Wall clock time and date at job start Wed Apr 1 2020 03:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46491 * 109.47289 * 2 1 4 4 C 1.46500 * 119.99801 * 269.99810 * 3 2 1 5 5 C 1.50703 * 109.47362 * 270.00009 * 4 3 2 6 6 H 1.08008 * 119.99752 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00291 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00007 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 120.00048 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47040 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47062 * 119.99496 * 9 7 5 12 12 H 1.48494 * 109.46896 * 239.99157 * 9 7 5 13 13 C 1.34776 * 120.00452 * 90.00236 * 3 2 1 14 14 O 1.21274 * 120.00467 * 180.02562 * 13 3 2 15 15 C 1.50704 * 119.99643 * 359.97438 * 13 3 2 16 16 O 1.45196 * 109.47016 * 180.02562 * 15 13 3 17 17 C 1.34234 * 116.99938 * 179.97438 * 16 15 13 18 18 O 1.20822 * 119.99973 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.00068 * 179.97438 * 17 16 15 20 20 C 1.50697 * 109.47266 * 180.02562 * 19 17 16 21 21 C 1.33993 * 126.90420 * 265.02210 * 20 19 17 22 22 O 1.34448 * 110.15516 * 179.97438 * 21 20 19 23 23 C 1.34805 * 110.88700 * 0.02562 * 22 21 20 24 24 C 1.38948 * 133.49264 * 180.02562 * 23 22 21 25 25 C 1.37844 * 119.81737 * 179.97438 * 24 23 22 26 26 C 1.38748 * 120.68488 * 359.97438 * 25 24 23 27 27 C 1.36735 * 120.41744 * 359.97438 * 26 25 24 28 28 C 1.39409 * 119.71652 * 359.76340 * 27 26 25 29 29 H 1.08998 * 109.47522 * 300.00160 * 1 2 3 30 30 H 1.09002 * 109.47121 * 60.00199 * 1 2 3 31 31 H 1.09002 * 109.47127 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47240 * 239.99518 * 2 1 3 33 33 H 1.09003 * 109.46951 * 120.00329 * 2 1 3 34 34 H 1.08996 * 109.47402 * 29.99639 * 4 3 2 35 35 H 1.08999 * 109.47280 * 150.00267 * 4 3 2 36 36 H 0.97001 * 120.00168 * 180.02562 * 8 7 5 37 37 H 1.08996 * 109.46943 * 60.00331 * 15 13 3 38 38 H 1.08999 * 109.47285 * 300.00471 * 15 13 3 39 39 H 1.09004 * 109.46932 * 300.00373 * 19 17 16 40 40 H 1.08997 * 109.47392 * 59.99712 * 19 17 16 41 41 H 1.08001 * 124.92097 * 359.95797 * 21 20 19 42 42 H 1.08002 * 120.09254 * 359.96896 * 24 23 22 43 43 H 1.07997 * 119.66085 * 179.97438 * 25 24 23 44 44 H 1.07997 * 119.78740 * 179.97438 * 26 25 24 45 45 H 1.08005 * 120.14117 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0717 -1.2687 5 6 3.6858 1.8348 -1.7038 6 1 4.3429 1.2307 -1.0957 7 6 4.1495 2.3902 -2.8775 8 7 3.3495 3.1263 -3.6176 9 14 5.9136 2.0960 -3.4170 10 1 6.6009 1.2400 -2.4170 11 1 5.9205 1.4177 -4.7381 12 1 6.6216 3.3968 -3.5248 13 6 2.2430 2.0165 1.1671 14 8 2.6469 3.1600 1.1671 15 6 1.9913 1.3063 2.4723 16 8 2.3055 2.1960 3.5759 17 6 2.1335 1.7127 4.8163 18 8 1.7341 0.5834 4.9746 19 6 2.4396 2.5782 6.0114 20 6 2.1654 1.8046 7.2753 21 6 1.0387 1.8214 8.0005 22 8 1.1587 1.0047 9.0617 23 6 2.3711 0.4156 9.0802 24 6 2.9814 -0.4899 9.9394 25 6 4.2665 -0.9180 9.6839 26 6 4.9600 -0.4543 8.5752 27 6 4.3772 0.4362 7.7168 28 6 3.0762 0.8763 7.9558 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.5818 1.6875 -2.0284 35 1 2.0956 3.1409 -1.1385 36 1 3.6756 3.5167 -4.4435 37 1 2.6212 0.4186 2.5302 38 1 0.9433 1.0125 2.5299 39 1 3.4885 2.8736 5.9869 40 1 1.8109 3.4682 5.9861 41 1 0.1615 2.4063 7.7665 42 1 2.4503 -0.8573 10.8051 43 1 4.7386 -1.6215 10.3537 44 1 5.9664 -0.7990 8.3892 45 1 4.9210 0.7939 6.8548 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000803720495.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:35 Heat of formation + Delta-G solvation = -108.437329 kcal Electronic energy + Delta-G solvation = -29064.928383 eV Core-core repulsion = 24820.565041 eV Total energy + Delta-G solvation = -4244.363343 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.47938 -41.72612 -40.55328 -38.79058 -37.70280 -36.98443 -35.07612 -34.94072 -31.83714 -31.63242 -31.13704 -30.56999 -29.23889 -28.11508 -24.94488 -24.31835 -24.18801 -23.27715 -22.80491 -20.91839 -20.25533 -19.01455 -18.65941 -18.36512 -18.26642 -17.80990 -17.70777 -17.46253 -17.07641 -16.68812 -16.60148 -16.25803 -15.84045 -15.12846 -14.87998 -14.83282 -14.75017 -14.56289 -14.26747 -13.97225 -13.79542 -13.62327 -13.59813 -13.29694 -13.24493 -13.09661 -13.05307 -12.70194 -12.60039 -12.52261 -12.23829 -12.06496 -11.84977 -11.79848 -11.76061 -11.69824 -11.00309 -10.73468 -10.65698 -9.61585 -9.55587 -9.16225 -8.23968 -6.38325 -0.05034 0.38054 1.00287 1.09376 1.36528 1.38879 1.49866 1.57434 1.61508 1.84681 2.33774 2.47211 2.76975 3.06193 3.41625 3.44317 3.49398 3.69566 3.84774 3.94616 3.96015 4.11268 4.13803 4.14775 4.36358 4.39382 4.44320 4.50354 4.56811 4.57118 4.65150 4.86959 4.93003 4.94346 5.01741 5.17775 5.23429 5.25618 5.34321 5.35096 5.44076 5.51641 5.53490 5.69047 5.78843 6.03419 6.16189 6.54126 6.66339 6.71053 7.20356 7.35873 8.83667 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016201 B = 0.002136 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.861246 B =13102.953259 C =13820.089615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.262 3.738 5 C -0.543 4.543 6 H 0.053 0.947 7 C 0.008 3.992 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.267 1.267 11 H -0.269 1.269 12 H -0.282 1.282 13 C 0.500 3.500 14 O -0.576 6.576 15 C 0.063 3.937 16 O -0.348 6.348 17 C 0.462 3.538 18 O -0.525 6.525 19 C -0.032 4.032 20 C -0.194 4.194 21 C 0.036 3.964 22 O -0.202 6.202 23 C 0.022 3.978 24 C -0.114 4.114 25 C -0.094 4.094 26 C -0.135 4.135 27 C -0.094 4.094 28 C -0.138 4.138 29 H 0.057 0.943 30 H 0.045 0.955 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.030 0.970 35 H 0.001 0.999 36 H 0.268 0.732 37 H 0.112 0.888 38 H 0.120 0.880 39 H 0.130 0.870 40 H 0.151 0.849 41 H 0.246 0.754 42 H 0.151 0.849 43 H 0.167 0.833 44 H 0.151 0.849 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.417 -8.736 27.085 28.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.328 5.328 4 C 0.142 3.858 5 C -0.582 4.582 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.792 3.208 10 H -0.192 1.192 11 H -0.194 1.194 12 H -0.207 1.207 13 C 0.287 3.713 14 O -0.456 6.456 15 C -0.014 4.014 16 O -0.264 6.264 17 C 0.306 3.694 18 O -0.414 6.414 19 C -0.069 4.069 20 C -0.195 4.195 21 C -0.029 4.029 22 O -0.103 6.103 23 C -0.025 4.025 24 C -0.132 4.132 25 C -0.112 4.112 26 C -0.153 4.153 27 C -0.112 4.112 28 C -0.139 4.139 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.115 0.885 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.048 0.952 35 H 0.019 0.981 36 H 0.077 0.923 37 H 0.130 0.870 38 H 0.138 0.862 39 H 0.148 0.852 40 H 0.169 0.831 41 H 0.262 0.738 42 H 0.169 0.831 43 H 0.184 0.816 44 H 0.169 0.831 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.546 -8.460 27.118 28.627 hybrid contribution 0.747 0.159 -1.156 1.386 sum -2.799 -8.301 25.962 27.400 Atomic orbital electron populations 1.22172 0.94285 1.03751 1.01883 1.21849 0.95588 0.81051 1.04294 1.48208 1.63604 1.15213 1.05755 1.18799 0.95598 0.91706 0.79744 1.21718 0.97777 1.32095 1.06596 0.92825 1.25849 1.02400 0.94446 0.96422 1.70049 1.37678 1.34125 1.14817 0.85362 0.78997 0.78021 0.78392 1.19152 1.19410 1.20742 1.20539 0.78325 0.86653 0.85809 1.90675 1.47090 1.20084 1.87741 1.22772 1.04504 0.91997 0.82101 1.86575 1.79094 1.45514 1.15172 1.24396 0.73560 0.87226 0.84206 1.90666 1.43119 1.20969 1.86643 1.19665 1.07477 0.96864 0.82870 1.20563 0.95586 1.04027 0.99329 1.24493 0.99761 0.93357 0.85292 1.84002 1.32202 1.50247 1.43860 1.20019 0.84462 0.99491 0.98483 1.20346 0.95862 0.97153 0.99857 1.21357 0.92757 0.99386 0.97686 1.21163 1.01609 0.97555 0.94949 1.20544 0.92789 0.97756 1.00118 1.20057 0.96546 1.00549 0.96705 0.92404 0.93589 0.88484 0.90008 0.88629 0.95245 0.98125 0.92344 0.86986 0.86203 0.85206 0.83103 0.73818 0.83093 0.81571 0.83081 0.85513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.99 10.24 71.98 0.74 -3.25 16 2 C 0.09 2.84 5.93 86.38 0.51 3.35 16 3 N -0.60 -25.14 2.46 -826.18 -2.03 -27.17 16 4 C 0.26 14.04 5.16 85.63 0.44 14.48 16 5 C -0.54 -31.16 9.39 25.60 0.24 -30.92 16 6 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 7 C 0.01 0.46 5.46 84.65 0.46 0.92 16 8 N -0.93 -55.72 13.29 21.45 0.28 -55.44 16 9 Si 0.97 44.75 29.54 68.60 2.03 46.77 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 13 C 0.50 21.23 7.75 87.66 0.68 21.91 16 14 O -0.58 -30.53 16.08 15.79 0.25 -30.28 16 15 C 0.06 1.96 4.50 71.24 0.32 2.28 16 16 O -0.35 -10.90 9.75 -45.10 -0.44 -11.34 16 17 C 0.46 11.93 7.95 71.24 0.57 12.50 16 18 O -0.53 -15.81 15.78 21.98 0.35 -15.47 16 19 C -0.03 -0.56 6.36 29.10 0.19 -0.38 16 20 C -0.19 -3.84 4.85 -18.60 -0.09 -3.94 16 21 C 0.04 0.60 11.89 66.85 0.79 1.39 16 22 O -0.20 -4.20 10.58 -8.88 -0.09 -4.30 16 23 C 0.02 0.48 7.42 22.99 0.17 0.65 16 24 C -0.11 -1.88 10.07 22.35 0.23 -1.65 16 25 C -0.09 -1.27 10.01 22.30 0.22 -1.05 16 26 C -0.13 -2.11 9.98 22.04 0.22 -1.89 16 27 C -0.09 -1.90 10.05 22.20 0.22 -1.68 16 28 C -0.14 -3.11 6.38 -20.21 -0.13 -3.24 16 29 H 0.06 1.33 7.22 -2.39 -0.02 1.32 16 30 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.08 2.57 8.07 -2.38 -0.02 2.55 16 33 H 0.10 2.29 6.44 -2.39 -0.02 2.28 16 34 H 0.03 1.59 8.07 -2.39 -0.02 1.57 16 35 H 0.00 0.04 7.42 -2.39 -0.02 0.02 16 36 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 37 H 0.11 3.09 7.39 -2.39 -0.02 3.07 16 38 H 0.12 3.10 7.18 -2.39 -0.02 3.08 16 39 H 0.13 2.01 8.14 -2.38 -0.02 1.99 16 40 H 0.15 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.25 1.82 8.06 -2.91 -0.02 1.79 16 42 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 43 H 0.17 1.07 8.06 -2.91 -0.02 1.04 16 44 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 45 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -83.13 392.96 7.14 -75.99 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 1.01 Total: 11.73 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 5.78 Total: 9.49 kcal Atomic # 7 Polarization: -80.86 SS G_CDS: -1.74 Total: -82.61 kcal Atomic # 8 Polarization: -61.45 SS G_CDS: 0.07 Total: -61.38 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -83.13 7.14 -75.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803720495.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.447 kcal (2) G-P(sol) polarization free energy of solvation -83.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds