Wall clock time and date at job start Wed Apr 1 2020 02:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50699 * 119.99747 * 2 1 4 4 N 1.46495 * 109.46905 * 125.00205 * 3 2 1 5 5 C 1.46766 * 124.34973 * 269.72950 * 4 3 2 6 6 C 1.54665 * 105.38435 * 162.85368 * 5 4 3 7 7 C 1.54632 * 101.68246 * 25.76268 * 6 5 4 8 8 H 1.09007 * 110.48411 * 216.31373 * 7 6 5 9 9 O 1.45199 * 110.59887 * 93.72452 * 7 6 5 10 10 C 1.34229 * 116.99804 * 153.70187 * 9 7 6 11 11 O 1.20826 * 120.00334 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99725 * 179.97438 * 10 9 7 13 13 C 1.50698 * 109.47011 * 180.02562 * 12 10 9 14 14 C 1.38322 * 119.96452 * 269.72305 * 13 12 10 15 15 C 1.38281 * 120.14219 * 179.76492 * 14 13 12 16 16 C 1.38128 * 120.06562 * 0.50835 * 15 14 13 17 17 C 1.38852 * 119.92767 * 359.74772 * 16 15 14 18 18 O 1.35760 * 120.06751 * 179.97438 * 17 16 15 19 19 C 1.34826 * 116.99642 * 354.48169 * 18 17 16 20 20 H 1.07995 * 120.00058 * 5.06801 * 19 18 17 21 21 C 1.38652 * 119.99843 * 185.05623 * 19 18 17 22 22 N 1.31555 * 120.00331 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00031 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47087 * 89.99747 * 23 21 19 25 25 H 1.48505 * 109.47291 * 209.99736 * 23 21 19 26 26 H 1.48499 * 109.47230 * 329.99606 * 23 21 19 27 27 C 1.38074 * 119.97055 * 89.99861 * 13 12 10 28 28 C 1.34421 * 124.34875 * 90.01832 * 4 3 2 29 29 O 1.21275 * 124.94809 * 0.43833 * 28 4 3 30 30 H 1.07998 * 119.99855 * 179.97438 * 1 2 3 31 31 H 1.07995 * 119.99753 * 359.72297 * 1 2 3 32 32 H 1.07993 * 119.99633 * 180.02562 * 2 1 3 33 33 H 1.08994 * 109.47005 * 244.99984 * 3 2 1 34 34 H 1.09002 * 109.47280 * 5.00115 * 3 2 1 35 35 H 1.08998 * 110.23878 * 281.97850 * 5 4 3 36 36 H 1.08999 * 110.24932 * 43.97659 * 5 4 3 37 37 H 1.08998 * 111.19229 * 267.59109 * 6 5 4 38 38 H 1.08997 * 110.85149 * 143.78751 * 6 5 4 39 39 H 1.09000 * 109.46839 * 300.00062 * 12 10 9 40 40 H 1.08990 * 109.47196 * 60.00110 * 12 10 9 41 41 H 1.08006 * 119.92974 * 0.02562 * 14 13 12 42 42 H 1.08004 * 119.96909 * 180.25650 * 15 14 13 43 43 H 1.07996 * 120.03251 * 179.71913 * 16 15 14 44 44 H 0.96996 * 120.00570 * 180.02562 * 22 21 19 45 45 H 1.08004 * 120.03236 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.6618 1.8485 2.4644 6 6 3.7493 1.2815 3.4067 7 6 4.9270 1.0614 2.4291 8 1 5.4820 0.1622 2.6968 9 8 5.8066 2.2165 2.4205 10 6 7.0892 2.0033 2.0869 11 8 7.4643 0.8885 1.8107 12 6 8.0610 3.1547 2.0558 13 6 9.4234 2.6514 1.6540 14 6 10.3178 2.2312 2.6219 15 6 11.5671 1.7641 2.2570 16 6 11.9296 1.7256 0.9247 17 6 11.0359 2.1516 -0.0489 18 8 11.3894 2.1155 -1.3592 19 6 12.6602 1.7641 -1.6408 20 1 13.3215 1.4482 -0.8477 21 6 13.1179 1.8081 -2.9489 22 7 14.3578 1.4648 -3.2239 23 14 11.9741 2.3550 -4.3208 24 1 12.0798 3.8257 -4.4966 25 1 12.3575 1.6765 -5.5850 26 1 10.5758 1.9973 -3.9716 27 6 9.7798 2.6154 0.3205 28 6 4.2628 0.8916 1.0804 29 8 4.7978 0.4264 0.0964 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5399 0.9353 0.0045 32 1 1.8500 -0.9353 -0.0004 33 1 2.6213 1.4026 -0.9313 34 1 1.3586 2.1317 0.0896 35 1 2.6897 2.9381 2.4642 36 1 1.6772 1.4957 2.7712 37 1 3.4316 0.3393 3.8532 38 1 4.0120 2.0068 4.1768 39 1 7.7211 3.8976 1.3342 40 1 8.1182 3.6087 3.0450 41 1 10.0382 2.2641 3.6646 42 1 12.2618 1.4328 3.0148 43 1 12.9071 1.3649 0.6406 44 1 14.6781 1.4959 -4.1389 45 1 9.0826 2.9474 -0.4345 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798643181.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:22 Heat of formation + Delta-G solvation = -108.053845 kcal Electronic energy + Delta-G solvation = -29191.442184 eV Core-core repulsion = 24947.095471 eV Total energy + Delta-G solvation = -4244.346713 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.24843 -41.16141 -40.63421 -38.58907 -37.87528 -37.40688 -35.53266 -34.51927 -33.72480 -32.17989 -31.15750 -29.17977 -28.16729 -27.27049 -27.07787 -23.89336 -23.26161 -22.74651 -21.92500 -21.39265 -20.42120 -19.70497 -19.09723 -18.96208 -18.22857 -17.56986 -17.43105 -16.91162 -16.70142 -16.55738 -16.29085 -15.90368 -15.69241 -15.56923 -15.10573 -14.95035 -14.90810 -14.44966 -14.33455 -14.20842 -14.15175 -14.03318 -13.64068 -13.18945 -13.14365 -13.09088 -12.79625 -12.61310 -12.52842 -12.49511 -12.40370 -12.32926 -12.11914 -11.98283 -11.60380 -11.35492 -10.94253 -10.88810 -10.47122 -9.87731 -9.76704 -9.12232 -8.53612 -6.25991 0.32312 0.64425 0.93271 1.08453 1.19360 1.25843 1.30159 1.47434 1.85943 2.09260 2.24495 2.73855 2.99563 3.08782 3.11183 3.32412 3.57524 3.73856 3.91750 3.93794 4.02066 4.02406 4.07921 4.22768 4.35605 4.41018 4.42741 4.49643 4.57483 4.64460 4.65385 4.68177 4.87392 4.91959 4.96251 5.04003 5.16375 5.27383 5.34881 5.38533 5.57975 5.61232 5.66145 5.71435 5.72434 5.87822 5.92514 6.19968 6.66669 6.80784 6.90161 7.55761 8.58099 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012633 B = 0.002479 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.901366 B =11289.953954 C =13050.172979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.198 4.198 3 C 0.148 3.852 4 N -0.603 5.603 5 C 0.097 3.903 6 C -0.111 4.111 7 C 0.048 3.952 8 H 0.100 0.900 9 O -0.326 6.326 10 C 0.457 3.543 11 O -0.525 6.525 12 C -0.056 4.056 13 C -0.042 4.042 14 C -0.163 4.163 15 C -0.076 4.076 16 C -0.234 4.234 17 C 0.116 3.884 18 O -0.249 6.249 19 C -0.400 4.400 20 H 0.083 0.917 21 C 0.011 3.989 22 N -0.921 5.921 23 Si 0.967 3.033 24 H -0.259 1.259 25 H -0.264 1.264 26 H -0.273 1.273 27 C -0.182 4.182 28 C 0.485 3.515 29 O -0.571 6.571 30 H 0.108 0.892 31 H 0.123 0.877 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.124 0.876 35 H 0.099 0.901 36 H 0.116 0.884 37 H 0.122 0.878 38 H 0.135 0.865 39 H 0.133 0.867 40 H 0.166 0.834 41 H 0.159 0.841 42 H 0.147 0.853 43 H 0.110 0.890 44 H 0.285 0.715 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.985 5.634 19.191 37.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.217 4.217 3 C 0.027 3.973 4 N -0.336 5.336 5 C -0.024 4.024 6 C -0.148 4.148 7 C -0.011 4.011 8 H 0.118 0.882 9 O -0.242 6.242 10 C 0.301 3.699 11 O -0.412 6.412 12 C -0.093 4.093 13 C -0.042 4.042 14 C -0.181 4.181 15 C -0.094 4.094 16 C -0.254 4.254 17 C 0.067 3.933 18 O -0.157 6.157 19 C -0.476 4.476 20 H 0.100 0.900 21 C -0.187 4.187 22 N -0.562 5.562 23 Si 0.790 3.210 24 H -0.184 1.184 25 H -0.189 1.189 26 H -0.198 1.198 27 C -0.201 4.201 28 C 0.271 3.729 29 O -0.450 6.450 30 H 0.126 0.874 31 H 0.141 0.859 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.142 0.858 35 H 0.117 0.883 36 H 0.134 0.866 37 H 0.140 0.860 38 H 0.153 0.847 39 H 0.151 0.849 40 H 0.184 0.816 41 H 0.176 0.824 42 H 0.164 0.836 43 H 0.128 0.872 44 H 0.095 0.905 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -31.642 5.079 18.191 36.850 hybrid contribution 0.784 -0.823 -1.459 1.849 sum -30.857 4.256 16.732 35.359 Atomic orbital electron populations 1.24108 0.94556 1.03681 0.96223 1.23127 0.96938 0.97872 1.03807 1.20644 0.91575 0.97099 0.87938 1.48463 1.11141 1.59853 1.14149 1.22583 1.00526 1.00621 0.78647 1.22954 0.89287 1.06027 0.96546 1.23568 0.92223 0.90441 0.94834 0.88183 1.86600 1.20062 1.37568 1.79993 1.24362 0.82180 0.91097 0.72281 1.90771 1.78621 1.27480 1.44309 1.20411 0.86440 0.93679 1.08772 1.19166 0.95170 0.98398 0.91447 1.21083 0.93595 1.03355 1.00051 1.21173 0.97313 0.96764 0.94156 1.21374 1.00862 1.08547 0.94578 1.19590 0.94769 0.95258 0.83634 1.83521 1.30387 1.79855 1.21934 1.20727 0.85318 1.45521 0.96027 0.89952 1.25236 0.97486 0.96398 0.99593 1.69716 1.16068 1.48212 1.22159 0.85271 0.78734 0.79388 0.77617 1.18405 1.18882 1.19826 1.20292 0.94710 1.08027 0.97096 1.21625 0.83604 0.77332 0.90306 1.90773 1.69310 1.46393 1.38512 0.87385 0.85870 0.89858 0.91894 0.85832 0.88306 0.86634 0.85954 0.84660 0.84921 0.81636 0.82387 0.83561 0.87224 0.90509 0.86637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 14.32 67.77 0.97 -0.25 16 2 C -0.20 -2.82 9.85 25.64 0.25 -2.57 16 3 C 0.15 2.19 6.37 85.63 0.55 2.73 16 4 N -0.60 -10.10 2.91 -821.97 -2.40 -12.50 16 5 C 0.10 0.60 7.36 86.90 0.64 1.24 16 6 C -0.11 -0.75 6.94 31.72 0.22 -0.53 16 7 C 0.05 0.98 3.21 30.59 0.10 1.08 16 8 H 0.10 2.41 7.26 -2.38 -0.02 2.39 16 9 O -0.33 -7.01 9.96 -51.41 -0.51 -7.52 16 10 C 0.46 12.74 7.94 71.24 0.57 13.30 16 11 O -0.52 -20.27 15.30 21.96 0.34 -19.93 16 12 C -0.06 -1.24 5.94 29.10 0.17 -1.07 16 13 C -0.04 -1.37 4.37 -19.88 -0.09 -1.45 16 14 C -0.16 -5.00 9.70 22.30 0.22 -4.78 16 15 C -0.08 -2.75 10.04 22.25 0.22 -2.52 16 16 C -0.23 -11.03 9.17 22.39 0.21 -10.82 16 17 C 0.12 5.96 6.65 22.58 0.15 6.11 16 18 O -0.25 -14.71 8.59 -22.80 -0.20 -14.90 16 19 C -0.40 -24.98 9.95 67.92 0.68 -24.30 16 20 H 0.08 5.34 5.44 -2.91 -0.02 5.32 16 21 C 0.01 0.69 5.49 84.83 0.47 1.16 16 22 N -0.92 -57.11 13.96 21.61 0.30 -56.81 16 23 Si 0.97 48.47 28.62 68.60 1.96 50.43 16 24 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 25 H -0.26 -12.29 7.11 99.48 0.71 -11.59 16 26 H -0.27 -14.17 7.11 99.48 0.71 -13.46 16 27 C -0.18 -7.81 9.64 22.39 0.22 -7.60 16 28 C 0.49 13.10 7.71 87.90 0.68 13.78 16 29 O -0.57 -22.79 17.59 -3.02 -0.05 -22.84 16 30 H 0.11 0.75 8.06 -2.91 -0.02 0.73 16 31 H 0.12 0.45 7.84 -2.91 -0.02 0.42 16 32 H 0.08 1.63 8.06 -2.91 -0.02 1.60 16 33 H 0.06 1.30 7.92 -2.39 -0.02 1.28 16 34 H 0.12 0.86 7.79 -2.39 -0.02 0.85 16 35 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.12 0.08 8.14 -2.39 -0.02 0.06 16 37 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.14 0.25 8.11 -2.39 -0.02 0.23 16 39 H 0.13 2.46 8.08 -2.39 -0.02 2.44 16 40 H 0.17 1.96 8.08 -2.39 -0.02 1.95 16 41 H 0.16 3.36 8.06 -2.91 -0.02 3.33 16 42 H 0.15 4.22 8.06 -2.91 -0.02 4.19 16 43 H 0.11 5.60 5.64 -2.91 -0.02 5.58 16 44 H 0.29 16.19 8.31 -92.71 -0.77 15.42 16 45 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -92.54 392.08 6.66 -85.88 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 1.01 Total: 14.67 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: 6.21 Total: -16.49 kcal Atomic # 7 Polarization: -67.21 SS G_CDS: -2.09 Total: -69.30 kcal Atomic # 8 Polarization: -64.77 SS G_CDS: -0.42 Total: -65.20 kcal Atomic # 14 Polarization: 48.47 SS G_CDS: 1.96 Total: 50.43 kcal Total: -92.54 6.66 -85.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798643181.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.170 kcal (2) G-P(sol) polarization free energy of solvation -92.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds