Wall clock time and date at job start Wed Apr 1 2020 03:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.41908 * 2 1 4 4 O 1.42990 * 109.44391 * 119.92213 * 2 1 3 5 5 C 1.35988 * 116.71204 * 166.44083 * 4 2 1 6 6 C 1.38398 * 120.66102 * 147.19272 * 5 4 2 7 7 C 1.38316 * 119.87046 * 180.10614 * 6 5 4 8 8 C 1.38278 * 120.25857 * 359.94690 * 7 6 5 9 9 C 1.38285 * 120.20297 * 359.97438 * 8 7 6 10 10 C 1.38507 * 119.81529 * 0.04383 * 9 8 7 11 11 N 1.40206 * 120.74668 * 180.02562 * 10 9 8 12 12 C 1.46505 * 120.50885 * 15.47564 * 11 10 9 13 13 C 1.50692 * 109.47107 * 269.97831 * 12 11 10 14 14 O 1.20825 * 119.99965 * 359.97438 * 13 12 11 15 15 O 1.34234 * 120.00090 * 180.02562 * 13 12 11 16 16 C 1.45197 * 117.00158 * 177.70225 * 15 13 12 17 17 C 1.50699 * 112.85294 * 65.18554 * 16 15 13 18 18 H 1.08003 * 119.99795 * 242.61955 * 17 16 15 19 19 C 1.37872 * 119.99822 * 62.61759 * 17 16 15 20 20 N 1.31515 * 120.00211 * 353.75688 * 19 17 16 21 21 Si 1.86808 * 119.99955 * 173.75066 * 19 17 16 22 22 H 1.48499 * 109.46619 * 60.00267 * 21 19 17 23 23 H 1.48500 * 109.47097 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47190 * 300.00314 * 21 19 17 25 25 C 1.53788 * 113.60908 * 293.98922 * 16 15 13 26 26 C 1.53958 * 87.01678 * 220.04833 * 25 16 15 27 27 C 1.53775 * 87.11075 * 25.36329 * 26 25 16 28 28 C 1.35089 * 118.98526 * 195.45038 * 11 10 9 29 29 O 1.21295 * 120.13269 * 181.68919 * 28 11 10 30 30 H 1.09008 * 109.47120 * 179.91384 * 1 2 3 31 31 H 1.09002 * 109.46813 * 299.91433 * 1 2 3 32 32 H 1.08998 * 109.47383 * 59.91562 * 1 2 3 33 33 H 1.07998 * 120.06384 * 0.10734 * 6 5 4 34 34 H 1.08005 * 119.86634 * 179.97438 * 7 6 5 35 35 H 1.08004 * 119.89584 * 180.02562 * 8 7 6 36 36 H 1.08001 * 120.09429 * 180.02562 * 9 8 7 37 37 H 1.09002 * 109.46659 * 29.97926 * 12 11 10 38 38 H 1.08999 * 109.47224 * 149.97598 * 12 11 10 39 39 H 0.97001 * 120.00029 * 185.01728 * 20 19 17 40 40 H 1.08997 * 113.61844 * 334.57073 * 25 16 15 41 41 H 1.08998 * 113.60916 * 105.47490 * 25 16 15 42 42 H 1.08998 * 113.53517 * 270.81254 * 26 25 16 43 43 H 1.09000 * 113.66505 * 139.93300 * 26 25 16 44 44 H 1.08999 * 113.61603 * 220.08162 * 27 26 25 45 45 H 1.09009 * 113.61289 * 89.18716 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8924 1.0279 0.0000 4 8 2.0060 -0.6726 1.1686 5 6 3.3230 -1.0109 1.1854 6 6 4.0344 -1.0195 2.3726 7 6 5.3739 -1.3641 2.3705 8 6 6.0049 -1.7010 1.1871 9 6 5.3003 -1.6963 -0.0028 10 6 3.9587 -1.3518 -0.0074 11 7 3.2255 -1.3410 -1.2024 12 6 3.7460 -2.0045 -2.4004 13 6 4.5710 -1.0274 -3.1975 14 8 4.7097 0.1070 -2.8054 15 8 5.1511 -1.4170 -4.3436 16 6 5.8883 -0.4096 -5.0850 17 6 7.1014 0.0914 -4.3444 18 1 7.1668 1.1299 -4.0552 19 6 8.1277 -0.7761 -4.0360 20 7 7.9965 -2.0623 -4.2774 21 14 9.7046 -0.1246 -3.2754 22 1 9.3939 0.5375 -1.9830 23 1 10.6437 -1.2510 -3.0419 24 1 10.3298 0.8576 -4.1972 25 6 5.0012 0.7145 -5.6458 26 6 5.8665 0.6533 -6.9178 27 6 6.1765 -0.8054 -6.5428 28 6 2.0315 -0.7098 -1.2322 29 8 1.3658 -0.7137 -2.2461 30 1 -0.3634 -1.0277 -0.0015 31 1 -0.3633 0.5125 0.8908 32 1 -0.3634 0.5151 -0.8892 33 1 3.5445 -0.7577 3.2988 34 1 5.9291 -1.3704 3.2969 35 1 7.0510 -1.9696 1.1922 36 1 5.7947 -1.9601 -0.9260 37 1 4.3679 -2.8500 -2.1061 38 1 2.9146 -2.3596 -3.0093 39 1 8.6872 -2.6818 -3.9945 40 1 3.9658 0.4144 -5.8072 41 1 5.0905 1.6542 -5.1007 42 1 6.7376 1.3075 -6.8835 43 1 5.2955 0.7550 -7.8407 44 1 7.2132 -1.0912 -6.7208 45 1 5.4631 -1.5220 -6.9499 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810857909.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:43 Heat of formation + Delta-G solvation = -88.791868 kcal Electronic energy + Delta-G solvation = -31760.885728 eV Core-core repulsion = 27517.374276 eV Total energy + Delta-G solvation = -4243.511451 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.61511 -39.39751 -38.82679 -37.80778 -37.00572 -35.45067 -34.18670 -32.36437 -32.18949 -30.23965 -29.86597 -28.20019 -26.20747 -24.61199 -24.37330 -23.32626 -23.06118 -22.31968 -20.22164 -19.34857 -19.14833 -18.60474 -17.46138 -16.98637 -16.90030 -16.10776 -15.48535 -15.37706 -15.04082 -14.89458 -14.72533 -14.62864 -14.42068 -14.13181 -13.96766 -13.71673 -13.24985 -13.10459 -12.77644 -12.42528 -12.35255 -12.26766 -11.97057 -11.79068 -11.63255 -11.21061 -11.14514 -11.10264 -11.08330 -10.94911 -10.63378 -10.48227 -10.34291 -9.95553 -9.90537 -9.86399 -9.37736 -8.86657 -8.65529 -8.59580 -8.58027 -7.80929 -6.17959 -4.29871 1.11850 1.30639 2.24153 2.56584 3.13131 3.22173 3.26218 3.30528 3.35043 3.74410 3.88579 4.03185 4.28810 4.62989 4.68358 4.82690 5.01249 5.11138 5.15801 5.26314 5.30518 5.40354 5.50049 5.54271 5.58731 5.63170 5.67820 5.73376 5.87453 5.89182 6.02858 6.11141 6.20784 6.32820 6.40996 6.48781 6.52480 6.61840 6.65257 6.88424 6.92581 7.07151 7.24040 7.34964 7.48949 7.71386 7.75942 7.85614 8.27712 8.73805 9.10205 9.39959 10.86192 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011589 B = 0.004650 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.595981 B = 6019.789476 C = 7812.030848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.080 3.920 3 H 0.104 0.896 4 O -0.304 6.304 5 C 0.074 3.926 6 C -0.112 4.112 7 C -0.116 4.116 8 C -0.107 4.107 9 C -0.110 4.110 10 C 0.107 3.893 11 N -0.531 5.531 12 C 0.108 3.892 13 C 0.448 3.552 14 O -0.500 6.500 15 O -0.342 6.342 16 C 0.241 3.759 17 C -0.512 4.512 18 H 0.066 0.934 19 C 0.077 3.923 20 N -0.862 5.862 21 Si 0.890 3.110 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.273 1.273 25 C -0.159 4.159 26 C -0.131 4.131 27 C -0.107 4.107 28 C 0.498 3.502 29 O -0.504 6.504 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.136 0.864 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.137 0.863 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.264 0.736 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.079 0.921 43 H 0.052 0.948 44 H 0.074 0.926 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.707 -0.818 10.622 13.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.021 3.979 3 H 0.122 0.878 4 O -0.219 6.219 5 C 0.028 3.972 6 C -0.131 4.131 7 C -0.135 4.135 8 C -0.126 4.126 9 C -0.130 4.130 10 C 0.012 3.988 11 N -0.255 5.255 12 C -0.015 4.015 13 C 0.288 3.712 14 O -0.388 6.388 15 O -0.257 6.257 16 C 0.208 3.792 17 C -0.549 4.549 18 H 0.084 0.916 19 C -0.129 4.129 20 N -0.498 5.498 21 Si 0.717 3.283 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.198 1.198 25 C -0.197 4.197 26 C -0.169 4.169 27 C -0.144 4.144 28 C 0.286 3.714 29 O -0.378 6.378 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.154 0.846 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.155 0.845 37 H 0.138 0.862 38 H 0.141 0.859 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.098 0.902 43 H 0.071 0.929 44 H 0.093 0.907 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.083 -0.675 10.119 13.614 hybrid contribution 1.238 0.405 0.178 1.314 sum -7.845 -0.270 10.296 12.947 Atomic orbital electron populations 1.21696 0.89045 1.04240 1.03944 1.22623 0.97802 0.96445 0.81059 0.87840 1.86190 1.21712 1.74297 1.39700 1.18537 0.83526 1.02400 0.92730 1.20428 0.93549 1.03071 0.96080 1.20954 0.93657 1.00389 0.98460 1.21024 1.00222 0.99763 0.91564 1.20884 0.91059 1.01087 0.99987 1.18099 0.92811 1.03363 0.84483 1.45296 1.18554 1.52194 1.09451 1.21173 0.99915 0.94677 0.85715 1.22996 0.78502 0.87852 0.81888 1.90576 1.58138 1.20832 1.69298 1.86483 1.60751 1.46356 1.32097 1.21227 0.88365 0.82439 0.87191 1.20895 0.99432 0.96235 1.38316 0.91555 1.25053 0.98250 0.94863 0.94712 1.70029 1.34330 1.01470 1.43969 0.86676 0.82863 0.78693 0.80053 1.19976 1.21016 1.19831 1.23551 0.97464 1.01141 0.97512 1.22568 0.99728 0.98530 0.96071 1.22897 1.01556 0.94494 0.95502 1.21473 0.80417 0.78659 0.90879 1.90733 1.55845 1.58036 1.33208 0.91107 0.90322 0.89046 0.84643 0.85105 0.85094 0.84492 0.86202 0.85941 0.92637 0.92231 0.91952 0.90236 0.92927 0.90682 0.92218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.38 9.14 37.16 0.34 -1.04 16 2 C 0.08 1.09 3.68 -27.84 -0.10 0.98 16 3 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 4 O -0.30 -4.19 10.09 -19.70 -0.20 -4.39 16 5 C 0.07 1.08 6.44 -39.09 -0.25 0.83 16 6 C -0.11 -1.34 10.00 -39.49 -0.39 -1.74 16 7 C -0.12 -1.31 10.04 -39.54 -0.40 -1.71 16 8 C -0.11 -1.44 10.04 -39.55 -0.40 -1.84 16 9 C -0.11 -1.79 9.13 -39.46 -0.36 -2.15 16 10 C 0.11 1.76 6.38 -83.49 -0.53 1.23 16 11 N -0.53 -9.36 2.21 -114.48 -0.25 -9.61 16 12 C 0.11 1.97 5.37 -5.19 -0.03 1.95 16 13 C 0.45 10.30 7.15 36.00 0.26 10.56 16 14 O -0.50 -12.75 14.88 -18.75 -0.28 -13.02 16 15 O -0.34 -8.51 9.76 -39.27 -0.38 -8.90 16 16 C 0.24 6.06 0.47 -90.96 -0.04 6.01 16 17 C -0.51 -13.85 7.08 -34.44 -0.24 -14.10 16 18 H 0.07 1.87 7.81 -52.48 -0.41 1.46 16 19 C 0.08 2.05 5.29 -17.82 -0.09 1.95 16 20 N -0.86 -23.24 12.78 55.43 0.71 -22.53 16 21 Si 0.89 20.64 29.55 -169.99 -5.02 15.62 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 25 C -0.16 -3.60 6.56 -25.82 -0.17 -3.77 16 26 C -0.13 -2.67 7.81 -25.83 -0.20 -2.87 16 27 C -0.11 -2.43 7.28 -25.92 -0.19 -2.62 16 28 C 0.50 8.55 7.38 -10.80 -0.08 8.47 16 29 O -0.50 -9.63 15.81 5.54 0.09 -9.54 16 30 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.94 7.86 -51.93 -0.41 0.54 16 33 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 35 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 36 H 0.14 2.50 6.48 -52.49 -0.34 2.16 16 37 H 0.12 1.94 7.06 -51.93 -0.37 1.57 16 38 H 0.12 2.07 7.45 -51.93 -0.39 1.69 16 39 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 40 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.06 1.47 8.08 -51.93 -0.42 1.05 16 42 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.07 1.82 7.97 -51.93 -0.41 1.40 16 45 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 LS Contribution 377.83 15.07 5.69 5.69 Total: -1.00 -32.06 377.83 -8.64 -40.70 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -6.11 Total: 5.83 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -2.89 Total: 0.15 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: 0.46 Total: -32.14 kcal Atomic # 8 Polarization: -35.08 SS G_CDS: -0.77 Total: -35.86 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.06 -8.64 -40.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810857909.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.091 kcal (2) G-P(sol) polarization free energy of solvation -32.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds