Wall clock time and date at job start Wed Apr 1 2020 02:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 119.99966 * 2 1 4 4 N 1.46501 * 109.47430 * 124.99513 * 3 2 1 5 5 C 1.46760 * 124.35310 * 269.72730 * 4 3 2 6 6 C 1.54652 * 105.38357 * 162.85172 * 5 4 3 7 7 C 1.54626 * 101.68584 * 25.76939 * 6 5 4 8 8 H 1.09001 * 110.48748 * 93.66333 * 7 6 5 9 9 O 1.45199 * 110.48547 * 216.30953 * 7 6 5 10 10 C 1.34229 * 117.00064 * 206.22568 * 9 7 6 11 11 O 1.20827 * 119.99765 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00350 * 179.97438 * 10 9 7 13 13 C 1.50708 * 109.47504 * 180.02562 * 12 10 9 14 14 C 1.38302 * 119.92842 * 269.73260 * 13 12 10 15 15 C 1.38103 * 120.06645 * 179.72513 * 14 13 12 16 16 C 1.38877 * 119.92576 * 0.51895 * 15 14 13 17 17 O 1.35752 * 120.06339 * 179.72864 * 16 15 14 18 18 C 1.34831 * 117.00115 * 174.48419 * 17 16 15 19 19 H 1.08004 * 119.99662 * 5.06272 * 18 17 16 20 20 C 1.38651 * 120.00620 * 185.05606 * 18 17 16 21 21 N 1.31563 * 119.99364 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00625 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.46711 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47594 * 119.99762 * 22 20 18 25 25 H 1.48494 * 109.47032 * 240.00405 * 22 20 18 26 26 C 1.38874 * 119.86889 * 359.75245 * 16 15 14 27 27 C 1.38106 * 119.92721 * 359.97438 * 26 16 15 28 28 C 1.34424 * 124.34876 * 90.02465 * 4 3 2 29 29 O 1.21286 * 124.93682 * 0.43156 * 28 4 3 30 30 H 1.07995 * 120.00410 * 0.02562 * 1 2 3 31 31 H 1.08005 * 119.99785 * 179.72434 * 1 2 3 32 32 H 1.07995 * 120.00410 * 179.97438 * 2 1 3 33 33 H 1.08999 * 109.47041 * 244.99678 * 3 2 1 34 34 H 1.09002 * 109.46829 * 4.99795 * 3 2 1 35 35 H 1.09000 * 110.24641 * 281.98593 * 5 4 3 36 36 H 1.09006 * 110.24413 * 43.98381 * 5 4 3 37 37 H 1.09000 * 111.19619 * 267.59050 * 6 5 4 38 38 H 1.09005 * 110.85216 * 143.79227 * 6 5 4 39 39 H 1.09004 * 109.47329 * 299.99924 * 12 10 9 40 40 H 1.09001 * 109.47230 * 60.00076 * 12 10 9 41 41 H 1.08004 * 119.96599 * 359.96888 * 14 13 12 42 42 H 1.07994 * 120.03475 * 180.27124 * 15 14 13 43 43 H 0.96998 * 119.99522 * 179.97438 * 21 20 18 44 44 H 1.07995 * 120.03807 * 179.97438 * 26 16 15 45 45 H 1.08002 * 119.96372 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.6617 1.8488 2.4644 6 6 3.7491 1.2819 3.4067 7 6 4.9268 1.0617 2.4292 8 1 5.5853 1.9303 2.4235 9 8 5.6662 -0.1359 2.7860 10 6 6.9586 -0.1838 2.4268 11 8 7.4557 0.7445 1.8342 12 6 7.7899 -1.3948 2.7635 13 6 9.1945 -1.1975 2.2539 14 6 9.5307 -1.6141 0.9787 15 6 10.8154 -1.4297 0.5067 16 6 11.7728 -0.8349 1.3181 17 8 13.0379 -0.6572 0.8590 18 6 13.8864 0.0278 1.6520 19 1 13.5734 0.3359 2.6388 20 6 15.1606 0.3365 1.2010 21 7 15.5416 -0.0386 -0.0011 22 14 16.3363 1.2848 2.3000 23 1 15.6705 1.5871 3.5926 24 1 17.5509 0.4673 2.5476 25 1 16.7216 2.5546 1.6334 26 6 11.4336 -0.4228 2.6001 27 6 10.1456 -0.6049 3.0642 28 6 4.2628 0.8918 1.0806 29 8 4.7976 0.4266 0.0965 30 1 -0.5400 0.9352 -0.0004 31 1 -0.5400 -0.9354 -0.0045 32 1 1.8500 -0.9352 0.0004 33 1 2.6213 1.4026 -0.9314 34 1 1.3585 2.1316 0.0895 35 1 2.6895 2.9384 2.4642 36 1 1.6770 1.4959 2.7712 37 1 3.4314 0.3397 3.8533 38 1 4.0117 2.0073 4.1768 39 1 7.8120 -1.5312 3.8447 40 1 7.3535 -2.2768 2.2948 41 1 8.7867 -2.0806 0.3498 42 1 11.0762 -1.7512 -0.4907 43 1 16.4329 0.1777 -0.3167 44 1 12.1760 0.0396 3.2335 45 1 9.8812 -0.2850 4.0613 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798615971.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:20 Heat of formation + Delta-G solvation = -112.214264 kcal Electronic energy + Delta-G solvation = -28883.917771 eV Core-core repulsion = 24639.390648 eV Total energy + Delta-G solvation = -4244.527123 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.18371 -41.08552 -40.55669 -38.49842 -37.78422 -37.41091 -35.56437 -34.43625 -33.11201 -32.08317 -31.82833 -28.92386 -28.09544 -27.29174 -26.86205 -23.69228 -23.49645 -22.83428 -21.81244 -21.32790 -20.34781 -19.88506 -18.99182 -18.87804 -18.26568 -17.81385 -17.19484 -16.98828 -16.45138 -16.31785 -16.12915 -15.88396 -15.73833 -15.52490 -15.12647 -14.87613 -14.74787 -14.45741 -14.40718 -14.19583 -14.07221 -13.64713 -13.40730 -13.17685 -13.14084 -13.03747 -12.98339 -12.65135 -12.54633 -12.37997 -12.32305 -12.27586 -12.09915 -12.00798 -11.55220 -11.20833 -10.82445 -10.81323 -10.44359 -9.87538 -9.81611 -8.98513 -8.48995 -6.17628 0.51757 0.56935 0.97335 1.23418 1.24706 1.33750 1.42594 1.53040 1.77718 2.13118 2.16699 2.81163 3.11815 3.14025 3.35569 3.47021 3.64380 3.79975 3.91308 3.94778 3.99487 4.03467 4.08252 4.15159 4.39375 4.39669 4.43098 4.54029 4.62426 4.64554 4.67931 4.75066 4.90144 4.96245 5.00410 5.04847 5.12093 5.24662 5.34624 5.38047 5.51241 5.63214 5.67159 5.69925 5.73227 5.92297 6.00604 6.16932 6.73183 6.92282 6.95224 7.75487 8.74654 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.022613 B = 0.001894 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.941604 B =14777.967333 C =15000.375816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.197 4.197 3 C 0.149 3.851 4 N -0.607 5.607 5 C 0.100 3.900 6 C -0.110 4.110 7 C 0.045 3.955 8 H 0.110 0.890 9 O -0.333 6.333 10 C 0.459 3.541 11 O -0.529 6.529 12 C -0.046 4.046 13 C -0.159 4.159 14 C -0.057 4.057 15 C -0.208 4.208 16 C 0.118 3.882 17 O -0.232 6.232 18 C -0.415 4.415 19 H 0.104 0.896 20 C -0.026 4.026 21 N -0.922 5.922 22 Si 1.022 2.978 23 H -0.249 1.249 24 H -0.266 1.266 25 H -0.270 1.270 26 C -0.243 4.243 27 C -0.051 4.051 28 C 0.489 3.511 29 O -0.570 6.570 30 H 0.122 0.878 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.123 0.877 35 H 0.103 0.897 36 H 0.116 0.884 37 H 0.110 0.890 38 H 0.133 0.867 39 H 0.150 0.850 40 H 0.133 0.867 41 H 0.139 0.861 42 H 0.111 0.889 43 H 0.273 0.727 44 H 0.124 0.876 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.557 3.211 12.225 36.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.216 4.216 3 C 0.029 3.971 4 N -0.341 5.341 5 C -0.021 4.021 6 C -0.147 4.147 7 C -0.014 4.014 8 H 0.128 0.872 9 O -0.249 6.249 10 C 0.303 3.697 11 O -0.416 6.416 12 C -0.083 4.083 13 C -0.160 4.160 14 C -0.075 4.075 15 C -0.227 4.227 16 C 0.067 3.933 17 O -0.139 6.139 18 C -0.491 4.491 19 H 0.121 0.879 20 C -0.223 4.223 21 N -0.560 5.560 22 Si 0.841 3.159 23 H -0.173 1.173 24 H -0.191 1.191 25 H -0.195 1.195 26 C -0.262 4.262 27 C -0.069 4.069 28 C 0.275 3.725 29 O -0.448 6.448 30 H 0.141 0.859 31 H 0.126 0.874 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.141 0.859 35 H 0.121 0.879 36 H 0.134 0.866 37 H 0.128 0.872 38 H 0.151 0.849 39 H 0.168 0.832 40 H 0.151 0.849 41 H 0.156 0.844 42 H 0.129 0.871 43 H 0.082 0.918 44 H 0.141 0.859 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -33.934 3.221 11.144 35.862 hybrid contribution 1.309 0.335 -0.699 1.521 sum -32.625 3.556 10.445 34.440 Atomic orbital electron populations 1.24102 0.94610 1.03640 0.96373 1.23126 0.96889 0.97938 1.03642 1.20650 0.91503 0.97053 0.87924 1.48352 1.10864 1.60743 1.14156 1.22566 1.00487 1.00576 0.78491 1.22935 0.89689 1.05395 0.96692 1.23619 0.94850 0.88603 0.94290 0.87186 1.86612 1.23734 1.41777 1.72800 1.24525 0.80738 0.89542 0.74925 1.90720 1.72782 1.39700 1.38442 1.20248 0.88319 0.93505 1.06230 1.19168 0.95003 1.06537 0.95307 1.20862 0.94093 0.97217 0.95292 1.20399 0.93531 1.08620 1.00180 1.19927 0.85448 0.94248 0.93645 1.83946 1.17253 1.66703 1.45961 1.21913 0.94055 1.34241 0.98854 0.87902 1.26674 0.98727 0.98376 0.98493 1.70207 1.20467 1.46074 1.19225 0.84483 0.76796 0.77155 0.77446 1.17262 1.19054 1.19492 1.21256 0.99048 1.09561 0.96305 1.20978 0.91101 0.94881 0.99894 1.21536 0.83405 0.77223 0.90314 1.90740 1.69132 1.46597 1.38376 0.85947 0.87422 0.89794 0.91606 0.85921 0.87894 0.86576 0.87181 0.84911 0.83238 0.84900 0.84350 0.87094 0.91811 0.85861 0.83369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 14.32 67.79 0.97 -0.14 16 2 C -0.20 -2.59 9.85 25.65 0.25 -2.34 16 3 C 0.15 2.00 6.37 85.63 0.55 2.54 16 4 N -0.61 -9.52 2.92 -821.97 -2.40 -11.92 16 5 C 0.10 0.54 7.35 86.89 0.64 1.18 16 6 C -0.11 -0.79 6.93 31.71 0.22 -0.57 16 7 C 0.05 0.92 3.21 30.58 0.10 1.01 16 8 H 0.11 2.48 7.26 -2.39 -0.02 2.46 16 9 O -0.33 -7.84 9.95 -48.64 -0.48 -8.32 16 10 C 0.46 13.32 7.94 71.23 0.57 13.89 16 11 O -0.53 -20.50 15.30 21.96 0.34 -20.16 16 12 C -0.05 -1.08 5.94 29.10 0.17 -0.91 16 13 C -0.16 -5.40 4.38 -19.83 -0.09 -5.48 16 14 C -0.06 -2.18 9.69 22.25 0.22 -1.96 16 15 C -0.21 -9.84 9.99 22.39 0.22 -9.62 16 16 C 0.12 6.29 6.65 22.58 0.15 6.44 16 17 O -0.23 -14.71 9.76 -22.78 -0.22 -14.93 16 18 C -0.41 -25.10 9.49 67.92 0.64 -24.45 16 19 H 0.10 5.70 5.20 -2.91 -0.02 5.68 16 20 C -0.03 -1.50 5.49 84.83 0.47 -1.03 16 21 N -0.92 -58.46 13.67 21.61 0.30 -58.16 16 22 Si 1.02 44.14 29.55 68.60 2.03 46.17 16 23 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 24 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 25 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 26 C -0.24 -11.17 9.17 22.39 0.21 -10.96 16 27 C -0.05 -1.84 9.69 22.25 0.22 -1.62 16 28 C 0.49 12.60 7.71 87.90 0.68 13.28 16 29 O -0.57 -21.32 17.59 0.83 0.01 -21.30 16 30 H 0.12 0.35 7.84 -2.91 -0.02 0.33 16 31 H 0.11 0.68 8.06 -2.91 -0.02 0.65 16 32 H 0.08 1.55 8.06 -2.91 -0.02 1.53 16 33 H 0.07 1.23 7.92 -2.39 -0.02 1.21 16 34 H 0.12 0.69 7.79 -2.39 -0.02 0.68 16 35 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.12 0.05 8.14 -2.38 -0.02 0.03 16 37 H 0.11 0.64 8.11 -2.39 -0.02 0.62 16 38 H 0.13 0.22 8.14 -2.38 -0.02 0.20 16 39 H 0.15 2.28 8.08 -2.39 -0.02 2.26 16 40 H 0.13 2.50 8.08 -2.39 -0.02 2.48 16 41 H 0.14 4.51 8.06 -2.91 -0.02 4.48 16 42 H 0.11 5.23 8.06 -2.91 -0.02 5.20 16 43 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 44 H 0.12 5.66 5.64 -2.91 -0.02 5.65 16 45 H 0.15 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -93.36 393.21 6.75 -86.60 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 1.01 Total: 22.77 kcal Atomic # 6 Polarization: -26.92 SS G_CDS: 6.18 Total: -20.75 kcal Atomic # 7 Polarization: -67.98 SS G_CDS: -2.10 Total: -70.08 kcal Atomic # 8 Polarization: -64.36 SS G_CDS: -0.36 Total: -64.72 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -93.36 6.75 -86.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798615971.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.613 kcal (2) G-P(sol) polarization free energy of solvation -93.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds