Wall clock time and date at job start Wed Apr 1 2020 03:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 O 1.45200 * 109.47003 * 239.99742 * 2 1 3 5 5 C 1.34225 * 117.00048 * 89.99778 * 4 2 1 6 6 O 1.20823 * 120.00140 * 0.02562 * 5 4 2 7 7 C 1.50698 * 120.00276 * 180.02562 * 5 4 2 8 8 C 1.50701 * 109.47501 * 180.02562 * 7 5 4 9 9 C 1.33994 * 126.90562 * 265.02594 * 8 7 5 10 10 O 1.34447 * 110.15269 * 179.97438 * 9 8 7 11 11 C 1.34802 * 110.88927 * 359.97438 * 10 9 8 12 12 C 1.38941 * 133.49087 * 179.97438 * 11 10 9 13 13 C 1.37848 * 119.81675 * 179.97438 * 12 11 10 14 14 C 1.38745 * 120.68317 * 0.02562 * 13 12 11 15 15 C 1.36732 * 120.41883 * 359.97078 * 14 13 12 16 16 C 1.39408 * 119.71662 * 359.76992 * 15 14 13 17 17 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 18 18 O 1.21274 * 120.00414 * 114.99469 * 17 2 1 19 19 N 1.34776 * 119.99626 * 294.99517 * 17 2 1 20 20 C 1.46503 * 120.00522 * 0.02562 * 19 17 2 21 21 C 1.46508 * 120.00166 * 179.97438 * 19 17 2 22 22 C 1.50701 * 109.46623 * 89.99969 * 21 19 17 23 23 H 1.08000 * 120.00374 * 0.02562 * 22 21 19 24 24 C 1.37874 * 119.99772 * 180.02562 * 22 21 19 25 25 N 1.31518 * 120.00305 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00042 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47287 * 60.00331 * 26 24 22 28 28 H 1.48506 * 109.47435 * 180.02562 * 26 24 22 29 29 H 1.48505 * 109.47277 * 299.99784 * 26 24 22 30 30 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 33 33 H 1.09003 * 109.47157 * 300.00608 * 7 5 4 34 34 H 1.09003 * 109.47354 * 60.00099 * 7 5 4 35 35 H 1.08003 * 124.92449 * 359.95190 * 9 8 7 36 36 H 1.08004 * 120.09655 * 359.97438 * 12 11 10 37 37 H 1.08007 * 119.66085 * 179.97438 * 13 12 11 38 38 H 1.08002 * 119.78549 * 180.02562 * 14 13 12 39 39 H 1.08005 * 120.14147 * 180.02562 * 15 14 13 40 40 H 1.08992 * 109.47575 * 89.99119 * 20 19 17 41 41 H 1.08994 * 109.47305 * 210.00451 * 20 19 17 42 42 H 1.09007 * 109.46469 * 329.99619 * 20 19 17 43 43 H 1.08994 * 109.47263 * 210.00467 * 21 19 17 44 44 H 1.09002 * 109.46810 * 330.00361 * 21 19 17 45 45 H 0.96998 * 120.00457 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6845 -1.1855 5 6 2.2171 0.0639 -2.2811 6 8 1.9982 1.2517 -2.2504 7 6 2.7182 -0.5774 -3.5495 8 6 2.8613 0.4728 -4.6208 9 6 1.9608 0.7916 -5.5605 10 8 2.4361 1.7766 -6.3424 11 6 3.6708 2.1486 -5.9496 12 6 4.5760 3.0965 -6.4107 13 6 5.7931 3.2454 -5.7809 14 6 6.1263 2.4571 -4.6889 15 6 5.2497 1.5186 -4.2193 16 6 4.0119 1.3573 -4.8400 17 6 2.0324 -0.7104 1.2304 18 8 2.6529 -1.7467 1.1215 19 7 1.7920 -0.1941 2.4519 20 6 1.0419 1.0574 2.5837 21 6 2.2799 -0.8850 3.6483 22 6 3.6615 -0.3877 3.9870 23 1 4.1293 0.3676 3.3730 24 6 4.3285 -0.8971 5.0809 25 7 3.7592 -1.8173 5.8285 26 14 6.0408 -0.2803 5.5014 27 1 5.9908 1.1811 5.7603 28 1 6.5360 -0.9815 6.7132 29 1 6.9573 -0.5506 4.3646 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 3.6870 -1.0411 -3.3640 34 1 2.0086 -1.3371 -3.8774 35 1 0.9935 0.3246 -5.6736 36 1 4.3267 3.7150 -7.2603 37 1 6.4950 3.9827 -6.1418 38 1 7.0837 2.5863 -4.2061 39 1 5.5136 0.9077 -3.3686 40 1 -0.0220 0.8363 2.6681 41 1 1.3747 1.5883 3.4755 42 1 1.2152 1.6789 1.7051 43 1 1.6073 -0.6859 4.4825 44 1 2.3161 -1.9578 3.4588 45 1 4.2285 -2.1760 6.5978 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000803722084.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:55 Heat of formation + Delta-G solvation = -82.305372 kcal Electronic energy + Delta-G solvation = -29520.710643 eV Core-core repulsion = 25277.480467 eV Total energy + Delta-G solvation = -4243.230176 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.74121 -40.64449 -38.96075 -38.09201 -36.48632 -34.93898 -34.27619 -32.90311 -31.66825 -30.83493 -30.17975 -28.41863 -27.69484 -26.17769 -24.50010 -23.58964 -22.87869 -22.55832 -21.37794 -20.03445 -18.85977 -17.93883 -17.64157 -17.33126 -16.60084 -16.55219 -16.33813 -16.16114 -15.93831 -15.69513 -15.09519 -14.65030 -14.39261 -14.24945 -14.05164 -13.80767 -13.33750 -13.25541 -13.12578 -12.77012 -12.52485 -12.46008 -12.37958 -12.18719 -12.09983 -11.90277 -11.66809 -11.43081 -11.21354 -11.14502 -10.94614 -10.72006 -10.64383 -10.56329 -10.20459 -10.18752 -9.68868 -8.92740 -8.87386 -8.46305 -8.43959 -7.75108 -6.07542 -4.12685 0.65938 1.12625 1.87755 2.17119 2.50874 2.67937 3.24212 3.30789 3.34993 3.39019 3.49405 3.89270 4.14809 4.21152 4.42084 4.53514 4.65801 4.73872 4.77343 4.87167 5.00328 5.06778 5.07764 5.12856 5.19136 5.21304 5.26988 5.31484 5.50683 5.61845 5.63888 5.65270 5.83527 5.94957 5.97333 6.00803 6.12983 6.20000 6.22855 6.37177 6.44770 6.88960 6.96353 7.36656 7.44233 7.73640 7.88354 8.18162 8.27070 8.82465 8.97254 9.52396 11.00577 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013009 B = 0.002528 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.859317 B =11071.886142 C =12519.088836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.070 3.930 3 H 0.105 0.895 4 O -0.326 6.326 5 C 0.459 3.541 6 O -0.502 6.502 7 C -0.040 4.040 8 C -0.169 4.169 9 C 0.028 3.972 10 O -0.191 6.191 11 C 0.050 3.950 12 C -0.108 4.108 13 C -0.095 4.095 14 C -0.134 4.134 15 C -0.068 4.068 16 C -0.113 4.113 17 C 0.508 3.492 18 O -0.520 6.520 19 N -0.596 5.596 20 C 0.076 3.924 21 C 0.247 3.753 22 C -0.530 4.530 23 H 0.057 0.943 24 C 0.062 3.938 25 N -0.894 5.894 26 Si 0.899 3.101 27 H -0.276 1.276 28 H -0.286 1.286 29 H -0.276 1.276 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.209 0.791 36 H 0.131 0.869 37 H 0.134 0.866 38 H 0.130 0.870 39 H 0.127 0.873 40 H 0.051 0.949 41 H 0.078 0.922 42 H 0.058 0.942 43 H 0.036 0.964 44 H 0.046 0.954 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.197 7.901 -23.802 25.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.011 3.989 3 H 0.122 0.878 4 O -0.241 6.241 5 C 0.301 3.699 6 O -0.389 6.389 7 C -0.077 4.077 8 C -0.170 4.170 9 C -0.038 4.038 10 O -0.092 6.092 11 C 0.003 3.997 12 C -0.126 4.126 13 C -0.113 4.113 14 C -0.152 4.152 15 C -0.086 4.086 16 C -0.114 4.114 17 C 0.293 3.707 18 O -0.395 6.395 19 N -0.329 5.329 20 C -0.068 4.068 21 C 0.128 3.872 22 C -0.569 4.569 23 H 0.075 0.925 24 C -0.140 4.140 25 N -0.533 5.533 26 Si 0.726 3.274 27 H -0.202 1.202 28 H -0.211 1.211 29 H -0.201 1.201 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.226 0.774 36 H 0.149 0.851 37 H 0.152 0.848 38 H 0.148 0.852 39 H 0.145 0.855 40 H 0.069 0.931 41 H 0.097 0.903 42 H 0.076 0.924 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.044 7.699 -23.837 25.374 hybrid contribution 0.867 0.466 0.603 1.155 sum -3.176 8.166 -23.234 24.831 Atomic orbital electron populations 1.22271 0.92402 1.03980 1.03995 1.22623 0.95693 0.97615 0.82920 0.87762 1.86607 1.76555 1.41437 1.19504 1.23644 0.74665 0.86088 0.85513 1.90667 1.47567 1.16472 1.84200 1.19546 1.05126 0.96074 0.86978 1.20396 0.94959 1.01702 0.99958 1.23726 0.98815 0.89807 0.91420 1.84005 1.28022 1.46281 1.50912 1.19582 0.85104 0.98855 0.96119 1.19925 0.92455 0.98066 1.02191 1.20943 0.95387 0.99299 0.95664 1.20812 1.00205 0.96640 0.97515 1.20355 0.91470 0.97939 0.98863 1.19702 0.95763 0.98269 0.97638 1.19769 0.81185 0.85938 0.83837 1.90701 1.39646 1.23412 1.85764 1.48079 1.54013 1.23926 1.06927 1.21844 0.95348 0.86751 1.02831 1.19349 0.94300 0.93784 0.79724 1.21385 1.01034 1.23092 1.11352 0.92488 1.24928 0.98217 0.94863 0.96000 1.69917 1.38181 1.27927 1.17275 0.86545 0.84214 0.78801 0.77796 1.20202 1.21109 1.20142 0.90949 0.89323 0.91368 0.86253 0.86259 0.77429 0.85083 0.84773 0.85201 0.85512 0.93110 0.90282 0.92375 0.94600 0.93638 0.92581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 9.27 37.16 0.34 -1.84 16 2 C 0.07 1.16 2.16 -27.88 -0.06 1.10 16 3 H 0.10 1.70 6.14 -51.93 -0.32 1.38 16 4 O -0.33 -5.35 9.42 -45.88 -0.43 -5.78 16 5 C 0.46 6.46 7.92 36.00 0.29 6.75 16 6 O -0.50 -8.16 15.25 -18.75 -0.29 -8.44 16 7 C -0.04 -0.40 6.36 -29.04 -0.18 -0.58 16 8 C -0.17 -1.84 4.85 -102.66 -0.50 -2.33 16 9 C 0.03 0.26 11.89 29.24 0.35 0.60 16 10 O -0.19 -2.12 10.58 3.93 0.04 -2.08 16 11 C 0.05 0.59 7.42 -38.48 -0.29 0.30 16 12 C -0.11 -1.02 10.07 -39.46 -0.40 -1.42 16 13 C -0.09 -0.81 10.01 -39.54 -0.40 -1.20 16 14 C -0.13 -1.27 9.98 -39.94 -0.40 -1.67 16 15 C -0.07 -0.78 10.05 -39.69 -0.40 -1.18 16 16 C -0.11 -1.38 6.38 -105.16 -0.67 -2.05 16 17 C 0.51 10.89 7.10 -10.99 -0.08 10.81 16 18 O -0.52 -13.46 16.09 -14.05 -0.23 -13.68 16 19 N -0.60 -12.63 2.86 -182.95 -0.52 -13.15 16 20 C 0.08 1.19 8.92 59.85 0.53 1.72 16 21 C 0.25 6.42 5.16 -5.19 -0.03 6.39 16 22 C -0.53 -15.03 9.39 -34.44 -0.32 -15.35 16 23 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 24 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 25 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 26 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 29 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.09 1.02 5.12 -51.93 -0.27 0.75 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.21 1.04 8.06 -52.48 -0.42 0.62 16 36 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 37 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 38 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 40 H 0.05 0.66 7.02 -51.93 -0.36 0.29 16 41 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 42 H 0.06 0.78 6.07 -51.92 -0.32 0.46 16 43 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 44 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 45 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 387.64 15.07 5.84 5.84 Total: -1.00 -36.99 387.64 -8.01 -45.00 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -5.84 Total: -0.57 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -2.30 Total: 1.73 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.21 Total: -38.85 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.90 Total: -29.99 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.99 -8.01 -45.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803722084.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.301 kcal (2) G-P(sol) polarization free energy of solvation -36.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds