Wall clock time and date at job start Wed Apr 1 2020 02:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50699 * 119.99747 * 2 1 4 4 N 1.46495 * 109.46905 * 125.00205 * 3 2 1 5 5 C 1.46766 * 124.34973 * 269.72950 * 4 3 2 6 6 C 1.54665 * 105.38435 * 162.85368 * 5 4 3 7 7 C 1.54632 * 101.68246 * 25.76268 * 6 5 4 8 8 H 1.09007 * 110.48411 * 216.31373 * 7 6 5 9 9 O 1.45199 * 110.59887 * 93.72452 * 7 6 5 10 10 C 1.34229 * 116.99804 * 153.70187 * 9 7 6 11 11 O 1.20826 * 120.00334 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99725 * 179.97438 * 10 9 7 13 13 C 1.50698 * 109.47011 * 180.02562 * 12 10 9 14 14 C 1.38322 * 119.96452 * 269.72305 * 13 12 10 15 15 C 1.38281 * 120.14219 * 179.76492 * 14 13 12 16 16 C 1.38128 * 120.06562 * 0.50835 * 15 14 13 17 17 C 1.38852 * 119.92767 * 359.74772 * 16 15 14 18 18 O 1.35760 * 120.06751 * 179.97438 * 17 16 15 19 19 C 1.34826 * 116.99642 * 354.48169 * 18 17 16 20 20 H 1.07995 * 120.00058 * 5.06801 * 19 18 17 21 21 C 1.38652 * 119.99843 * 185.05623 * 19 18 17 22 22 N 1.31555 * 120.00331 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00031 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47087 * 89.99747 * 23 21 19 25 25 H 1.48505 * 109.47291 * 209.99736 * 23 21 19 26 26 H 1.48499 * 109.47230 * 329.99606 * 23 21 19 27 27 C 1.38074 * 119.97055 * 89.99861 * 13 12 10 28 28 C 1.34421 * 124.34875 * 90.01832 * 4 3 2 29 29 O 1.21275 * 124.94809 * 0.43833 * 28 4 3 30 30 H 1.07998 * 119.99855 * 179.97438 * 1 2 3 31 31 H 1.07995 * 119.99753 * 359.72297 * 1 2 3 32 32 H 1.07993 * 119.99633 * 180.02562 * 2 1 3 33 33 H 1.08994 * 109.47005 * 244.99984 * 3 2 1 34 34 H 1.09002 * 109.47280 * 5.00115 * 3 2 1 35 35 H 1.08998 * 110.23878 * 281.97850 * 5 4 3 36 36 H 1.08999 * 110.24932 * 43.97659 * 5 4 3 37 37 H 1.08998 * 111.19229 * 267.59109 * 6 5 4 38 38 H 1.08997 * 110.85149 * 143.78751 * 6 5 4 39 39 H 1.09000 * 109.46839 * 300.00062 * 12 10 9 40 40 H 1.08990 * 109.47196 * 60.00110 * 12 10 9 41 41 H 1.08006 * 119.92974 * 0.02562 * 14 13 12 42 42 H 1.08004 * 119.96909 * 180.25650 * 15 14 13 43 43 H 1.07996 * 120.03251 * 179.71913 * 16 15 14 44 44 H 0.96996 * 120.00570 * 180.02562 * 22 21 19 45 45 H 1.08004 * 120.03236 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.6618 1.8485 2.4644 6 6 3.7493 1.2815 3.4067 7 6 4.9270 1.0614 2.4291 8 1 5.4820 0.1622 2.6968 9 8 5.8066 2.2165 2.4205 10 6 7.0892 2.0033 2.0869 11 8 7.4643 0.8885 1.8107 12 6 8.0610 3.1547 2.0558 13 6 9.4234 2.6514 1.6540 14 6 10.3178 2.2312 2.6219 15 6 11.5671 1.7641 2.2570 16 6 11.9296 1.7256 0.9247 17 6 11.0359 2.1516 -0.0489 18 8 11.3894 2.1155 -1.3592 19 6 12.6602 1.7641 -1.6408 20 1 13.3215 1.4482 -0.8477 21 6 13.1179 1.8081 -2.9489 22 7 14.3578 1.4648 -3.2239 23 14 11.9741 2.3550 -4.3208 24 1 12.0798 3.8257 -4.4966 25 1 12.3575 1.6765 -5.5850 26 1 10.5758 1.9973 -3.9716 27 6 9.7798 2.6154 0.3205 28 6 4.2628 0.8916 1.0804 29 8 4.7978 0.4264 0.0964 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5399 0.9353 0.0045 32 1 1.8500 -0.9353 -0.0004 33 1 2.6213 1.4026 -0.9313 34 1 1.3586 2.1317 0.0896 35 1 2.6897 2.9381 2.4642 36 1 1.6772 1.4957 2.7712 37 1 3.4316 0.3393 3.8532 38 1 4.0120 2.0068 4.1768 39 1 7.7211 3.8976 1.3342 40 1 8.1182 3.6087 3.0450 41 1 10.0382 2.2641 3.6646 42 1 12.2618 1.4328 3.0148 43 1 12.9071 1.3649 0.6406 44 1 14.6781 1.4959 -4.1389 45 1 9.0826 2.9474 -0.4345 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798643181.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:23 Heat of formation + Delta-G solvation = -83.872788 kcal Electronic energy + Delta-G solvation = -29190.393615 eV Core-core repulsion = 24947.095471 eV Total energy + Delta-G solvation = -4243.298144 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.30165 -39.95858 -39.04695 -37.07615 -36.81595 -36.24681 -34.90238 -32.49589 -32.24476 -31.49691 -29.48066 -28.07298 -27.17380 -26.48271 -25.15469 -22.76238 -22.01525 -21.60657 -20.81980 -20.31238 -19.67162 -18.04511 -17.72083 -17.46373 -17.07141 -16.64710 -16.34957 -15.87012 -15.58801 -15.22769 -14.95677 -14.70548 -14.30692 -14.09383 -13.91498 -13.72795 -13.63087 -13.52211 -13.21631 -13.03732 -12.67030 -12.56871 -12.54423 -12.18759 -12.14796 -11.90827 -11.75914 -11.62467 -11.42592 -11.31149 -10.86876 -10.79524 -10.70715 -10.38015 -10.12150 -10.04887 -9.79939 -9.36529 -9.15510 -8.83521 -8.18230 -7.35349 -6.37331 -4.03950 1.64421 1.70296 2.09882 2.28384 2.29162 2.68445 2.96051 3.26677 3.29433 3.46729 3.85271 3.91117 4.28771 4.30493 4.38785 4.45323 4.58576 4.61364 4.68707 4.80836 4.96410 4.98270 5.04413 5.11678 5.15306 5.23554 5.27538 5.30245 5.43349 5.47073 5.52062 5.68173 5.82634 5.95398 6.12158 6.12250 6.25412 6.26207 6.30661 6.52973 6.66345 6.78740 7.08134 7.19493 7.32087 7.60819 7.78344 7.80339 7.83412 8.07445 8.98131 9.60695 10.70295 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012633 B = 0.002479 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.901366 B =11289.953954 C =13050.172979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.171 4.171 3 C 0.152 3.848 4 N -0.613 5.613 5 C 0.104 3.896 6 C -0.128 4.128 7 C 0.056 3.944 8 H 0.119 0.881 9 O -0.341 6.341 10 C 0.454 3.546 11 O -0.470 6.470 12 C -0.060 4.060 13 C -0.048 4.048 14 C -0.186 4.186 15 C -0.076 4.076 16 C -0.213 4.213 17 C 0.160 3.840 18 O -0.217 6.217 19 C -0.388 4.388 20 H 0.107 0.893 21 C 0.063 3.937 22 N -0.880 5.880 23 Si 0.904 3.096 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.259 1.259 27 C -0.170 4.170 28 C 0.503 3.497 29 O -0.498 6.498 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.107 0.893 42 H 0.112 0.888 43 H 0.134 0.866 44 H 0.279 0.721 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.539 3.391 15.559 31.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.190 4.190 3 C 0.030 3.970 4 N -0.349 5.349 5 C -0.019 4.019 6 C -0.165 4.165 7 C -0.003 4.003 8 H 0.136 0.864 9 O -0.259 6.259 10 C 0.295 3.705 11 O -0.353 6.353 12 C -0.097 4.097 13 C -0.048 4.048 14 C -0.205 4.205 15 C -0.094 4.094 16 C -0.233 4.233 17 C 0.108 3.892 18 O -0.122 6.122 19 C -0.464 4.464 20 H 0.124 0.876 21 C -0.140 4.140 22 N -0.518 5.518 23 Si 0.729 3.271 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.183 1.183 27 C -0.189 4.189 28 C 0.288 3.712 29 O -0.370 6.370 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.129 0.871 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.120 0.880 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.125 0.875 42 H 0.130 0.870 43 H 0.151 0.849 44 H 0.089 0.911 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -27.118 2.785 14.475 30.865 hybrid contribution -0.311 -0.122 -0.676 0.754 sum -27.429 2.662 13.799 30.820 Atomic orbital electron populations 1.23885 0.95567 1.02167 0.99983 1.23357 0.96210 0.99171 1.00287 1.20511 0.91627 0.95489 0.89327 1.48237 1.12418 1.62045 1.12242 1.22175 0.99130 0.99465 0.81151 1.22797 0.92377 1.04035 0.97315 1.23285 0.91129 0.91324 0.94515 0.86356 1.86620 1.21162 1.37221 1.80894 1.24022 0.81183 0.91567 0.73740 1.90766 1.77551 1.25239 1.41745 1.20248 0.89910 0.94258 1.05293 1.18638 0.92696 1.00457 0.93046 1.20429 0.95153 1.07292 0.97624 1.20743 0.95690 0.97622 0.95373 1.21327 1.01764 1.07452 0.92712 1.18996 0.92873 0.93103 0.84233 1.83580 1.31384 1.77424 1.19844 1.20762 0.84504 1.45075 0.96058 0.87610 1.24452 0.95947 0.96081 0.97486 1.69643 1.14645 1.46261 1.21274 0.86200 0.81793 0.79020 0.80055 1.19876 1.20769 1.18288 1.19980 0.95977 1.07971 0.94993 1.21053 0.82181 0.77750 0.90230 1.90822 1.67423 1.42842 1.35957 0.88138 0.88326 0.87088 0.88897 0.89537 0.90256 0.89847 0.88017 0.87425 0.87060 0.86922 0.87490 0.86990 0.84852 0.91088 0.86641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.99 14.32 29.01 0.42 -0.57 16 2 C -0.17 -1.28 9.85 -36.03 -0.35 -1.64 16 3 C 0.15 1.20 6.37 -5.20 -0.03 1.16 16 4 N -0.61 -5.61 2.91 -173.67 -0.51 -6.11 16 5 C 0.10 0.55 7.36 -3.02 -0.02 0.52 16 6 C -0.13 -0.69 6.94 -25.00 -0.17 -0.87 16 7 C 0.06 0.61 3.21 -26.74 -0.09 0.53 16 8 H 0.12 1.41 7.26 -51.93 -0.38 1.04 16 9 O -0.34 -4.12 9.96 -39.25 -0.39 -4.51 16 10 C 0.45 6.79 7.94 36.01 0.29 7.08 16 11 O -0.47 -9.07 15.30 -18.75 -0.29 -9.36 16 12 C -0.06 -0.78 5.94 -29.03 -0.17 -0.95 16 13 C -0.05 -0.85 4.37 -104.65 -0.46 -1.30 16 14 C -0.19 -3.20 9.70 -39.53 -0.38 -3.58 16 15 C -0.08 -1.43 10.04 -39.61 -0.40 -1.83 16 16 C -0.21 -4.80 9.17 -39.39 -0.36 -5.16 16 17 C 0.16 3.89 6.65 -39.11 -0.26 3.63 16 18 O -0.22 -6.00 8.59 0.03 0.00 -6.00 16 19 C -0.39 -11.31 9.95 30.89 0.31 -11.00 16 20 H 0.11 3.12 5.44 -52.49 -0.29 2.84 16 21 C 0.06 1.83 5.49 -17.52 -0.10 1.74 16 22 N -0.88 -26.02 13.96 55.48 0.77 -25.25 16 23 Si 0.90 22.51 28.62 -169.99 -4.86 17.64 16 24 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.26 -6.58 7.11 56.52 0.40 -6.18 16 27 C -0.17 -3.59 9.64 -39.40 -0.38 -3.97 16 28 C 0.50 6.68 7.71 -10.86 -0.08 6.60 16 29 O -0.50 -9.19 17.59 5.56 0.10 -9.09 16 30 H 0.10 0.49 8.06 -52.49 -0.42 0.07 16 31 H 0.10 0.40 7.84 -52.49 -0.41 -0.01 16 32 H 0.11 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.09 0.90 7.92 -51.93 -0.41 0.49 16 34 H 0.09 0.45 7.79 -51.93 -0.40 0.04 16 35 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.11 0.41 8.11 -51.93 -0.42 -0.01 16 39 H 0.11 1.25 8.08 -51.93 -0.42 0.83 16 40 H 0.11 1.06 8.08 -51.93 -0.42 0.64 16 41 H 0.11 1.50 8.06 -52.48 -0.42 1.07 16 42 H 0.11 1.77 8.06 -52.48 -0.42 1.34 16 43 H 0.13 3.12 5.64 -52.49 -0.30 2.82 16 44 H 0.28 7.62 8.31 -40.82 -0.34 7.28 16 45 H 0.12 2.33 8.06 -52.48 -0.42 1.91 16 LS Contribution 392.08 15.07 5.91 5.91 Total: -1.00 -36.98 392.08 -7.48 -44.47 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -5.96 Total: 1.93 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -2.25 Total: -9.61 kcal Atomic # 7 Polarization: -31.63 SS G_CDS: 0.27 Total: -31.36 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -0.58 Total: -28.97 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.86 Total: 17.64 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.98 -7.48 -44.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798643181.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.406 kcal (2) G-P(sol) polarization free energy of solvation -36.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds