Wall clock time and date at job start Wed Apr 1 2020 03:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.41908 * 2 1 4 4 O 1.42990 * 109.44391 * 119.92213 * 2 1 3 5 5 C 1.35988 * 116.71204 * 166.44083 * 4 2 1 6 6 C 1.38398 * 120.66102 * 147.19272 * 5 4 2 7 7 C 1.38316 * 119.87046 * 180.10614 * 6 5 4 8 8 C 1.38278 * 120.25857 * 359.94690 * 7 6 5 9 9 C 1.38285 * 120.20297 * 359.97438 * 8 7 6 10 10 C 1.38507 * 119.81529 * 0.04383 * 9 8 7 11 11 N 1.40206 * 120.74668 * 180.02562 * 10 9 8 12 12 C 1.46505 * 120.50885 * 15.47564 * 11 10 9 13 13 C 1.50692 * 109.47107 * 269.97831 * 12 11 10 14 14 O 1.20825 * 119.99965 * 359.97438 * 13 12 11 15 15 O 1.34234 * 120.00090 * 180.02562 * 13 12 11 16 16 C 1.45197 * 117.00158 * 177.70225 * 15 13 12 17 17 C 1.50699 * 112.85294 * 65.18554 * 16 15 13 18 18 H 1.08003 * 119.99795 * 242.61955 * 17 16 15 19 19 C 1.37872 * 119.99822 * 62.61759 * 17 16 15 20 20 N 1.31515 * 120.00211 * 353.75688 * 19 17 16 21 21 Si 1.86808 * 119.99955 * 173.75066 * 19 17 16 22 22 H 1.48499 * 109.46619 * 60.00267 * 21 19 17 23 23 H 1.48500 * 109.47097 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47190 * 300.00314 * 21 19 17 25 25 C 1.53788 * 113.60908 * 293.98922 * 16 15 13 26 26 C 1.53958 * 87.01678 * 220.04833 * 25 16 15 27 27 C 1.53775 * 87.11075 * 25.36329 * 26 25 16 28 28 C 1.35089 * 118.98526 * 195.45038 * 11 10 9 29 29 O 1.21295 * 120.13269 * 181.68919 * 28 11 10 30 30 H 1.09008 * 109.47120 * 179.91384 * 1 2 3 31 31 H 1.09002 * 109.46813 * 299.91433 * 1 2 3 32 32 H 1.08998 * 109.47383 * 59.91562 * 1 2 3 33 33 H 1.07998 * 120.06384 * 0.10734 * 6 5 4 34 34 H 1.08005 * 119.86634 * 179.97438 * 7 6 5 35 35 H 1.08004 * 119.89584 * 180.02562 * 8 7 6 36 36 H 1.08001 * 120.09429 * 180.02562 * 9 8 7 37 37 H 1.09002 * 109.46659 * 29.97926 * 12 11 10 38 38 H 1.08999 * 109.47224 * 149.97598 * 12 11 10 39 39 H 0.97001 * 120.00029 * 185.01728 * 20 19 17 40 40 H 1.08997 * 113.61844 * 334.57073 * 25 16 15 41 41 H 1.08998 * 113.60916 * 105.47490 * 25 16 15 42 42 H 1.08998 * 113.53517 * 270.81254 * 26 25 16 43 43 H 1.09000 * 113.66505 * 139.93300 * 26 25 16 44 44 H 1.08999 * 113.61603 * 220.08162 * 27 26 25 45 45 H 1.09009 * 113.61289 * 89.18716 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8924 1.0279 0.0000 4 8 2.0060 -0.6726 1.1686 5 6 3.3230 -1.0109 1.1854 6 6 4.0344 -1.0195 2.3726 7 6 5.3739 -1.3641 2.3705 8 6 6.0049 -1.7010 1.1871 9 6 5.3003 -1.6963 -0.0028 10 6 3.9587 -1.3518 -0.0074 11 7 3.2255 -1.3410 -1.2024 12 6 3.7460 -2.0045 -2.4004 13 6 4.5710 -1.0274 -3.1975 14 8 4.7097 0.1070 -2.8054 15 8 5.1511 -1.4170 -4.3436 16 6 5.8883 -0.4096 -5.0850 17 6 7.1014 0.0914 -4.3444 18 1 7.1668 1.1299 -4.0552 19 6 8.1277 -0.7761 -4.0360 20 7 7.9965 -2.0623 -4.2774 21 14 9.7046 -0.1246 -3.2754 22 1 9.3939 0.5375 -1.9830 23 1 10.6437 -1.2510 -3.0419 24 1 10.3298 0.8576 -4.1972 25 6 5.0012 0.7145 -5.6458 26 6 5.8665 0.6533 -6.9178 27 6 6.1765 -0.8054 -6.5428 28 6 2.0315 -0.7098 -1.2322 29 8 1.3658 -0.7137 -2.2461 30 1 -0.3634 -1.0277 -0.0015 31 1 -0.3633 0.5125 0.8908 32 1 -0.3634 0.5151 -0.8892 33 1 3.5445 -0.7577 3.2988 34 1 5.9291 -1.3704 3.2969 35 1 7.0510 -1.9696 1.1922 36 1 5.7947 -1.9601 -0.9260 37 1 4.3679 -2.8500 -2.1061 38 1 2.9146 -2.3596 -3.0093 39 1 8.6872 -2.6818 -3.9945 40 1 3.9658 0.4144 -5.8072 41 1 5.0905 1.6542 -5.1007 42 1 6.7376 1.3075 -6.8835 43 1 5.2955 0.7550 -7.8407 44 1 7.2132 -1.0912 -6.7208 45 1 5.4631 -1.5220 -6.9499 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810857909.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:42 Heat of formation + Delta-G solvation = -106.147349 kcal Electronic energy + Delta-G solvation = -31761.638318 eV Core-core repulsion = 27517.374276 eV Total energy + Delta-G solvation = -4244.264042 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.83521 -41.18268 -40.08842 -39.22003 -38.50629 -36.80035 -36.07450 -34.41073 -33.20381 -31.35771 -31.15302 -29.43059 -28.18061 -26.44802 -25.70609 -24.67550 -24.41679 -23.53577 -21.85831 -20.56945 -20.49203 -20.33324 -19.10854 -18.35200 -18.21394 -17.71871 -17.17848 -16.94794 -16.60799 -16.43551 -16.31586 -15.87102 -15.75001 -15.54917 -15.43518 -15.00631 -14.76833 -14.31118 -14.19465 -13.89654 -13.55653 -13.44452 -13.35570 -13.16212 -12.99172 -12.97065 -12.87255 -12.79982 -12.35059 -12.26294 -12.21819 -12.15930 -11.93299 -11.83384 -11.72621 -11.17724 -11.16774 -10.83664 -10.57906 -10.50094 -9.71872 -9.00040 -8.21671 -6.40187 0.00018 0.22848 0.95843 1.30515 1.35041 1.35807 1.43762 1.53654 2.02127 2.29218 2.34951 2.70562 2.77358 3.07621 3.54205 3.64994 3.78132 3.84716 3.89465 3.91567 3.95656 4.03815 4.07465 4.20857 4.28162 4.29151 4.43821 4.49721 4.59195 4.72027 4.75939 4.77505 4.85864 4.89960 5.07148 5.09689 5.18667 5.20758 5.30516 5.36431 5.48021 5.58698 5.62535 5.69246 5.75102 5.93329 6.20925 6.34248 6.44680 6.63300 7.19769 7.34602 8.82076 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011589 B = 0.004650 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.595981 B = 6019.789476 C = 7812.030848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.083 3.917 3 H 0.111 0.889 4 O -0.297 6.297 5 C 0.064 3.936 6 C -0.102 4.102 7 C -0.098 4.098 8 C -0.113 4.113 9 C -0.134 4.134 10 C 0.078 3.922 11 N -0.537 5.537 12 C 0.118 3.882 13 C 0.443 3.557 14 O -0.531 6.531 15 O -0.355 6.355 16 C 0.217 3.783 17 C -0.529 4.529 18 H 0.043 0.957 19 C 0.041 3.959 20 N -0.881 5.881 21 Si 0.945 3.055 22 H -0.280 1.280 23 H -0.272 1.272 24 H -0.268 1.268 25 C -0.155 4.155 26 C -0.110 4.110 27 C -0.104 4.104 28 C 0.486 3.514 29 O -0.534 6.534 30 H 0.068 0.932 31 H 0.108 0.892 32 H 0.090 0.910 33 H 0.171 0.829 34 H 0.174 0.826 35 H 0.145 0.855 36 H 0.105 0.895 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.267 0.733 40 H 0.065 0.935 41 H 0.044 0.956 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.055 0.945 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.903 -0.586 12.826 15.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.023 3.977 3 H 0.128 0.872 4 O -0.212 6.212 5 C 0.018 3.982 6 C -0.120 4.120 7 C -0.116 4.116 8 C -0.132 4.132 9 C -0.155 4.155 10 C -0.015 4.015 11 N -0.261 5.261 12 C -0.006 4.006 13 C 0.285 3.715 14 O -0.422 6.422 15 O -0.271 6.271 16 C 0.183 3.817 17 C -0.566 4.566 18 H 0.062 0.938 19 C -0.163 4.163 20 N -0.518 5.518 21 Si 0.770 3.230 22 H -0.206 1.206 23 H -0.197 1.197 24 H -0.193 1.193 25 C -0.193 4.193 26 C -0.147 4.147 27 C -0.142 4.142 28 C 0.275 3.725 29 O -0.410 6.410 30 H 0.088 0.912 31 H 0.127 0.873 32 H 0.108 0.892 33 H 0.188 0.812 34 H 0.191 0.809 35 H 0.162 0.838 36 H 0.123 0.877 37 H 0.153 0.847 38 H 0.151 0.849 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.063 0.937 42 H 0.096 0.904 43 H 0.109 0.891 44 H 0.074 0.926 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.273 -0.454 12.338 15.441 hybrid contribution 1.313 0.330 -0.418 1.417 sum -7.960 -0.123 11.920 14.334 Atomic orbital electron populations 1.21734 0.86535 1.04621 1.05331 1.22809 0.99575 0.95938 0.79338 0.87166 1.86199 1.21431 1.74324 1.39294 1.18858 0.83941 1.02586 0.92851 1.20911 0.93663 1.01189 0.96264 1.21416 0.93565 0.97613 0.99008 1.21294 1.00907 0.99577 0.91417 1.20797 0.91505 1.03144 1.00027 1.18349 0.93089 1.05338 0.84741 1.45423 1.18872 1.52295 1.09484 1.21111 0.99667 0.93822 0.86007 1.23837 0.78009 0.88298 0.81349 1.90537 1.59377 1.22430 1.69808 1.86459 1.60982 1.46575 1.33048 1.21475 0.88566 0.83616 0.87999 1.20915 1.00993 0.95362 1.39350 0.93829 1.25637 1.00614 0.95048 0.95026 1.70099 1.35121 1.02114 1.44429 0.85827 0.79762 0.78492 0.78935 1.20574 1.19671 1.19257 1.23483 0.97845 0.99441 0.98540 1.22488 0.99356 0.96433 0.96466 1.22862 1.00681 0.96380 0.94255 1.22311 0.80028 0.78250 0.91884 1.90699 1.56642 1.59157 1.34517 0.91244 0.87337 0.89157 0.81159 0.80897 0.83765 0.87718 0.84744 0.84894 0.92393 0.91676 0.93729 0.90418 0.89103 0.92577 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 9.14 71.98 0.66 -1.75 16 2 C 0.08 2.17 3.68 29.87 0.11 2.28 16 3 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 4 O -0.30 -7.67 10.09 -93.42 -0.94 -8.61 16 5 C 0.06 1.75 6.44 22.59 0.15 1.90 16 6 C -0.10 -2.08 10.00 22.33 0.22 -1.85 16 7 C -0.10 -1.87 10.04 22.30 0.22 -1.65 16 8 C -0.11 -2.91 10.04 22.29 0.22 -2.68 16 9 C -0.13 -4.49 9.13 22.35 0.20 -4.29 16 10 C 0.08 2.61 6.38 38.14 0.24 2.85 16 11 N -0.54 -19.51 2.21 -634.32 -1.40 -20.91 16 12 C 0.12 4.49 5.37 85.63 0.46 4.95 16 13 C 0.44 21.36 7.15 71.23 0.51 21.87 16 14 O -0.53 -28.46 14.88 21.97 0.33 -28.14 16 15 O -0.36 -18.39 9.76 -51.46 -0.50 -18.89 16 16 C 0.22 11.21 0.47 -11.01 -0.01 11.21 16 17 C -0.53 -29.64 7.08 25.60 0.18 -29.46 16 18 H 0.04 2.57 7.81 -2.91 -0.02 2.55 16 19 C 0.04 2.21 5.29 84.65 0.45 2.66 16 20 N -0.88 -48.51 12.78 21.45 0.27 -48.23 16 21 Si 0.95 42.95 29.55 68.60 2.03 44.98 16 22 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 24 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 25 C -0.16 -7.17 6.56 31.18 0.20 -6.97 16 26 C -0.11 -4.40 7.81 31.18 0.24 -4.15 16 27 C -0.10 -4.77 7.28 31.12 0.23 -4.54 16 28 C 0.49 16.99 7.38 87.63 0.65 17.64 16 29 O -0.53 -20.96 15.81 -3.08 -0.05 -21.01 16 30 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.11 1.43 8.14 -2.39 -0.02 1.42 16 32 H 0.09 1.78 7.86 -2.39 -0.02 1.76 16 33 H 0.17 2.31 8.06 -2.91 -0.02 2.28 16 34 H 0.17 1.90 8.06 -2.91 -0.02 1.87 16 35 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 36 H 0.10 4.11 6.48 -2.91 -0.02 4.09 16 37 H 0.13 4.64 7.06 -2.39 -0.02 4.62 16 38 H 0.13 4.71 7.45 -2.39 -0.02 4.69 16 39 H 0.27 13.89 8.32 -92.71 -0.77 13.12 16 40 H 0.06 2.88 8.14 -2.39 -0.02 2.86 16 41 H 0.04 2.17 8.08 -2.39 -0.02 2.15 16 42 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 43 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 44 H 0.06 2.75 7.97 -2.39 -0.02 2.73 16 45 H 0.07 3.06 8.14 -2.38 -0.02 3.04 16 Total: -1.00 -72.35 377.83 5.69 -66.66 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: 1.01 Total: 26.12 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 4.95 Total: 8.02 kcal Atomic # 7 Polarization: -68.02 SS G_CDS: -1.13 Total: -69.14 kcal Atomic # 8 Polarization: -75.48 SS G_CDS: -1.17 Total: -76.64 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -72.35 5.69 -66.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810857909.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.488 kcal (2) G-P(sol) polarization free energy of solvation -72.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds