Wall clock time and date at job start Wed Apr 1 2020 02:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 119.99966 * 2 1 4 4 N 1.46501 * 109.47430 * 124.99513 * 3 2 1 5 5 C 1.46760 * 124.35310 * 269.72730 * 4 3 2 6 6 C 1.54652 * 105.38357 * 162.85172 * 5 4 3 7 7 C 1.54626 * 101.68584 * 25.76939 * 6 5 4 8 8 H 1.09001 * 110.48748 * 93.66333 * 7 6 5 9 9 O 1.45199 * 110.48547 * 216.30953 * 7 6 5 10 10 C 1.34229 * 117.00064 * 206.22568 * 9 7 6 11 11 O 1.20827 * 119.99765 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00350 * 179.97438 * 10 9 7 13 13 C 1.50708 * 109.47504 * 180.02562 * 12 10 9 14 14 C 1.38302 * 119.92842 * 269.73260 * 13 12 10 15 15 C 1.38103 * 120.06645 * 179.72513 * 14 13 12 16 16 C 1.38877 * 119.92576 * 0.51895 * 15 14 13 17 17 O 1.35752 * 120.06339 * 179.72864 * 16 15 14 18 18 C 1.34831 * 117.00115 * 174.48419 * 17 16 15 19 19 H 1.08004 * 119.99662 * 5.06272 * 18 17 16 20 20 C 1.38651 * 120.00620 * 185.05606 * 18 17 16 21 21 N 1.31563 * 119.99364 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00625 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.46711 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47594 * 119.99762 * 22 20 18 25 25 H 1.48494 * 109.47032 * 240.00405 * 22 20 18 26 26 C 1.38874 * 119.86889 * 359.75245 * 16 15 14 27 27 C 1.38106 * 119.92721 * 359.97438 * 26 16 15 28 28 C 1.34424 * 124.34876 * 90.02465 * 4 3 2 29 29 O 1.21286 * 124.93682 * 0.43156 * 28 4 3 30 30 H 1.07995 * 120.00410 * 0.02562 * 1 2 3 31 31 H 1.08005 * 119.99785 * 179.72434 * 1 2 3 32 32 H 1.07995 * 120.00410 * 179.97438 * 2 1 3 33 33 H 1.08999 * 109.47041 * 244.99678 * 3 2 1 34 34 H 1.09002 * 109.46829 * 4.99795 * 3 2 1 35 35 H 1.09000 * 110.24641 * 281.98593 * 5 4 3 36 36 H 1.09006 * 110.24413 * 43.98381 * 5 4 3 37 37 H 1.09000 * 111.19619 * 267.59050 * 6 5 4 38 38 H 1.09005 * 110.85216 * 143.79227 * 6 5 4 39 39 H 1.09004 * 109.47329 * 299.99924 * 12 10 9 40 40 H 1.09001 * 109.47230 * 60.00076 * 12 10 9 41 41 H 1.08004 * 119.96599 * 359.96888 * 14 13 12 42 42 H 1.07994 * 120.03475 * 180.27124 * 15 14 13 43 43 H 0.96998 * 119.99522 * 179.97438 * 21 20 18 44 44 H 1.07995 * 120.03807 * 179.97438 * 26 16 15 45 45 H 1.08002 * 119.96372 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.6617 1.8488 2.4644 6 6 3.7491 1.2819 3.4067 7 6 4.9268 1.0617 2.4292 8 1 5.5853 1.9303 2.4235 9 8 5.6662 -0.1359 2.7860 10 6 6.9586 -0.1838 2.4268 11 8 7.4557 0.7445 1.8342 12 6 7.7899 -1.3948 2.7635 13 6 9.1945 -1.1975 2.2539 14 6 9.5307 -1.6141 0.9787 15 6 10.8154 -1.4297 0.5067 16 6 11.7728 -0.8349 1.3181 17 8 13.0379 -0.6572 0.8590 18 6 13.8864 0.0278 1.6520 19 1 13.5734 0.3359 2.6388 20 6 15.1606 0.3365 1.2010 21 7 15.5416 -0.0386 -0.0011 22 14 16.3363 1.2848 2.3000 23 1 15.6705 1.5871 3.5926 24 1 17.5509 0.4673 2.5476 25 1 16.7216 2.5546 1.6334 26 6 11.4336 -0.4228 2.6001 27 6 10.1456 -0.6049 3.0642 28 6 4.2628 0.8918 1.0806 29 8 4.7976 0.4266 0.0965 30 1 -0.5400 0.9352 -0.0004 31 1 -0.5400 -0.9354 -0.0045 32 1 1.8500 -0.9352 0.0004 33 1 2.6213 1.4026 -0.9314 34 1 1.3585 2.1316 0.0895 35 1 2.6895 2.9384 2.4642 36 1 1.6770 1.4959 2.7712 37 1 3.4314 0.3397 3.8533 38 1 4.0117 2.0073 4.1768 39 1 7.8120 -1.5312 3.8447 40 1 7.3535 -2.2768 2.2948 41 1 8.7867 -2.0806 0.3498 42 1 11.0762 -1.7512 -0.4907 43 1 16.4329 0.1777 -0.3167 44 1 12.1760 0.0396 3.2335 45 1 9.8812 -0.2850 4.0613 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798615971.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:20 Heat of formation + Delta-G solvation = -87.842203 kcal Electronic energy + Delta-G solvation = -28882.860919 eV Core-core repulsion = 24639.390648 eV Total energy + Delta-G solvation = -4243.470271 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.24066 -39.89609 -38.89125 -36.93034 -36.84053 -36.12992 -34.95877 -32.49901 -31.75114 -31.22726 -30.13107 -27.92094 -26.91000 -26.34822 -25.12917 -22.53005 -21.96177 -21.88577 -20.80684 -20.20970 -19.57692 -17.96360 -17.90370 -17.49661 -16.96948 -16.89986 -16.18649 -15.93854 -15.40011 -15.08119 -14.62472 -14.55530 -14.34873 -14.14699 -13.81014 -13.71542 -13.56988 -13.46910 -13.21050 -12.83776 -12.69482 -12.65893 -12.56654 -12.46197 -11.98748 -11.77901 -11.62157 -11.45527 -11.40453 -11.26328 -10.87483 -10.76042 -10.58166 -10.40125 -10.26439 -10.04833 -9.76236 -9.30082 -9.19815 -8.81001 -8.12823 -7.16674 -6.42607 -4.01048 1.59357 1.94663 2.27985 2.28999 2.39080 2.64129 2.97613 3.14679 3.16264 3.21386 3.84612 3.92935 3.98927 4.32574 4.37248 4.51344 4.56314 4.61601 4.81183 4.95093 4.96066 5.02463 5.10784 5.18404 5.25499 5.27819 5.29020 5.34159 5.44019 5.50276 5.66692 5.73792 5.88434 5.92876 6.11498 6.24385 6.27370 6.39603 6.44733 6.62689 6.73459 6.93843 7.07984 7.26591 7.37454 7.47035 7.77852 7.85106 7.92499 8.02746 9.03001 9.73381 10.75492 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.022613 B = 0.001894 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.941604 B =14777.967333 C =15000.375816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.171 4.171 3 C 0.153 3.847 4 N -0.617 5.617 5 C 0.105 3.895 6 C -0.125 4.125 7 C 0.056 3.944 8 H 0.121 0.879 9 O -0.342 6.342 10 C 0.455 3.545 11 O -0.478 6.478 12 C -0.047 4.047 13 C -0.183 4.183 14 C -0.054 4.054 15 C -0.191 4.191 16 C 0.160 3.840 17 O -0.177 6.177 18 C -0.391 4.391 19 H 0.093 0.907 20 C 0.038 3.962 21 N -0.862 5.862 22 Si 0.942 3.058 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.234 4.234 27 C -0.053 4.053 28 C 0.505 3.495 29 O -0.502 6.502 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.118 0.882 43 H 0.269 0.731 44 H 0.128 0.872 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.151 2.324 8.434 31.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.190 4.190 3 C 0.032 3.968 4 N -0.353 5.353 5 C -0.018 4.018 6 C -0.162 4.162 7 C -0.003 4.003 8 H 0.139 0.861 9 O -0.259 6.259 10 C 0.296 3.704 11 O -0.362 6.362 12 C -0.084 4.084 13 C -0.184 4.184 14 C -0.072 4.072 15 C -0.210 4.210 16 C 0.106 3.894 17 O -0.080 6.080 18 C -0.467 4.467 19 H 0.110 0.890 20 C -0.166 4.166 21 N -0.497 5.497 22 Si 0.767 3.233 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.202 1.202 26 C -0.253 4.253 27 C -0.071 4.071 28 C 0.291 3.709 29 O -0.375 6.375 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.130 0.870 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.129 0.871 42 H 0.136 0.864 43 H 0.079 0.921 44 H 0.146 0.854 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -29.396 2.342 7.288 30.376 hybrid contribution 0.471 0.676 0.454 0.940 sum -28.925 3.018 7.742 30.095 Atomic orbital electron populations 1.23882 0.95563 1.02168 0.99998 1.23348 0.96194 0.99180 1.00247 1.20508 0.91555 0.95523 0.89264 1.48151 1.12169 1.62766 1.12242 1.22164 0.99454 0.99141 0.81078 1.22786 0.92366 1.03913 0.97181 1.23238 0.93716 0.89989 0.93405 0.86103 1.86646 1.24963 1.40719 1.73579 1.24325 0.79925 0.89987 0.76155 1.90715 1.71654 1.37734 1.36070 1.20093 0.91674 0.93327 1.03309 1.18625 0.92718 1.10508 0.96592 1.20458 0.95063 0.97655 0.94067 1.20168 0.92376 1.08222 1.00268 1.19399 0.85870 0.92342 0.91818 1.83980 1.15376 1.64249 1.44368 1.21391 0.93380 1.33744 0.98192 0.88965 1.25306 0.97050 0.97474 0.96770 1.70057 1.19577 1.43389 1.16645 0.85633 0.79593 0.78891 0.79219 1.19094 1.20145 1.20155 1.21100 0.97336 1.09561 0.97318 1.20520 0.92677 0.96024 0.97929 1.21036 0.82011 0.77511 0.90334 1.90789 1.67381 1.43173 1.36193 0.88362 0.88107 0.87045 0.88901 0.89604 0.90337 0.89558 0.88183 0.87954 0.87737 0.87726 0.87115 0.86385 0.92074 0.85447 0.87617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.94 14.32 29.02 0.42 -0.52 16 2 C -0.17 -1.23 9.85 -36.02 -0.35 -1.58 16 3 C 0.15 1.12 6.37 -5.19 -0.03 1.09 16 4 N -0.62 -5.38 2.92 -173.67 -0.51 -5.88 16 5 C 0.10 0.51 7.35 -3.03 -0.02 0.48 16 6 C -0.12 -0.71 6.93 -25.01 -0.17 -0.88 16 7 C 0.06 0.61 3.21 -26.75 -0.09 0.52 16 8 H 0.12 1.40 7.26 -51.93 -0.38 1.03 16 9 O -0.34 -4.42 9.95 -42.15 -0.42 -4.84 16 10 C 0.45 7.09 7.94 36.00 0.29 7.37 16 11 O -0.48 -9.37 15.30 -18.75 -0.29 -9.66 16 12 C -0.05 -0.64 5.94 -29.03 -0.17 -0.81 16 13 C -0.18 -3.32 4.38 -104.57 -0.46 -3.77 16 14 C -0.05 -1.05 9.69 -39.61 -0.38 -1.44 16 15 C -0.19 -4.31 9.99 -39.39 -0.39 -4.71 16 16 C 0.16 4.04 6.65 -39.11 -0.26 3.78 16 17 O -0.18 -5.20 9.76 0.04 0.00 -5.20 16 18 C -0.39 -11.19 9.49 30.88 0.29 -10.90 16 19 H 0.09 2.45 5.20 -52.48 -0.27 2.17 16 20 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 21 N -0.86 -25.77 13.67 55.48 0.76 -25.02 16 22 Si 0.94 20.92 29.55 -169.99 -5.02 15.90 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 24 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 26 C -0.23 -5.29 9.17 -39.39 -0.36 -5.65 16 27 C -0.05 -1.02 9.69 -39.61 -0.38 -1.40 16 28 C 0.51 6.55 7.71 -10.86 -0.08 6.47 16 29 O -0.50 -8.93 17.59 1.49 0.03 -8.91 16 30 H 0.10 0.37 7.84 -52.49 -0.41 -0.04 16 31 H 0.10 0.47 8.06 -52.48 -0.42 0.04 16 32 H 0.11 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.09 0.82 7.92 -51.93 -0.41 0.41 16 34 H 0.09 0.39 7.79 -51.93 -0.40 -0.01 16 35 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 36 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.10 0.52 8.11 -51.93 -0.42 0.10 16 38 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.10 1.12 8.08 -51.93 -0.42 0.70 16 40 H 0.10 1.23 8.08 -51.93 -0.42 0.81 16 41 H 0.11 1.88 8.06 -52.48 -0.42 1.45 16 42 H 0.12 2.57 8.06 -52.49 -0.42 2.15 16 43 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.13 2.86 5.64 -52.49 -0.30 2.56 16 45 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 393.21 15.07 5.93 5.93 Total: -1.00 -37.55 393.21 -7.74 -45.29 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -5.95 Total: 3.36 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -2.27 Total: -10.97 kcal Atomic # 7 Polarization: -31.15 SS G_CDS: 0.25 Total: -30.90 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.68 Total: -28.61 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -37.55 -7.74 -45.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798615971.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.552 kcal (2) G-P(sol) polarization free energy of solvation -37.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds