Wall clock time and date at job start Wed Apr 1 2020 03:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.42014 * 2 1 4 4 O 1.42997 * 109.44596 * 240.08518 * 2 1 3 5 5 C 1.35983 * 116.71693 * 286.34383 * 4 2 1 6 6 C 1.38391 * 120.67004 * 147.15593 * 5 4 2 7 7 C 1.38313 * 119.87661 * 180.10601 * 6 5 4 8 8 C 1.38280 * 120.26005 * 359.97438 * 7 6 5 9 9 C 1.38292 * 120.19858 * 359.97373 * 8 7 6 10 10 C 1.38513 * 119.81237 * 0.03354 * 9 8 7 11 11 N 1.40208 * 120.73871 * 180.02562 * 10 9 8 12 12 C 1.46504 * 120.50889 * 15.45288 * 11 10 9 13 13 C 1.50702 * 109.46765 * 90.00191 * 12 11 10 14 14 O 1.20830 * 119.99979 * 0.02562 * 13 12 11 15 15 O 1.34234 * 120.00322 * 179.97438 * 13 12 11 16 16 C 1.45195 * 117.00396 * 183.02264 * 15 13 12 17 17 C 1.50703 * 112.84621 * 294.87933 * 16 15 13 18 18 H 1.08009 * 119.99988 * 118.52942 * 17 16 15 19 19 C 1.37875 * 119.99891 * 298.52576 * 17 16 15 20 20 N 1.31504 * 120.00187 * 1.78959 * 19 17 16 21 21 Si 1.86807 * 119.99818 * 181.79084 * 19 17 16 22 22 H 1.48503 * 109.46965 * 270.00126 * 21 19 17 23 23 H 1.48496 * 109.47330 * 149.99851 * 21 19 17 24 24 H 1.48503 * 109.47291 * 29.99890 * 21 19 17 25 25 C 1.53782 * 113.61683 * 66.07081 * 16 15 13 26 26 C 1.53958 * 87.01521 * 89.23008 * 25 16 15 27 27 C 1.53780 * 113.61529 * 163.68405 * 16 15 13 28 28 C 1.35088 * 118.98229 * 195.73250 * 11 10 9 29 29 O 1.21296 * 120.13486 * 181.38675 * 28 11 10 30 30 H 1.08998 * 109.47689 * 179.91240 * 1 2 3 31 31 H 1.09002 * 109.47133 * 299.91863 * 1 2 3 32 32 H 1.09007 * 109.47365 * 59.91166 * 1 2 3 33 33 H 1.08004 * 120.06252 * 0.08044 * 6 5 4 34 34 H 1.08005 * 119.87290 * 180.02562 * 7 6 5 35 35 H 1.07997 * 119.90390 * 179.97438 * 8 7 6 36 36 H 1.07999 * 120.09395 * 180.02562 * 9 8 7 37 37 H 1.08993 * 109.47470 * 330.00661 * 12 11 10 38 38 H 1.08998 * 109.47473 * 209.99897 * 12 11 10 39 39 H 0.97004 * 120.00307 * 355.05408 * 20 19 17 40 40 H 1.08992 * 113.61830 * 203.75029 * 25 16 15 41 41 H 1.08999 * 113.61602 * 334.65873 * 25 16 15 42 42 H 1.09001 * 113.54289 * 270.81021 * 26 25 16 43 43 H 1.09005 * 113.73939 * 139.94364 * 26 25 16 44 44 H 1.09000 * 113.61448 * 25.34483 * 27 16 15 45 45 H 1.08997 * 113.61002 * 156.25052 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8924 1.0280 0.0000 4 8 2.0060 -0.6725 -1.1687 5 6 1.8872 -2.0270 -1.1858 6 6 1.6581 -2.7007 -2.3727 7 6 1.5378 -4.0786 -2.3708 8 6 1.6461 -4.7858 -1.1875 9 6 1.8761 -4.1197 0.0025 10 6 1.9973 -2.7399 0.0070 11 7 2.2311 -2.0450 1.2021 12 6 2.6835 -2.7568 2.4001 13 6 4.1899 -2.7916 2.4248 14 8 4.8209 -2.2744 1.5335 15 8 4.8308 -3.3961 3.4375 16 6 6.2814 -3.3327 3.4312 17 6 6.8941 -4.0676 2.2668 18 1 7.4895 -3.5313 1.5426 19 6 6.6947 -5.4246 2.1261 20 7 5.9410 -6.0713 2.9880 21 14 7.4953 -6.3444 0.7109 22 1 6.5833 -6.3403 -0.4611 23 1 7.7670 -7.7453 1.1217 24 1 8.7719 -5.6788 0.3470 25 6 6.8368 -1.9117 3.6238 26 6 6.8045 -2.1911 5.1375 27 6 6.9193 -3.6837 4.7857 28 6 2.0274 -0.7100 1.2336 29 8 2.2472 -0.0842 2.2492 30 1 -0.3634 -1.0276 -0.0016 31 1 -0.3633 0.5126 0.8907 32 1 -0.3634 0.5152 -0.8892 33 1 1.5730 -2.1515 -3.2988 34 1 1.3594 -4.6043 -3.2972 35 1 1.5508 -5.8616 -1.1925 36 1 1.9608 -4.6738 0.9256 37 1 2.2968 -3.7757 2.3851 38 1 2.3174 -2.2422 3.2885 39 1 5.5839 -5.6092 3.7626 40 1 7.8426 -1.7783 3.2258 41 1 6.1484 -1.1274 3.3089 42 1 5.8586 -1.9251 5.6092 43 1 7.6695 -1.8013 5.6742 44 1 6.2974 -4.3279 5.4073 45 1 7.9478 -4.0357 4.7058 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810857910.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:45 Heat of formation + Delta-G solvation = -110.671052 kcal Electronic energy + Delta-G solvation = -31965.235772 eV Core-core repulsion = 27720.775568 eV Total energy + Delta-G solvation = -4244.460204 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.92902 -41.48525 -40.10479 -39.29375 -38.58749 -36.80552 -36.18147 -34.56306 -33.10094 -31.40582 -31.24935 -29.43452 -28.03032 -26.63571 -25.64821 -24.83477 -24.52434 -23.69247 -22.17986 -20.44220 -20.36987 -20.31551 -19.55370 -18.58327 -18.29968 -17.46963 -17.05142 -16.92262 -16.86531 -16.58699 -16.34904 -15.93167 -15.75326 -15.58634 -15.40083 -15.17759 -14.96021 -14.51450 -14.30931 -14.10239 -13.81208 -13.53726 -13.45230 -13.25904 -13.17327 -12.93333 -12.79346 -12.43749 -12.35292 -12.25902 -12.22704 -12.09759 -11.98698 -11.97744 -11.89908 -11.31609 -11.11641 -10.98475 -10.61241 -10.21360 -9.72243 -8.98818 -8.64210 -6.42722 0.00151 0.24669 0.89789 1.21741 1.37038 1.45990 1.52031 1.72491 2.04659 2.17455 2.48203 2.64204 2.80249 3.12735 3.49510 3.56762 3.68269 3.69487 3.74003 3.82281 3.88631 3.92393 3.96841 4.09006 4.21889 4.30009 4.40071 4.42633 4.52950 4.61191 4.64966 4.67102 4.80251 4.87540 4.88721 4.99192 5.00318 5.18508 5.20551 5.28606 5.44587 5.47827 5.63724 5.65655 5.72615 6.03468 6.15822 6.21243 6.40387 6.57145 7.02161 7.38091 8.73235 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011336 B = 0.004847 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.328566 B = 5774.797726 C = 7461.369718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.083 3.917 3 H 0.164 0.836 4 O -0.307 6.307 5 C 0.066 3.934 6 C -0.110 4.110 7 C -0.100 4.100 8 C -0.112 4.112 9 C -0.139 4.139 10 C 0.074 3.926 11 N -0.534 5.534 12 C 0.117 3.883 13 C 0.441 3.559 14 O -0.526 6.526 15 O -0.359 6.359 16 C 0.189 3.811 17 C -0.606 4.606 18 H 0.030 0.970 19 C -0.005 4.005 20 N -0.907 5.907 21 Si 1.103 2.897 22 H -0.281 1.281 23 H -0.270 1.270 24 H -0.279 1.279 25 C -0.147 4.147 26 C -0.121 4.121 27 C -0.105 4.105 28 C 0.487 3.513 29 O -0.543 6.543 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.110 0.890 33 H 0.164 0.836 34 H 0.172 0.828 35 H 0.155 0.845 36 H 0.128 0.872 37 H 0.144 0.856 38 H 0.138 0.862 39 H 0.271 0.729 40 H 0.078 0.922 41 H 0.035 0.965 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.058 0.942 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.496 5.310 -7.684 17.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.024 3.976 3 H 0.181 0.819 4 O -0.222 6.222 5 C 0.020 3.980 6 C -0.129 4.129 7 C -0.119 4.119 8 C -0.130 4.130 9 C -0.159 4.159 10 C -0.019 4.019 11 N -0.258 5.258 12 C -0.007 4.007 13 C 0.283 3.717 14 O -0.414 6.414 15 O -0.275 6.275 16 C 0.155 3.845 17 C -0.643 4.643 18 H 0.048 0.952 19 C -0.208 4.208 20 N -0.542 5.542 21 Si 0.926 3.074 22 H -0.207 1.207 23 H -0.195 1.195 24 H -0.204 1.204 25 C -0.184 4.184 26 C -0.158 4.158 27 C -0.143 4.143 28 C 0.277 3.723 29 O -0.420 6.420 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.129 0.871 33 H 0.182 0.818 34 H 0.189 0.811 35 H 0.173 0.827 36 H 0.146 0.854 37 H 0.161 0.839 38 H 0.155 0.845 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.054 0.946 42 H 0.098 0.902 43 H 0.109 0.891 44 H 0.077 0.923 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.946 4.494 -8.143 16.763 hybrid contribution 0.448 1.543 1.256 2.040 sum -13.498 6.038 -6.887 16.312 Atomic orbital electron populations 1.22309 0.89513 1.04145 1.06123 1.23088 0.98592 0.97213 0.78669 0.81858 1.86242 1.79791 1.16419 1.39792 1.18901 1.03420 0.82551 0.93104 1.20911 1.00860 0.94996 0.96138 1.21445 0.98403 0.92608 0.99422 1.21362 0.98887 1.01581 0.91185 1.20958 1.02879 0.91049 1.01014 1.18369 1.05391 0.93409 0.84759 1.45294 1.62237 1.07882 1.10365 1.21185 0.87631 1.01944 0.89913 1.24064 0.92233 0.75172 0.80224 1.90578 1.69521 1.43645 1.37682 1.86336 1.25629 1.68769 1.46785 1.21134 0.73733 0.93796 0.95856 1.22156 1.35037 0.95277 1.11845 0.95166 1.26956 0.94812 0.95825 1.03233 1.70764 1.30195 1.40732 1.12552 0.83119 0.75847 0.75492 0.72979 1.20731 1.19456 1.20403 1.23314 1.00556 0.96924 0.97641 1.22862 1.02527 0.95720 0.94733 1.22889 1.00126 0.96444 0.94795 1.22295 0.76716 0.81408 0.91831 1.90720 1.51109 1.65308 1.34879 0.92009 0.89063 0.87099 0.81850 0.81086 0.82739 0.85433 0.83898 0.84452 0.91803 0.90364 0.94645 0.90164 0.89097 0.92306 0.89652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 9.29 71.98 0.67 -2.14 16 2 C 0.08 2.11 3.82 29.87 0.11 2.23 16 3 H 0.16 3.54 8.14 -2.38 -0.02 3.52 16 4 O -0.31 -8.76 10.18 -93.36 -0.95 -9.71 16 5 C 0.07 1.91 5.85 22.59 0.13 2.04 16 6 C -0.11 -2.42 10.00 22.32 0.22 -2.20 16 7 C -0.10 -1.92 10.04 22.30 0.22 -1.70 16 8 C -0.11 -2.57 10.04 22.29 0.22 -2.35 16 9 C -0.14 -4.09 9.36 22.35 0.21 -3.88 16 10 C 0.07 2.39 6.39 38.15 0.24 2.64 16 11 N -0.53 -18.88 2.21 -634.33 -1.40 -20.28 16 12 C 0.12 4.31 5.80 85.63 0.50 4.81 16 13 C 0.44 21.50 7.41 71.24 0.53 22.03 16 14 O -0.53 -29.29 14.53 21.95 0.32 -28.97 16 15 O -0.36 -18.35 9.10 -51.45 -0.47 -18.82 16 16 C 0.19 9.86 0.11 -11.01 0.00 9.86 16 17 C -0.61 -35.35 7.35 25.60 0.19 -35.16 16 18 H 0.03 1.87 7.81 -2.91 -0.02 1.85 16 19 C -0.01 -0.28 5.40 84.66 0.46 0.17 16 20 N -0.91 -52.74 13.51 21.44 0.29 -52.45 16 21 Si 1.10 51.22 29.90 68.60 2.05 53.27 16 22 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 25 C -0.15 -6.93 6.90 31.18 0.22 -6.71 16 26 C -0.12 -4.71 8.03 31.18 0.25 -4.46 16 27 C -0.10 -4.74 6.67 31.12 0.21 -4.53 16 28 C 0.49 16.78 6.91 87.63 0.61 17.39 16 29 O -0.54 -21.55 16.77 -3.08 -0.05 -21.60 16 30 H 0.06 1.14 7.81 -2.39 -0.02 1.12 16 31 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.16 2.62 8.06 -2.91 -0.02 2.59 16 34 H 0.17 1.92 8.06 -2.91 -0.02 1.89 16 35 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 36 H 0.13 3.76 6.12 -2.91 -0.02 3.74 16 37 H 0.14 4.55 5.96 -2.39 -0.01 4.53 16 38 H 0.14 4.61 7.48 -2.39 -0.02 4.59 16 39 H 0.27 15.82 5.76 -92.71 -0.53 15.29 16 40 H 0.08 3.67 8.09 -2.39 -0.02 3.65 16 41 H 0.03 1.75 7.32 -2.39 -0.02 1.74 16 42 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 43 H 0.09 2.93 8.14 -2.38 -0.02 2.91 16 44 H 0.06 2.63 7.77 -2.39 -0.02 2.61 16 45 H 0.09 3.87 8.09 -2.39 -0.02 3.85 16 Total: -1.00 -79.18 373.99 6.03 -73.15 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: 1.25 Total: 27.38 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 4.99 Total: -1.96 kcal Atomic # 7 Polarization: -71.62 SS G_CDS: -1.11 Total: -72.73 kcal Atomic # 8 Polarization: -77.96 SS G_CDS: -1.15 Total: -79.11 kcal Atomic # 14 Polarization: 51.22 SS G_CDS: 2.05 Total: 53.27 kcal Total: -79.18 6.03 -73.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810857910.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.522 kcal (2) G-P(sol) polarization free energy of solvation -79.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds