Wall clock time and date at job start Wed Apr 1 2020 02:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50701 * 119.99829 * 2 1 4 4 N 1.46498 * 109.47271 * 125.00554 * 3 2 1 5 5 C 1.46763 * 124.35404 * 89.99385 * 4 3 2 6 6 C 1.54479 * 105.47385 * 163.00728 * 5 4 3 7 7 C 1.54628 * 101.80023 * 25.39935 * 6 5 4 8 8 H 1.08996 * 110.48591 * 93.89617 * 7 6 5 9 9 O 1.45200 * 110.49076 * 216.54536 * 7 6 5 10 10 C 1.34222 * 117.00120 * 210.00303 * 9 7 6 11 11 O 1.20827 * 120.00152 * 359.97438 * 10 9 7 12 12 C 1.50708 * 120.00126 * 179.97438 * 10 9 7 13 13 C 1.50700 * 109.47273 * 179.97438 * 12 10 9 14 14 C 1.38322 * 119.96417 * 89.99638 * 13 12 10 15 15 C 1.38279 * 120.13527 * 179.97438 * 14 13 12 16 16 C 1.38120 * 120.06935 * 359.97438 * 15 14 13 17 17 C 1.38851 * 119.93232 * 0.02562 * 16 15 14 18 18 O 1.35749 * 120.06943 * 180.02562 * 17 16 15 19 19 C 1.34837 * 117.00399 * 354.46284 * 18 17 16 20 20 H 1.07999 * 119.99244 * 5.05788 * 19 18 17 21 21 C 1.38652 * 120.00174 * 185.05832 * 19 18 17 22 22 N 1.31559 * 120.00156 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99798 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47707 * 59.99392 * 23 21 19 25 25 H 1.48502 * 109.47142 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.46765 * 299.99622 * 23 21 19 27 27 C 1.38072 * 119.96478 * 269.73045 * 13 12 10 28 28 C 1.34428 * 124.34351 * 270.02383 * 4 3 2 29 29 O 1.21279 * 124.94242 * 0.36000 * 28 4 3 30 30 H 1.07998 * 120.00123 * 180.02562 * 1 2 3 31 31 H 1.08000 * 120.00078 * 359.97438 * 1 2 3 32 32 H 1.07996 * 120.00067 * 179.97438 * 2 1 3 33 33 H 1.08995 * 109.47138 * 4.99778 * 3 2 1 34 34 H 1.09003 * 109.47036 * 244.99996 * 3 2 1 35 35 H 1.09002 * 110.24338 * 44.00770 * 5 4 3 36 36 H 1.08999 * 110.24658 * 282.00843 * 5 4 3 37 37 H 1.08995 * 110.97125 * 143.53735 * 6 5 4 38 38 H 1.09008 * 110.96859 * 267.26343 * 6 5 4 39 39 H 1.08998 * 109.46661 * 299.99278 * 12 10 9 40 40 H 1.08996 * 109.46883 * 59.99538 * 12 10 9 41 41 H 1.08000 * 119.93674 * 359.97438 * 14 13 12 42 42 H 1.08002 * 119.96717 * 180.02562 * 15 14 13 43 43 H 1.08006 * 120.03532 * 180.02562 * 16 15 14 44 44 H 0.96995 * 119.99578 * 180.02562 * 22 21 19 45 45 H 1.08005 * 120.03389 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3319 1.1313 5 6 4.3792 0.8508 1.0759 6 6 5.0779 1.4631 2.3101 7 6 3.8865 1.6841 3.2707 8 1 3.7733 0.8316 3.9404 9 8 4.0663 2.9084 4.0303 10 6 3.5287 2.9474 5.2596 11 8 2.9273 1.9904 5.6866 12 6 3.6752 4.1848 6.1072 13 6 2.9866 3.9716 7.4306 14 6 3.6885 3.4387 8.4967 15 6 3.0603 3.2421 9.7128 16 6 1.7295 3.5780 9.8665 17 6 1.0221 4.1132 8.7982 18 8 -0.2859 4.4449 8.9464 19 6 -0.8698 4.1243 10.1187 20 1 -0.2795 3.7007 10.9178 21 6 -2.2278 4.3384 10.2983 22 7 -2.9467 4.8549 9.3250 23 14 -3.0365 3.8949 11.9227 24 1 -2.4029 4.6705 13.0192 25 1 -4.4842 4.2195 11.8599 26 1 -2.8651 2.4425 12.1806 27 6 1.6572 4.3136 7.5793 28 6 2.6879 1.7999 2.3538 29 8 1.6087 2.2505 2.6751 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3585 2.1316 0.0895 34 1 2.6212 1.4026 -0.9314 35 1 4.8613 1.1940 0.1605 36 1 4.4030 -0.2376 1.1303 37 1 5.7985 0.7654 2.7365 38 1 5.5563 2.4096 2.0579 39 1 4.7330 4.3864 6.2760 40 1 3.2211 5.0325 5.5941 41 1 4.7294 3.1756 8.3791 42 1 3.6111 2.8261 10.5435 43 1 1.2394 3.4246 10.8167 44 1 -3.8967 5.0050 9.4508 45 1 1.1109 4.7341 6.7478 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798643182.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:26 Heat of formation + Delta-G solvation = -86.594561 kcal Electronic energy + Delta-G solvation = -29158.569527 eV Core-core repulsion = 24915.153358 eV Total energy + Delta-G solvation = -4243.416169 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.18996 -39.89142 -38.87155 -36.87668 -36.74626 -36.12005 -34.87030 -32.43484 -32.06087 -31.35641 -29.22246 -28.00419 -27.14075 -26.33538 -25.19876 -22.61120 -22.06547 -21.53939 -20.58636 -20.26431 -19.69864 -17.90249 -17.66666 -17.31686 -16.92062 -16.90232 -16.20222 -15.88368 -15.23677 -15.00833 -14.76562 -14.53471 -14.36195 -14.09822 -13.94606 -13.71920 -13.57968 -13.36906 -13.28469 -12.87272 -12.68778 -12.59222 -12.36767 -12.10329 -11.96157 -11.64565 -11.59114 -11.41013 -11.40340 -11.23675 -10.82673 -10.75508 -10.59260 -10.41419 -10.30099 -10.02955 -9.59597 -9.29243 -9.11089 -8.77758 -8.06718 -7.17934 -6.37636 -3.96928 1.76301 1.88776 2.22840 2.39417 2.42857 2.71869 3.01583 3.17320 3.19722 3.21773 3.90160 3.97284 4.02197 4.36011 4.46884 4.57303 4.63841 4.72581 4.82834 4.91471 4.95191 5.00431 5.10567 5.20013 5.25438 5.29915 5.34926 5.49141 5.53431 5.58847 5.67129 5.78506 5.95762 6.10930 6.20534 6.25259 6.36182 6.38074 6.39452 6.69636 6.72516 6.95251 7.11166 7.27865 7.39704 7.48702 7.83934 7.86318 7.92311 8.06747 9.07446 9.78181 10.80468 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012117 B = 0.002437 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.223470 B =11485.862958 C =13295.211703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.188 4.188 3 C 0.155 3.845 4 N -0.617 5.617 5 C 0.105 3.895 6 C -0.126 4.126 7 C 0.055 3.945 8 H 0.123 0.877 9 O -0.339 6.339 10 C 0.460 3.540 11 O -0.478 6.478 12 C -0.061 4.061 13 C -0.045 4.045 14 C -0.195 4.195 15 C -0.075 4.075 16 C -0.228 4.228 17 C 0.154 3.846 18 O -0.178 6.178 19 C -0.392 4.392 20 H 0.091 0.909 21 C 0.039 3.961 22 N -0.863 5.863 23 Si 0.941 3.059 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.169 4.169 28 C 0.506 3.494 29 O -0.498 6.498 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.127 0.873 44 H 0.270 0.730 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.447 -7.753 -18.585 27.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.207 4.207 3 C 0.034 3.966 4 N -0.354 5.354 5 C -0.018 4.018 6 C -0.164 4.164 7 C -0.004 4.004 8 H 0.140 0.860 9 O -0.257 6.257 10 C 0.302 3.698 11 O -0.361 6.361 12 C -0.098 4.098 13 C -0.045 4.045 14 C -0.214 4.214 15 C -0.093 4.093 16 C -0.247 4.247 17 C 0.101 3.899 18 O -0.081 6.081 19 C -0.468 4.468 20 H 0.109 0.891 21 C -0.165 4.165 22 N -0.498 5.498 23 Si 0.766 3.234 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.188 4.188 28 C 0.291 3.709 29 O -0.371 6.371 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.128 0.872 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.123 0.877 42 H 0.127 0.873 43 H 0.145 0.855 44 H 0.080 0.920 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 17.195 -7.621 -18.525 26.400 hybrid contribution -0.507 -0.616 0.800 1.130 sum 16.688 -8.237 -17.725 25.700 Atomic orbital electron populations 1.23975 0.95913 1.02447 0.97590 1.23227 0.96414 0.98598 1.02473 1.20496 0.91868 0.96299 0.87900 1.48149 1.13246 1.62885 1.11109 1.22124 0.81023 0.99454 0.99230 1.22773 0.96310 1.03684 0.93591 1.23273 0.94982 0.89260 0.92877 0.85992 1.86624 1.71510 1.38629 1.28905 1.23959 0.75679 0.90461 0.79731 1.90727 1.36842 1.36995 1.71579 1.20257 1.03533 0.93610 0.92396 1.18648 0.93323 1.00049 0.92503 1.20350 0.99130 1.08127 0.93834 1.20673 0.94172 0.98011 0.96462 1.21196 0.95154 1.08307 1.00076 1.19256 0.85843 0.91977 0.92860 1.83984 1.17772 1.68760 1.37588 1.21273 0.92237 1.43504 0.89804 0.89145 1.25285 0.95226 0.96670 0.99349 1.70038 1.07502 1.40440 1.31785 0.85787 0.78290 0.79162 0.80202 1.19521 1.20301 1.19523 1.20000 0.93892 1.08628 0.96306 1.20983 0.89303 0.77549 0.83069 1.90812 1.25253 1.43772 1.77215 0.88099 0.88092 0.87203 0.89390 0.89307 0.89488 0.90566 0.88016 0.88148 0.87073 0.86964 0.87742 0.87342 0.85519 0.92010 0.86562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 14.32 29.02 0.42 -1.03 16 2 C -0.19 -1.58 9.85 -36.02 -0.35 -1.94 16 3 C 0.16 1.28 6.37 -5.19 -0.03 1.25 16 4 N -0.62 -5.88 2.92 -173.76 -0.51 -6.38 16 5 C 0.10 0.55 7.35 -3.12 -0.02 0.52 16 6 C -0.13 -0.75 6.92 -25.10 -0.17 -0.93 16 7 C 0.06 0.64 3.29 -26.71 -0.09 0.56 16 8 H 0.12 1.51 7.14 -51.93 -0.37 1.14 16 9 O -0.34 -4.62 9.95 -42.11 -0.42 -5.04 16 10 C 0.46 7.52 7.95 36.01 0.29 7.81 16 11 O -0.48 -9.72 15.24 -18.75 -0.29 -10.01 16 12 C -0.06 -0.88 5.94 -29.03 -0.17 -1.05 16 13 C -0.04 -0.85 4.37 -104.65 -0.46 -1.31 16 14 C -0.20 -3.55 9.70 -39.54 -0.38 -3.94 16 15 C -0.07 -1.45 10.04 -39.61 -0.40 -1.85 16 16 C -0.23 -5.23 9.17 -39.40 -0.36 -5.59 16 17 C 0.15 3.97 6.65 -39.11 -0.26 3.71 16 18 O -0.18 -5.34 9.76 0.03 0.00 -5.33 16 19 C -0.39 -11.43 9.49 30.89 0.29 -11.13 16 20 H 0.09 2.43 5.20 -52.49 -0.27 2.15 16 21 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 22 N -0.86 -26.31 13.67 55.48 0.76 -25.55 16 23 Si 0.94 21.28 29.55 -169.99 -5.02 16.25 16 24 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 27 C -0.17 -3.87 9.64 -39.40 -0.38 -4.25 16 28 C 0.51 7.10 7.72 -10.82 -0.08 7.02 16 29 O -0.50 -9.63 17.59 1.59 0.03 -9.61 16 30 H 0.10 0.78 8.06 -52.49 -0.42 0.36 16 31 H 0.10 0.94 7.84 -52.49 -0.41 0.53 16 32 H 0.11 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.09 0.87 7.58 -51.93 -0.39 0.47 16 34 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 36 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.10 0.53 8.12 -51.92 -0.42 0.11 16 39 H 0.11 1.19 8.09 -51.93 -0.42 0.77 16 40 H 0.11 1.47 8.08 -51.93 -0.42 1.05 16 41 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 43 H 0.13 2.87 5.64 -52.48 -0.30 2.58 16 44 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 45 H 0.12 2.64 8.06 -52.48 -0.42 2.22 16 LS Contribution 393.11 15.07 5.92 5.92 Total: -1.00 -38.76 393.11 -7.74 -46.50 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -5.95 Total: 4.37 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -2.27 Total: -11.13 kcal Atomic # 7 Polarization: -32.19 SS G_CDS: 0.25 Total: -31.94 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -0.68 Total: -29.99 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -38.76 -7.74 -46.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798643182.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.092 kcal (2) G-P(sol) polarization free energy of solvation -38.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds