Wall clock time and date at job start Wed Apr 1 2020 02:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50701 * 119.99829 * 2 1 4 4 N 1.46498 * 109.47271 * 125.00554 * 3 2 1 5 5 C 1.46763 * 124.35404 * 89.99385 * 4 3 2 6 6 C 1.54479 * 105.47385 * 163.00728 * 5 4 3 7 7 C 1.54628 * 101.80023 * 25.39935 * 6 5 4 8 8 H 1.08996 * 110.48591 * 93.89617 * 7 6 5 9 9 O 1.45200 * 110.49076 * 216.54536 * 7 6 5 10 10 C 1.34222 * 117.00120 * 210.00303 * 9 7 6 11 11 O 1.20827 * 120.00152 * 359.97438 * 10 9 7 12 12 C 1.50708 * 120.00126 * 179.97438 * 10 9 7 13 13 C 1.50700 * 109.47273 * 179.97438 * 12 10 9 14 14 C 1.38322 * 119.96417 * 89.99638 * 13 12 10 15 15 C 1.38279 * 120.13527 * 179.97438 * 14 13 12 16 16 C 1.38120 * 120.06935 * 359.97438 * 15 14 13 17 17 C 1.38851 * 119.93232 * 0.02562 * 16 15 14 18 18 O 1.35749 * 120.06943 * 180.02562 * 17 16 15 19 19 C 1.34837 * 117.00399 * 354.46284 * 18 17 16 20 20 H 1.07999 * 119.99244 * 5.05788 * 19 18 17 21 21 C 1.38652 * 120.00174 * 185.05832 * 19 18 17 22 22 N 1.31559 * 120.00156 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99798 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47707 * 59.99392 * 23 21 19 25 25 H 1.48502 * 109.47142 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.46765 * 299.99622 * 23 21 19 27 27 C 1.38072 * 119.96478 * 269.73045 * 13 12 10 28 28 C 1.34428 * 124.34351 * 270.02383 * 4 3 2 29 29 O 1.21279 * 124.94242 * 0.36000 * 28 4 3 30 30 H 1.07998 * 120.00123 * 180.02562 * 1 2 3 31 31 H 1.08000 * 120.00078 * 359.97438 * 1 2 3 32 32 H 1.07996 * 120.00067 * 179.97438 * 2 1 3 33 33 H 1.08995 * 109.47138 * 4.99778 * 3 2 1 34 34 H 1.09003 * 109.47036 * 244.99996 * 3 2 1 35 35 H 1.09002 * 110.24338 * 44.00770 * 5 4 3 36 36 H 1.08999 * 110.24658 * 282.00843 * 5 4 3 37 37 H 1.08995 * 110.97125 * 143.53735 * 6 5 4 38 38 H 1.09008 * 110.96859 * 267.26343 * 6 5 4 39 39 H 1.08998 * 109.46661 * 299.99278 * 12 10 9 40 40 H 1.08996 * 109.46883 * 59.99538 * 12 10 9 41 41 H 1.08000 * 119.93674 * 359.97438 * 14 13 12 42 42 H 1.08002 * 119.96717 * 180.02562 * 15 14 13 43 43 H 1.08006 * 120.03532 * 180.02562 * 16 15 14 44 44 H 0.96995 * 119.99578 * 180.02562 * 22 21 19 45 45 H 1.08005 * 120.03389 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3319 1.1313 5 6 4.3792 0.8508 1.0759 6 6 5.0779 1.4631 2.3101 7 6 3.8865 1.6841 3.2707 8 1 3.7733 0.8316 3.9404 9 8 4.0663 2.9084 4.0303 10 6 3.5287 2.9474 5.2596 11 8 2.9273 1.9904 5.6866 12 6 3.6752 4.1848 6.1072 13 6 2.9866 3.9716 7.4306 14 6 3.6885 3.4387 8.4967 15 6 3.0603 3.2421 9.7128 16 6 1.7295 3.5780 9.8665 17 6 1.0221 4.1132 8.7982 18 8 -0.2859 4.4449 8.9464 19 6 -0.8698 4.1243 10.1187 20 1 -0.2795 3.7007 10.9178 21 6 -2.2278 4.3384 10.2983 22 7 -2.9467 4.8549 9.3250 23 14 -3.0365 3.8949 11.9227 24 1 -2.4029 4.6705 13.0192 25 1 -4.4842 4.2195 11.8599 26 1 -2.8651 2.4425 12.1806 27 6 1.6572 4.3136 7.5793 28 6 2.6879 1.7999 2.3538 29 8 1.6087 2.2505 2.6751 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3585 2.1316 0.0895 34 1 2.6212 1.4026 -0.9314 35 1 4.8613 1.1940 0.1605 36 1 4.4030 -0.2376 1.1303 37 1 5.7985 0.7654 2.7365 38 1 5.5563 2.4096 2.0579 39 1 4.7330 4.3864 6.2760 40 1 3.2211 5.0325 5.5941 41 1 4.7294 3.1756 8.3791 42 1 3.6111 2.8261 10.5435 43 1 1.2394 3.4246 10.8167 44 1 -3.8967 5.0050 9.4508 45 1 1.1109 4.7341 6.7478 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798643182.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:25 Heat of formation + Delta-G solvation = -112.592983 kcal Electronic energy + Delta-G solvation = -29159.696903 eV Core-core repulsion = 24915.153358 eV Total energy + Delta-G solvation = -4244.543545 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.21688 -41.12500 -40.56793 -38.47857 -37.80202 -37.46559 -35.60568 -34.38478 -33.65927 -32.13967 -30.96766 -29.16587 -28.21183 -27.35966 -27.04118 -23.75267 -23.24184 -22.94678 -22.02572 -21.22636 -20.53575 -19.55049 -19.05034 -18.84064 -18.21204 -17.83421 -17.27863 -17.05048 -16.74281 -16.28366 -16.16156 -16.01623 -15.58817 -15.51283 -15.17281 -14.92559 -14.81981 -14.53394 -14.39378 -14.17188 -14.09149 -13.65092 -13.57060 -13.18268 -13.12772 -12.98786 -12.81144 -12.65848 -12.54149 -12.43238 -12.38004 -12.26286 -12.15332 -11.99291 -11.64444 -11.24266 -10.95676 -10.82265 -10.42844 -9.88187 -9.73131 -9.02675 -8.48931 -6.18424 0.37229 0.70998 0.99676 1.08471 1.19087 1.31647 1.43872 1.49332 1.76107 2.11034 2.16370 2.81408 3.11215 3.14142 3.35362 3.36986 3.61002 3.78630 3.85529 3.91817 4.05627 4.05962 4.07373 4.26217 4.32034 4.35126 4.38579 4.52074 4.56537 4.64161 4.67443 4.70175 4.88015 4.90826 4.97898 5.04076 5.09234 5.23329 5.32352 5.40878 5.55342 5.59989 5.66240 5.67206 5.70104 5.92450 5.99794 6.19243 6.65439 6.91676 6.94828 7.76629 8.74793 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012117 B = 0.002437 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.223470 B =11485.862958 C =13295.211703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.183 4.183 3 C 0.148 3.852 4 N -0.606 5.606 5 C 0.099 3.901 6 C -0.109 4.109 7 C 0.044 3.956 8 H 0.111 0.889 9 O -0.331 6.331 10 C 0.464 3.536 11 O -0.529 6.529 12 C -0.060 4.060 13 C -0.038 4.038 14 C -0.172 4.172 15 C -0.071 4.071 16 C -0.241 4.241 17 C 0.110 3.890 18 O -0.236 6.236 19 C -0.416 4.416 20 H 0.103 0.897 21 C -0.027 4.027 22 N -0.924 5.924 23 Si 1.022 2.978 24 H -0.252 1.252 25 H -0.271 1.271 26 H -0.258 1.258 27 C -0.194 4.194 28 C 0.487 3.513 29 O -0.573 6.573 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.130 0.870 33 H 0.061 0.939 34 H 0.132 0.868 35 H 0.125 0.875 36 H 0.099 0.901 37 H 0.134 0.866 38 H 0.113 0.887 39 H 0.167 0.833 40 H 0.124 0.876 41 H 0.158 0.842 42 H 0.153 0.847 43 H 0.121 0.879 44 H 0.273 0.727 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.692 -9.485 -19.127 31.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.202 4.202 3 C 0.027 3.973 4 N -0.340 5.340 5 C -0.022 4.022 6 C -0.146 4.146 7 C -0.014 4.014 8 H 0.129 0.871 9 O -0.247 6.247 10 C 0.308 3.692 11 O -0.416 6.416 12 C -0.096 4.096 13 C -0.038 4.038 14 C -0.190 4.190 15 C -0.089 4.089 16 C -0.260 4.260 17 C 0.060 3.940 18 O -0.143 6.143 19 C -0.492 4.492 20 H 0.121 0.879 21 C -0.224 4.224 22 N -0.563 5.563 23 Si 0.841 3.159 24 H -0.176 1.176 25 H -0.195 1.195 26 H -0.183 1.183 27 C -0.213 4.213 28 C 0.273 3.727 29 O -0.452 6.452 30 H 0.129 0.871 31 H 0.105 0.895 32 H 0.148 0.852 33 H 0.079 0.921 34 H 0.149 0.851 35 H 0.143 0.857 36 H 0.117 0.883 37 H 0.153 0.847 38 H 0.132 0.868 39 H 0.184 0.816 40 H 0.142 0.858 41 H 0.175 0.825 42 H 0.170 0.830 43 H 0.139 0.861 44 H 0.082 0.918 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 22.569 -9.374 -19.137 31.040 hybrid contribution -1.771 -0.165 0.718 1.918 sum 20.798 -9.539 -18.419 29.374 Atomic orbital electron populations 1.24085 0.96652 1.02389 0.98941 1.23420 0.96224 0.99375 1.01199 1.20686 0.92123 0.95372 0.89072 1.48330 1.15178 1.60789 1.09692 1.22587 0.78200 1.00855 1.00560 1.22941 0.94429 1.05328 0.91917 1.23680 0.96890 0.87858 0.93001 0.87086 1.86598 1.70467 1.39823 1.27765 1.24218 0.74516 0.90073 0.80442 1.90719 1.39072 1.38969 1.72876 1.20412 1.06275 0.93141 0.89820 1.19122 0.91649 0.97829 0.95233 1.21034 1.01268 1.04331 0.92404 1.21190 0.92598 0.96547 0.98528 1.21352 0.96942 1.08658 0.99062 1.19854 0.85134 0.93998 0.94991 1.83947 1.20159 1.71678 1.38552 1.21839 0.93151 1.43951 0.90270 0.87935 1.26697 0.95495 0.96245 1.03924 1.70206 1.07940 1.43258 1.34868 0.84608 0.77109 0.79423 0.74775 1.17628 1.19545 1.18285 1.20229 0.95972 1.09973 0.95140 1.21603 0.89026 0.77193 0.84858 1.90770 1.28074 1.47472 1.78844 0.87102 0.89500 0.85196 0.92051 0.85052 0.85709 0.88275 0.84739 0.86817 0.81596 0.85797 0.82468 0.82973 0.86100 0.91848 0.88371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.42 14.32 67.78 0.97 -2.45 16 2 C -0.18 -2.92 9.85 25.65 0.25 -2.67 16 3 C 0.15 2.27 6.37 85.63 0.55 2.81 16 4 N -0.61 -10.43 2.92 -822.23 -2.40 -12.83 16 5 C 0.10 0.57 7.35 86.83 0.64 1.21 16 6 C -0.11 -0.82 6.92 31.65 0.22 -0.60 16 7 C 0.04 0.97 3.29 30.61 0.10 1.07 16 8 H 0.11 2.68 7.14 -2.39 -0.02 2.67 16 9 O -0.33 -8.44 9.95 -48.60 -0.48 -8.92 16 10 C 0.46 14.64 7.95 71.24 0.57 15.21 16 11 O -0.53 -21.74 15.24 21.96 0.33 -21.40 16 12 C -0.06 -1.58 5.94 29.10 0.17 -1.41 16 13 C -0.04 -1.39 4.37 -19.88 -0.09 -1.48 16 14 C -0.17 -5.58 9.70 22.30 0.22 -5.37 16 15 C -0.07 -2.55 10.04 22.25 0.22 -2.32 16 16 C -0.24 -11.26 9.17 22.39 0.21 -11.05 16 17 C 0.11 6.04 6.65 22.58 0.15 6.19 16 18 O -0.24 -15.45 9.76 -22.79 -0.22 -15.67 16 19 C -0.42 -25.86 9.49 67.92 0.64 -25.22 16 20 H 0.10 5.80 5.20 -2.91 -0.02 5.78 16 21 C -0.03 -1.61 5.49 84.83 0.47 -1.15 16 22 N -0.92 -60.34 13.67 21.61 0.30 -60.04 16 23 Si 1.02 45.25 29.55 68.60 2.03 47.27 16 24 H -0.25 -10.30 7.11 99.48 0.71 -9.60 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 26 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 27 C -0.19 -9.35 9.64 22.39 0.22 -9.13 16 28 C 0.49 13.81 7.72 87.92 0.68 14.49 16 29 O -0.57 -23.85 17.59 0.77 0.01 -23.84 16 30 H 0.11 1.78 8.06 -2.91 -0.02 1.75 16 31 H 0.09 1.82 7.84 -2.91 -0.02 1.80 16 32 H 0.13 1.54 8.06 -2.91 -0.02 1.52 16 33 H 0.06 1.28 7.58 -2.39 -0.02 1.27 16 34 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.12 -0.08 8.14 -2.39 -0.02 -0.10 16 36 H 0.10 0.23 8.14 -2.39 -0.02 0.22 16 37 H 0.13 0.21 8.14 -2.39 -0.02 0.19 16 38 H 0.11 0.63 8.12 -2.38 -0.02 0.61 16 39 H 0.17 2.59 8.09 -2.39 -0.02 2.57 16 40 H 0.12 3.06 8.08 -2.39 -0.02 3.04 16 41 H 0.16 3.57 8.06 -2.91 -0.02 3.54 16 42 H 0.15 4.16 8.06 -2.91 -0.02 4.13 16 43 H 0.12 5.65 5.64 -2.91 -0.02 5.64 16 44 H 0.27 16.28 8.31 -92.71 -0.77 15.51 16 45 H 0.10 4.92 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -98.61 393.11 6.75 -91.86 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 1.01 Total: 25.43 kcal Atomic # 6 Polarization: -28.04 SS G_CDS: 6.18 Total: -21.86 kcal Atomic # 7 Polarization: -70.77 SS G_CDS: -2.10 Total: -72.87 kcal Atomic # 8 Polarization: -69.48 SS G_CDS: -0.36 Total: -69.83 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -98.61 6.75 -91.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798643182.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.737 kcal (2) G-P(sol) polarization free energy of solvation -98.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds