0.148 5.148
16 N -0.101 5.101
17 C 0.045 3.955
18 C -0.108 4.108
19 C -0.074 4.074
20 C -0.171 4.171
21 C -0.038 4.038
22 N -0.216 5.216
23 C -0.017 4.017
24 N -0.181 5.181
25 C -0.078 4.078
26 C 0.097 3.903
27 S -0.497 6.497
28 H 0.104 0.896
29 H 0.119 0.881
30 H 0.128 0.872
31 H 0.077 0.923
32 H 0.086 0.914
33 H 0.010 0.990
34 H 0.032 0.968
35 H 0.074 0.926
36 H 0.106 0.894
37 H 0.133 0.867
38 H 0.191 0.809
39 H 0.208 0.792
40 H 0.212 0.788
41 H 0.170 0.830
42 H 0.137 0.863
43 H 0.123 0.877
44 H 0.145 0.855
Dipole moment (debyes) X Y Z Total
from point charges 20.938 1.591 -20.004 29.002
hybrid contribution -1.199 -0.579 0.008 1.332
sum 19.739 1.012 -19.997 28.116
Atomic orbital electron populations
1.23688 0.95981 1.01284 1.02832 1.23324 0.96405 0.99130 0.97884
1.21203 0.94113 0.94922 0.92448 1.62267 1.13210 1.46883 1.04705
1.19370 0.91696 0.96113 0.83731 1.21244 1.29699 1.01770 1.02650
0.92862 1.25722 0.97615 0.99576 0.95920 1.70043 1.43951 1.33120
1.09740 0.85502 0.78892 0.79620 0.77326 1.19999 1.20541 1.19427
1.22276 0.88924 0.94362 0.84799 1.49538 1.20385 1.37664 1.07229
1.77645 0.99764 1.14037 1.18628 1.22832 0.93611 0.93910 0.85114
1.18503 0.93101 0.99460 0.99735 1.22293 0.93858 0.98450 0.92783
1.22585 0.96189 0.95519 1.02785 1.23781 0.97986 0.94191 0.87891
1.67873 1.07741 1.27327 1.18652 1.22891 0.91334 0.89294 0.98174
1.46368 1.20042 1.39707 1.12014 1.22919 1.07188 1.06433 0.71275
1.23712 0.90999 0.91234 0.84317 1.93468 1.28806 1.46424 1.80972
0.89561 0.88086 0.87210 0.92320 0.91433 0.98975 0.96795 0.92639
0.89359 0.86697 0.80907 0.79237 0.78847 0.83026 0.86254 0.87720
0.85529
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -8.01 14.32 67.78 0.97 -7.04 16
2 C -0.15 -6.13 5.70 25.65 0.15 -5.98 16
3 C 0.10 4.35 5.14 85.56 0.44 4.79 16
4 N -0.55 -24.43 4.79 -917.77 -4.40 -28.83 16
5 C 0.22 11.34 4.58 85.56 0.39 11.73 16
6 C -0.52 -29.33 8.71 25.60 0.22 -29.11 16
7 H 0.05 3.06 7.38 -2.91 -0.02 3.04 16
8 C 0.01 0.58 5.46 84.65 0.46 1.05 16
9 N -0.93 -55.33 13.29 21.45 0.28 -55.04 16
10 Si 0.96 45.00 29.54 68.60 2.03 47.03 16
11 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16
12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16
13 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16
14 C 0.31 11.68 5.84 170.81 1.00 12.68 16
15 N -0.36 -12.15 3.58 -359.62 -1.29 -13.44 16
16 N -0.28 -8.56 12.34 -50.83 -0.63 -9.19 16
17 C 0.32 7.34 7.66 136.34 1.04 8.38 16
18 C -0.10 -1.63 5.86 -19.99 -0.12 -1.75 16
19 C -0.05 -0.33 8.68 22.71 0.20 -0.13 16
20 C -0.15 -0.51 10.10 22.33 0.23 -0.28 16
21 C 0.12 0.94 11.17 84.71 0.95 1.89 16
22 N -0.51 -8.48 10.35 -194.81 -2.02 -10.50 16
23 C 0.14 2.68 10.86 85.01 0.92 3.60 16
24 N -0.48 -10.63 3.16 -541.68 -1.71 -12.34 16
25 C 0.06 0.66 9.14 127.77 1.17 1.83 16
26 C 0.46 14.40 6.61 179.02 1.18 15.59 16
27 S -0.62 -22.43 24.75 -56.49 -1.40 -23.82 16
28 H 0.09 3.50 7.84 -2.91 -0.02 3.47 16
29 H 0.10 3.65 8.06 -2.91 -0.02 3.63 16
30 H 0.11 4.60 5.69 -2.91 -0.02 4.59 16
31 H 0.06 2.74 6.94 -2.39 -0.02 2.73 16
32 H 0.07 2.85 5.08 -2.39 -0.01 2.84 16
33 H -0.01 -0.41 6.60 -2.38 -0.02 -0.43 16
34 H 0.01 0.78 7.80 -2.39 -0.02 0.76 16
35 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16
36 H 0.09 3.39 5.98 -2.39 -0.01 3.37 16
37 H 0.12 4.23 7.86 -2.39 -0.02 4.21 16
38 H 0.17 0.18 5.04 -2.91 -0.01 0.16 16
39 H 0.19 -0.93 8.06 -2.91 -0.02 -0.96 16
40 H 0.19 0.24 8.06 -2.91 -0.02 0.22 16
41 H 0.15 3.29 7.97 -2.91 -0.02 3.27 16
42 H 0.12 0.58 7.62 -2.39 -0.02 0.57 16
43 H 0.10 1.50 7.44 -2.39 -0.02 1.48 16
44 H 0.13 0.54 6.54 -2.39 -0.02 0.52 16
Total: -1.00 -77.87 371.19 1.11 -76.76
By element:
Atomic # 1 Polarization: 11.09 SS G_CDS: 1.03 Total: 12.13 kcal
Atomic # 6 Polarization: 8.05 SS G_CDS: 9.20 Total: 17.25 kcal
Atomic # 7 Polarization: -119.58 SS G_CDS: -9.75 Total: -129.34 kcal
Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal
Atomic # 16 Polarization: -22.43 SS G_CDS: -1.40 Total: -23.82 kcal
Total: -77.87 1.11 -76.76 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000793561762.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 235.596 kcal
(2) G-P(sol) polarization free energy of solvation -77.865 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.730 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.107 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.758 kcal
(6) G-S(sol) free energy of system = (1) + (5) 158.837 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds