Wall clock time and date at job start Wed Apr 1 2020 03:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.42014 * 2 1 4 4 O 1.42997 * 109.44596 * 240.08518 * 2 1 3 5 5 C 1.35983 * 116.71693 * 286.34383 * 4 2 1 6 6 C 1.38391 * 120.67004 * 147.15593 * 5 4 2 7 7 C 1.38313 * 119.87661 * 180.10601 * 6 5 4 8 8 C 1.38280 * 120.26005 * 359.97438 * 7 6 5 9 9 C 1.38292 * 120.19858 * 359.97373 * 8 7 6 10 10 C 1.38513 * 119.81237 * 0.03354 * 9 8 7 11 11 N 1.40208 * 120.73871 * 180.02562 * 10 9 8 12 12 C 1.46504 * 120.50889 * 15.45288 * 11 10 9 13 13 C 1.50702 * 109.46765 * 90.00191 * 12 11 10 14 14 O 1.20830 * 119.99979 * 0.02562 * 13 12 11 15 15 O 1.34234 * 120.00322 * 179.97438 * 13 12 11 16 16 C 1.45195 * 117.00396 * 183.02264 * 15 13 12 17 17 C 1.50703 * 112.84621 * 294.87933 * 16 15 13 18 18 H 1.08009 * 119.99988 * 118.52942 * 17 16 15 19 19 C 1.37875 * 119.99891 * 298.52576 * 17 16 15 20 20 N 1.31504 * 120.00187 * 1.78959 * 19 17 16 21 21 Si 1.86807 * 119.99818 * 181.79084 * 19 17 16 22 22 H 1.48503 * 109.46965 * 270.00126 * 21 19 17 23 23 H 1.48496 * 109.47330 * 149.99851 * 21 19 17 24 24 H 1.48503 * 109.47291 * 29.99890 * 21 19 17 25 25 C 1.53782 * 113.61683 * 66.07081 * 16 15 13 26 26 C 1.53958 * 87.01521 * 89.23008 * 25 16 15 27 27 C 1.53780 * 113.61529 * 163.68405 * 16 15 13 28 28 C 1.35088 * 118.98229 * 195.73250 * 11 10 9 29 29 O 1.21296 * 120.13486 * 181.38675 * 28 11 10 30 30 H 1.08998 * 109.47689 * 179.91240 * 1 2 3 31 31 H 1.09002 * 109.47133 * 299.91863 * 1 2 3 32 32 H 1.09007 * 109.47365 * 59.91166 * 1 2 3 33 33 H 1.08004 * 120.06252 * 0.08044 * 6 5 4 34 34 H 1.08005 * 119.87290 * 180.02562 * 7 6 5 35 35 H 1.07997 * 119.90390 * 179.97438 * 8 7 6 36 36 H 1.07999 * 120.09395 * 180.02562 * 9 8 7 37 37 H 1.08993 * 109.47470 * 330.00661 * 12 11 10 38 38 H 1.08998 * 109.47473 * 209.99897 * 12 11 10 39 39 H 0.97004 * 120.00307 * 355.05408 * 20 19 17 40 40 H 1.08992 * 113.61830 * 203.75029 * 25 16 15 41 41 H 1.08999 * 113.61602 * 334.65873 * 25 16 15 42 42 H 1.09001 * 113.54289 * 270.81021 * 26 25 16 43 43 H 1.09005 * 113.73939 * 139.94364 * 26 25 16 44 44 H 1.09000 * 113.61448 * 25.34483 * 27 16 15 45 45 H 1.08997 * 113.61002 * 156.25052 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8924 1.0280 0.0000 4 8 2.0060 -0.6725 -1.1687 5 6 1.8872 -2.0270 -1.1858 6 6 1.6581 -2.7007 -2.3727 7 6 1.5378 -4.0786 -2.3708 8 6 1.6461 -4.7858 -1.1875 9 6 1.8761 -4.1197 0.0025 10 6 1.9973 -2.7399 0.0070 11 7 2.2311 -2.0450 1.2021 12 6 2.6835 -2.7568 2.4001 13 6 4.1899 -2.7916 2.4248 14 8 4.8209 -2.2744 1.5335 15 8 4.8308 -3.3961 3.4375 16 6 6.2814 -3.3327 3.4312 17 6 6.8941 -4.0676 2.2668 18 1 7.4895 -3.5313 1.5426 19 6 6.6947 -5.4246 2.1261 20 7 5.9410 -6.0713 2.9880 21 14 7.4953 -6.3444 0.7109 22 1 6.5833 -6.3403 -0.4611 23 1 7.7670 -7.7453 1.1217 24 1 8.7719 -5.6788 0.3470 25 6 6.8368 -1.9117 3.6238 26 6 6.8045 -2.1911 5.1375 27 6 6.9193 -3.6837 4.7857 28 6 2.0274 -0.7100 1.2336 29 8 2.2472 -0.0842 2.2492 30 1 -0.3634 -1.0276 -0.0016 31 1 -0.3633 0.5126 0.8907 32 1 -0.3634 0.5152 -0.8892 33 1 1.5730 -2.1515 -3.2988 34 1 1.3594 -4.6043 -3.2972 35 1 1.5508 -5.8616 -1.1925 36 1 1.9608 -4.6738 0.9256 37 1 2.2968 -3.7757 2.3851 38 1 2.3174 -2.2422 3.2885 39 1 5.5839 -5.6092 3.7626 40 1 7.8426 -1.7783 3.2258 41 1 6.1484 -1.1274 3.3089 42 1 5.8586 -1.9251 5.6092 43 1 7.6695 -1.8013 5.6742 44 1 6.2974 -4.3279 5.4073 45 1 7.9478 -4.0357 4.7058 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810857910.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:45 Heat of formation + Delta-G solvation = -90.283440 kcal Electronic energy + Delta-G solvation = -31964.351699 eV Core-core repulsion = 27720.775568 eV Total energy + Delta-G solvation = -4243.576131 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.74408 -39.64943 -38.86308 -37.89213 -37.09311 -35.47897 -34.26064 -32.43348 -32.14078 -30.37363 -29.98062 -28.22336 -26.02074 -24.79361 -24.48280 -23.61860 -22.94543 -22.33722 -20.55592 -19.28982 -19.20470 -18.46518 -17.60225 -17.35324 -16.66718 -16.07893 -15.71651 -15.49313 -15.46193 -15.12387 -14.97040 -14.52737 -14.32059 -14.06840 -13.83391 -13.77253 -13.37720 -13.18169 -12.94039 -12.67525 -12.49082 -12.33691 -12.11986 -11.97986 -11.89772 -11.41311 -11.25702 -11.21572 -10.87187 -10.66420 -10.55873 -10.40983 -10.21846 -10.14370 -10.06328 -9.92937 -9.46645 -9.05912 -8.68105 -8.50534 -8.18751 -7.83974 -6.42672 -4.20245 1.08233 1.26788 2.21160 2.39198 3.20777 3.21695 3.40309 3.41538 3.58825 3.60340 3.81990 3.90609 4.46295 4.55244 4.59528 4.69619 4.93191 5.01888 5.13998 5.21034 5.24693 5.29554 5.33255 5.40330 5.42829 5.53097 5.54206 5.59241 5.68500 5.70420 5.90303 5.97448 6.15588 6.23760 6.30814 6.32156 6.46027 6.60671 6.66684 6.68219 6.83849 6.86431 7.06790 7.29986 7.30995 7.64507 7.68152 8.10205 8.38545 8.77551 8.94517 9.55164 10.94980 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011336 B = 0.004847 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.328566 B = 5774.797726 C = 7461.369718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.083 3.917 3 H 0.149 0.851 4 O -0.298 6.298 5 C 0.083 3.917 6 C -0.112 4.112 7 C -0.114 4.114 8 C -0.107 4.107 9 C -0.120 4.120 10 C 0.107 3.893 11 N -0.529 5.529 12 C 0.109 3.891 13 C 0.450 3.550 14 O -0.486 6.486 15 O -0.353 6.353 16 C 0.213 3.787 17 C -0.589 4.589 18 H 0.058 0.942 19 C 0.033 3.967 20 N -0.893 5.893 21 Si 1.065 2.935 22 H -0.287 1.287 23 H -0.283 1.283 24 H -0.287 1.287 25 C -0.145 4.145 26 C -0.148 4.148 27 C -0.109 4.109 28 C 0.498 3.502 29 O -0.507 6.507 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.279 0.721 40 H 0.081 0.919 41 H 0.052 0.948 42 H 0.069 0.931 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.324 5.682 -6.279 15.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.024 3.976 3 H 0.166 0.834 4 O -0.213 6.213 5 C 0.037 3.963 6 C -0.131 4.131 7 C -0.133 4.133 8 C -0.125 4.125 9 C -0.140 4.140 10 C 0.013 3.987 11 N -0.254 5.254 12 C -0.014 4.014 13 C 0.289 3.711 14 O -0.373 6.373 15 O -0.270 6.270 16 C 0.179 3.821 17 C -0.627 4.627 18 H 0.076 0.924 19 C -0.175 4.175 20 N -0.529 5.529 21 Si 0.893 3.107 22 H -0.213 1.213 23 H -0.209 1.209 24 H -0.213 1.213 25 C -0.183 4.183 26 C -0.186 4.186 27 C -0.146 4.146 28 C 0.287 3.713 29 O -0.381 6.381 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.154 0.846 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.071 0.929 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.751 4.874 -6.732 15.220 hybrid contribution 0.103 1.418 0.908 1.687 sum -12.648 6.292 -5.824 15.280 Atomic orbital electron populations 1.22342 0.92544 1.03962 1.04433 1.22841 0.96314 0.97501 0.80958 0.83363 1.86272 1.79207 1.16305 1.39476 1.18536 1.02766 0.82413 0.92625 1.20471 1.02169 0.94315 0.96124 1.20961 1.00932 0.92938 0.98461 1.20991 0.99691 1.00298 0.91561 1.20784 1.01899 0.91266 1.00036 1.18061 1.03174 0.92711 0.84754 1.45194 1.62541 1.07489 1.10153 1.21168 0.91752 1.00122 0.88403 1.22980 0.90129 0.76632 0.81369 1.90613 1.68146 1.42050 1.36445 1.86358 1.25985 1.68386 1.46259 1.20901 0.73412 0.92531 0.95254 1.22052 1.34584 0.94744 1.11291 0.92398 1.25821 0.94956 0.95006 1.01707 1.70669 1.29180 1.40857 1.12183 0.83604 0.76140 0.75773 0.75152 1.21320 1.20854 1.21273 1.23349 1.01421 0.98701 0.94806 1.22989 1.00463 0.98224 0.96908 1.22957 1.00741 0.94528 0.96403 1.21431 0.77466 0.81542 0.90904 1.90757 1.49346 1.64697 1.33345 0.91466 0.89989 0.89692 0.84567 0.85013 0.84978 0.84778 0.86098 0.85879 0.90937 0.90028 0.92934 0.91226 0.92560 0.92269 0.89315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.65 9.29 37.15 0.35 -1.30 16 2 C 0.08 1.08 3.82 -27.85 -0.11 0.97 16 3 H 0.15 1.65 8.14 -51.93 -0.42 1.23 16 4 O -0.30 -4.36 10.18 -19.69 -0.20 -4.56 16 5 C 0.08 1.23 5.85 -39.09 -0.23 1.00 16 6 C -0.11 -1.37 10.00 -39.50 -0.39 -1.76 16 7 C -0.11 -1.28 10.04 -39.54 -0.40 -1.67 16 8 C -0.11 -1.33 10.04 -39.55 -0.40 -1.73 16 9 C -0.12 -1.78 9.36 -39.46 -0.37 -2.15 16 10 C 0.11 1.73 6.39 -83.49 -0.53 1.20 16 11 N -0.53 -9.16 2.21 -114.48 -0.25 -9.41 16 12 C 0.11 1.95 5.80 -5.19 -0.03 1.92 16 13 C 0.45 10.59 7.41 36.01 0.27 10.85 16 14 O -0.49 -12.99 14.53 -18.75 -0.27 -13.26 16 15 O -0.35 -8.80 9.10 -39.27 -0.36 -9.16 16 16 C 0.21 5.43 0.11 -90.96 -0.01 5.42 16 17 C -0.59 -16.72 7.35 -34.44 -0.25 -16.97 16 18 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 19 C 0.03 0.92 5.40 -17.82 -0.10 0.82 16 20 N -0.89 -25.75 13.51 55.43 0.75 -25.00 16 21 Si 1.07 25.35 29.90 -169.99 -5.08 20.27 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 25 C -0.15 -3.37 6.90 -25.83 -0.18 -3.55 16 26 C -0.15 -2.97 8.03 -25.83 -0.21 -3.18 16 27 C -0.11 -2.46 6.67 -25.92 -0.17 -2.63 16 28 C 0.50 8.41 6.91 -10.81 -0.07 8.34 16 29 O -0.51 -9.76 16.77 5.54 0.09 -9.67 16 30 H 0.07 0.66 7.81 -51.93 -0.41 0.26 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.14 1.34 8.06 -52.48 -0.42 0.91 16 34 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 35 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 36 H 0.13 1.94 6.12 -52.49 -0.32 1.62 16 37 H 0.12 1.87 5.96 -51.93 -0.31 1.56 16 38 H 0.12 2.01 7.48 -51.93 -0.39 1.62 16 39 H 0.28 8.01 5.76 -40.82 -0.24 7.77 16 40 H 0.08 1.87 8.09 -51.93 -0.42 1.44 16 41 H 0.05 1.26 7.32 -51.93 -0.38 0.88 16 42 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.06 1.33 7.77 -51.93 -0.40 0.92 16 45 H 0.09 2.01 8.09 -51.93 -0.42 1.59 16 LS Contribution 373.99 15.07 5.64 5.64 Total: -1.00 -35.19 373.99 -8.40 -43.58 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -5.87 Total: 5.99 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -2.84 Total: -4.41 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.50 Total: -34.41 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -0.74 Total: -36.65 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -5.08 Total: 20.27 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.19 -8.40 -43.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810857910.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.701 kcal (2) G-P(sol) polarization free energy of solvation -35.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds