Wall clock time and date at job start Wed Apr 1 2020 03:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46491 * 109.47289 * 2 1 4 4 C 1.46500 * 119.99801 * 269.99810 * 3 2 1 5 5 C 1.50703 * 109.47362 * 270.00009 * 4 3 2 6 6 H 1.08008 * 119.99752 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00291 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00007 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 120.00048 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47040 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47062 * 119.99496 * 9 7 5 12 12 H 1.48494 * 109.46896 * 239.99157 * 9 7 5 13 13 C 1.34776 * 120.00452 * 90.00236 * 3 2 1 14 14 O 1.21274 * 120.00467 * 180.02562 * 13 3 2 15 15 C 1.50704 * 119.99643 * 359.97438 * 13 3 2 16 16 O 1.45196 * 109.47016 * 180.02562 * 15 13 3 17 17 C 1.34234 * 116.99938 * 179.97438 * 16 15 13 18 18 O 1.20822 * 119.99973 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.00068 * 179.97438 * 17 16 15 20 20 C 1.50697 * 109.47266 * 180.02562 * 19 17 16 21 21 C 1.33993 * 126.90420 * 265.02210 * 20 19 17 22 22 O 1.34448 * 110.15516 * 179.97438 * 21 20 19 23 23 C 1.34805 * 110.88700 * 0.02562 * 22 21 20 24 24 C 1.38948 * 133.49264 * 180.02562 * 23 22 21 25 25 C 1.37844 * 119.81737 * 179.97438 * 24 23 22 26 26 C 1.38748 * 120.68488 * 359.97438 * 25 24 23 27 27 C 1.36735 * 120.41744 * 359.97438 * 26 25 24 28 28 C 1.39409 * 119.71652 * 359.76340 * 27 26 25 29 29 H 1.08998 * 109.47522 * 300.00160 * 1 2 3 30 30 H 1.09002 * 109.47121 * 60.00199 * 1 2 3 31 31 H 1.09002 * 109.47127 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47240 * 239.99518 * 2 1 3 33 33 H 1.09003 * 109.46951 * 120.00329 * 2 1 3 34 34 H 1.08996 * 109.47402 * 29.99639 * 4 3 2 35 35 H 1.08999 * 109.47280 * 150.00267 * 4 3 2 36 36 H 0.97001 * 120.00168 * 180.02562 * 8 7 5 37 37 H 1.08996 * 109.46943 * 60.00331 * 15 13 3 38 38 H 1.08999 * 109.47285 * 300.00471 * 15 13 3 39 39 H 1.09004 * 109.46932 * 300.00373 * 19 17 16 40 40 H 1.08997 * 109.47392 * 59.99712 * 19 17 16 41 41 H 1.08001 * 124.92097 * 359.95797 * 21 20 19 42 42 H 1.08002 * 120.09254 * 359.96896 * 24 23 22 43 43 H 1.07997 * 119.66085 * 179.97438 * 25 24 23 44 44 H 1.07997 * 119.78740 * 179.97438 * 26 25 24 45 45 H 1.08005 * 120.14117 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0717 -1.2687 5 6 3.6858 1.8348 -1.7038 6 1 4.3429 1.2307 -1.0957 7 6 4.1495 2.3902 -2.8775 8 7 3.3495 3.1263 -3.6176 9 14 5.9136 2.0960 -3.4170 10 1 6.6009 1.2400 -2.4170 11 1 5.9205 1.4177 -4.7381 12 1 6.6216 3.3968 -3.5248 13 6 2.2430 2.0165 1.1671 14 8 2.6469 3.1600 1.1671 15 6 1.9913 1.3063 2.4723 16 8 2.3055 2.1960 3.5759 17 6 2.1335 1.7127 4.8163 18 8 1.7341 0.5834 4.9746 19 6 2.4396 2.5782 6.0114 20 6 2.1654 1.8046 7.2753 21 6 1.0387 1.8214 8.0005 22 8 1.1587 1.0047 9.0617 23 6 2.3711 0.4156 9.0802 24 6 2.9814 -0.4899 9.9394 25 6 4.2665 -0.9180 9.6839 26 6 4.9600 -0.4543 8.5752 27 6 4.3772 0.4362 7.7168 28 6 3.0762 0.8763 7.9558 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.5818 1.6875 -2.0284 35 1 2.0956 3.1409 -1.1385 36 1 3.6756 3.5167 -4.4435 37 1 2.6212 0.4186 2.5302 38 1 0.9433 1.0125 2.5299 39 1 3.4885 2.8736 5.9869 40 1 1.8109 3.4682 5.9861 41 1 0.1615 2.4063 7.7665 42 1 2.4503 -0.8573 10.8051 43 1 4.7386 -1.6215 10.3537 44 1 5.9664 -0.7990 8.3892 45 1 4.9210 0.7939 6.8548 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000803720495.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:36 Heat of formation + Delta-G solvation = -87.583534 kcal Electronic energy + Delta-G solvation = -29064.024095 eV Core-core repulsion = 24820.565041 eV Total energy + Delta-G solvation = -4243.459054 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.77634 -40.52980 -38.96822 -38.13863 -36.48916 -35.32538 -34.30641 -32.86255 -30.98256 -30.37714 -30.18457 -29.37954 -28.17528 -26.42708 -23.63386 -23.11995 -22.81835 -22.60263 -21.70880 -20.09205 -18.69465 -17.89228 -17.67765 -17.36979 -16.75149 -16.54530 -16.44831 -16.30310 -15.99145 -15.78709 -15.18052 -14.71773 -14.43015 -14.23197 -14.09431 -13.73632 -13.49561 -13.28381 -13.10913 -12.88830 -12.57580 -12.49182 -12.45750 -12.13804 -12.07956 -11.91873 -11.64564 -11.26004 -11.19134 -10.95528 -10.88433 -10.70178 -10.62996 -10.54124 -10.25084 -10.16766 -9.66426 -9.02224 -8.91912 -8.48084 -8.47003 -7.77571 -6.07875 -4.12708 0.61734 1.07875 1.84380 2.13072 2.47708 2.64068 3.22824 3.28147 3.36053 3.40295 3.44581 3.88371 4.11278 4.17598 4.41850 4.50432 4.64908 4.69153 4.83160 4.86128 5.02470 5.08134 5.13363 5.15690 5.18891 5.19886 5.26947 5.28320 5.35170 5.56645 5.58666 5.71124 5.90766 5.95828 5.97985 6.07990 6.17041 6.17102 6.32617 6.36575 6.42715 6.85198 6.97587 7.37358 7.45112 7.69211 7.88332 8.18244 8.27438 8.82381 8.97256 9.52470 11.00325 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016201 B = 0.002136 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.861246 B =13102.953259 C =13820.089615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.592 5.592 4 C 0.247 3.753 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.507 3.493 14 O -0.519 6.519 15 C 0.050 3.950 16 O -0.329 6.329 17 C 0.458 3.542 18 O -0.503 6.503 19 C -0.039 4.039 20 C -0.170 4.170 21 C 0.029 3.971 22 O -0.191 6.191 23 C 0.050 3.950 24 C -0.107 4.107 25 C -0.096 4.096 26 C -0.134 4.134 27 C -0.069 4.069 28 C -0.113 4.113 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.036 0.964 35 H 0.045 0.955 36 H 0.263 0.737 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.210 0.790 42 H 0.131 0.869 43 H 0.134 0.866 44 H 0.130 0.870 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.787 -6.957 25.407 26.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.326 5.326 4 C 0.129 3.871 5 C -0.566 4.566 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.291 3.709 14 O -0.395 6.395 15 C -0.027 4.027 16 O -0.244 6.244 17 C 0.300 3.700 18 O -0.390 6.390 19 C -0.077 4.077 20 C -0.172 4.172 21 C -0.036 4.036 22 O -0.092 6.092 23 C 0.003 3.997 24 C -0.125 4.125 25 C -0.114 4.114 26 C -0.152 4.152 27 C -0.087 4.087 28 C -0.113 4.113 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.226 0.774 42 H 0.149 0.851 43 H 0.152 0.848 44 H 0.148 0.852 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.894 -6.629 25.421 26.558 hybrid contribution 0.888 -0.359 -0.695 1.183 sum -3.006 -6.988 24.725 25.869 Atomic orbital electron populations 1.22231 0.96525 1.01701 1.02399 1.21507 0.93759 0.83958 1.03028 1.48211 1.63792 1.13403 1.07156 1.19338 0.96508 0.93712 0.77567 1.21460 0.96823 1.31997 1.06338 0.92358 1.24937 0.97940 0.94866 0.96368 1.69937 1.35626 1.33396 1.14334 0.86430 0.84523 0.78088 0.78308 1.19788 1.20947 1.20835 1.19712 0.79715 0.87148 0.84298 1.90712 1.44539 1.17493 1.86746 1.22959 1.02660 0.92649 0.84434 1.86559 1.78597 1.44976 1.14302 1.23660 0.74669 0.87091 0.84534 1.90682 1.41872 1.19830 1.86629 1.19539 1.06171 0.96822 0.85137 1.20395 0.95002 1.03116 0.98660 1.23762 0.99111 0.94304 0.86399 1.84013 1.32116 1.49892 1.43160 1.19592 0.84131 0.98311 0.97623 1.19934 0.95283 0.97755 0.99572 1.20937 0.93220 0.99520 0.97683 1.20799 1.00653 0.98490 0.95265 1.20326 0.92654 0.96522 0.99205 1.19705 0.95808 0.99798 0.96030 0.93156 0.91770 0.91897 0.89403 0.91779 0.94618 0.93691 0.92715 0.88754 0.88802 0.86278 0.86134 0.77355 0.85063 0.84778 0.85247 0.85583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 10.24 37.16 0.38 -1.87 16 2 C 0.10 1.60 5.93 -4.05 -0.02 1.57 16 3 N -0.59 -12.34 2.46 -175.07 -0.43 -12.77 16 4 C 0.25 6.35 5.16 -5.19 -0.03 6.33 16 5 C -0.53 -14.78 9.39 -34.44 -0.32 -15.10 16 6 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 9 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 C 0.51 10.64 7.75 -10.98 -0.09 10.55 16 14 O -0.52 -13.24 16.08 -14.10 -0.23 -13.46 16 15 C 0.05 0.81 4.50 36.01 0.16 0.98 16 16 O -0.33 -5.30 9.75 -45.92 -0.45 -5.75 16 17 C 0.46 6.20 7.95 36.01 0.29 6.49 16 18 O -0.50 -7.91 15.78 -18.75 -0.30 -8.20 16 19 C -0.04 -0.37 6.36 -29.04 -0.18 -0.56 16 20 C -0.17 -1.78 4.85 -102.66 -0.50 -2.28 16 21 C 0.03 0.27 11.89 29.24 0.35 0.61 16 22 O -0.19 -2.06 10.58 3.92 0.04 -2.02 16 23 C 0.05 0.56 7.42 -38.47 -0.29 0.28 16 24 C -0.11 -0.95 10.07 -39.46 -0.40 -1.35 16 25 C -0.10 -0.74 10.01 -39.54 -0.40 -1.14 16 26 C -0.13 -1.14 9.98 -39.94 -0.40 -1.54 16 27 C -0.07 -0.71 10.05 -39.69 -0.40 -1.11 16 28 C -0.11 -1.29 6.38 -105.16 -0.67 -1.97 16 29 H 0.05 0.64 7.22 -51.93 -0.37 0.26 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 33 H 0.06 0.86 6.44 -51.93 -0.33 0.52 16 34 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 35 H 0.05 1.30 7.42 -51.93 -0.39 0.92 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.09 1.40 7.39 -51.93 -0.38 1.02 16 38 H 0.09 1.32 7.18 -51.93 -0.37 0.95 16 39 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.12 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.21 1.05 8.06 -52.49 -0.42 0.62 16 42 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 43 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 44 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 45 H 0.13 1.17 8.06 -52.48 -0.42 0.74 16 LS Contribution 392.96 15.07 5.92 5.92 Total: -1.00 -36.58 392.96 -8.37 -44.95 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -6.04 Total: -1.33 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -2.61 Total: 1.54 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.31 Total: -38.33 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.93 Total: -29.43 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.58 -8.37 -44.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803720495.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.630 kcal (2) G-P(sol) polarization free energy of solvation -36.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds