Wall clock time and date at job start Wed Apr 1 2020 03:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.47202 * 2 1 4 4 C 1.35670 * 116.99819 * 179.97438 * 3 2 1 5 5 C 1.39116 * 119.86441 * 359.72975 * 4 3 2 6 6 C 1.36602 * 120.13879 * 179.71611 * 5 4 3 7 7 C 1.40261 * 119.85401 * 0.57698 * 6 5 4 8 8 C 1.46407 * 120.13222 * 179.71942 * 7 6 5 9 9 C 1.37878 * 119.99680 * 29.57164 * 8 7 6 10 10 C 1.43196 * 120.00429 * 6.79824 * 9 8 7 11 11 N 6.16721 * 160.32597 * 247.08971 * 2 1 3 12 12 C 1.46964 * 119.99450 * 186.79723 * 9 8 7 13 13 O 1.21572 * 120.00611 * 359.97438 * 12 9 8 14 14 O 1.34834 * 120.00067 * 179.97438 * 12 9 8 15 15 C 1.45197 * 117.00532 * 179.97438 * 14 12 9 16 16 C 1.52997 * 109.47354 * 180.02562 * 15 14 12 17 17 O 1.42902 * 109.46922 * 65.00293 * 16 15 14 18 18 C 1.42903 * 114.00106 * 179.97438 * 17 16 15 19 19 C 1.50700 * 109.47099 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00069 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99759 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00201 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99889 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47100 * 59.99790 * 23 21 19 25 25 H 1.48503 * 109.46994 * 179.97438 * 23 21 19 26 26 H 1.48492 * 109.47087 * 299.99647 * 23 21 19 27 27 C 1.40265 * 119.73240 * 359.69304 * 7 6 5 28 28 C 1.36583 * 119.86270 * 0.02562 * 27 7 6 29 29 H 1.08998 * 109.47041 * 59.99841 * 1 2 3 30 30 H 1.09001 * 109.47017 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47161 * 300.00347 * 1 2 3 32 32 H 1.09007 * 109.46888 * 120.00206 * 2 1 3 33 33 H 1.08993 * 109.46833 * 239.99870 * 2 1 3 34 34 H 1.08001 * 119.93379 * 359.97438 * 5 4 3 35 35 H 1.07998 * 120.07388 * 180.29317 * 6 5 4 36 36 H 1.07995 * 120.00240 * 209.56344 * 8 7 6 37 37 H 1.08993 * 109.47285 * 300.00448 * 15 14 12 38 38 H 1.09004 * 109.46570 * 59.99991 * 15 14 12 39 39 H 1.09000 * 109.47486 * 184.99986 * 16 15 14 40 40 H 1.09000 * 109.47175 * 305.00756 * 16 15 14 41 41 H 1.08994 * 109.46903 * 300.00237 * 18 17 16 42 42 H 1.09004 * 109.46804 * 60.00283 * 18 17 16 43 43 H 0.96999 * 120.00128 * 180.02562 * 22 21 19 44 44 H 1.08003 * 120.06722 * 180.02562 * 27 7 6 45 45 H 1.07996 * 119.93458 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3514 1.5249 0.0005 5 6 4.1961 0.4197 0.0068 6 6 5.5512 0.5921 0.0015 7 6 6.0903 1.8869 0.0020 8 6 7.5418 2.0787 0.0026 9 6 8.3615 1.1396 -0.5867 10 6 7.7907 0.0533 -1.3247 11 7 7.3372 -0.8083 -1.9125 12 6 9.8209 1.2536 -0.4573 13 8 10.3056 2.1761 0.1689 14 8 10.6226 0.3350 -1.0331 15 6 12.0540 0.5108 -0.8646 16 6 12.7947 -0.6191 -1.5826 17 8 12.5648 -0.5207 -2.9896 18 6 13.2163 -1.5347 -3.7573 19 6 12.9061 -1.3355 -5.2186 20 1 12.2743 -0.5168 -5.5298 21 6 13.4281 -2.1992 -6.1580 22 7 14.1971 -3.1965 -5.7790 23 14 13.0443 -1.9519 -7.9693 24 1 13.5301 -0.6165 -8.4005 25 1 13.7213 -3.0058 -8.7671 26 1 11.5769 -2.0367 -8.1804 27 6 5.2333 2.9973 0.0015 28 6 3.8801 2.8119 0.0009 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 3.7798 -0.5768 0.0115 35 1 6.2061 -0.2668 0.0015 36 1 7.9704 2.9558 0.4644 37 1 12.3548 1.4689 -1.2886 38 1 12.3001 0.4901 0.1971 39 1 13.8631 -0.5379 -1.3826 40 1 12.4293 -1.5803 -1.2211 41 1 14.2933 -1.4720 -3.6023 42 1 12.8600 -2.5151 -3.4410 43 1 14.5647 -3.8039 -6.4399 44 1 5.6426 3.9968 0.0015 45 1 3.2192 3.6660 0.0009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815180323.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:46 Heat of formation + Delta-G solvation = -95.563071 kcal Electronic energy + Delta-G solvation = -27843.422823 eV Core-core repulsion = 23599.617751 eV Total energy + Delta-G solvation = -4243.805073 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.85491 -40.35268 -38.63694 -37.15680 -36.69467 -36.08469 -34.01469 -32.75299 -32.31607 -31.66889 -30.40939 -29.41217 -26.93896 -25.33968 -24.55762 -23.09905 -22.38146 -22.07264 -21.69591 -21.42044 -19.10377 -18.66798 -17.04359 -16.67668 -16.62883 -16.53316 -16.39253 -16.05606 -15.45090 -15.32885 -14.77755 -14.64721 -14.38714 -14.27951 -14.11830 -13.97878 -13.72662 -13.42216 -13.22871 -13.06893 -12.88380 -12.67640 -12.62715 -12.58737 -12.20881 -12.14447 -11.94136 -11.43308 -11.41682 -11.23003 -10.95368 -10.86469 -10.76709 -10.58629 -10.41280 -10.10923 -10.03791 -9.64089 -9.12267 -8.85638 -8.39540 -8.19397 -6.09661 -4.11156 -0.24066 0.88434 1.21315 2.32645 2.41444 2.60147 2.81661 3.16630 3.34368 3.36395 3.40952 3.44879 3.70842 4.15533 4.21116 4.28771 4.34384 4.37158 4.46675 4.63823 4.70039 4.71386 4.77460 4.84193 4.97821 5.18981 5.19574 5.23972 5.26863 5.29952 5.33934 5.45280 5.47062 5.50780 5.71866 5.82018 5.86216 5.92356 5.97022 6.07366 6.14117 6.45211 6.82145 7.06715 7.39178 7.41786 7.69891 7.80181 8.14514 8.54158 9.00851 9.53365 11.01831 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011615 B = 0.001947 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.155681 B =14376.819771 C =16029.627629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.311 6.311 4 C 0.159 3.841 5 C -0.212 4.212 6 C -0.043 4.043 7 C -0.148 4.148 8 C 0.080 3.920 9 C -0.105 4.105 10 C 0.252 3.748 11 N -0.397 5.397 12 C 0.521 3.479 13 O -0.507 6.507 14 O -0.333 6.333 15 C 0.076 3.924 16 C 0.060 3.940 17 O -0.391 6.391 18 C 0.195 3.805 19 C -0.515 4.515 20 H 0.066 0.934 21 C 0.056 3.944 22 N -0.899 5.899 23 Si 0.908 3.092 24 H -0.274 1.274 25 H -0.286 1.286 26 H -0.275 1.275 27 C -0.035 4.035 28 C -0.160 4.160 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.167 0.833 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.050 0.950 41 H 0.007 0.993 42 H 0.007 0.993 43 H 0.264 0.736 44 H 0.143 0.857 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.991 11.344 18.662 32.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 O -0.224 6.224 4 C 0.113 3.887 5 C -0.230 4.230 6 C -0.062 4.062 7 C -0.148 4.148 8 C 0.057 3.943 9 C -0.109 4.109 10 C -0.062 4.062 11 N -0.073 5.073 12 C 0.365 3.635 13 O -0.398 6.398 14 O -0.248 6.248 15 C 0.002 3.998 16 C -0.018 4.018 17 O -0.311 6.311 18 C 0.121 3.879 19 C -0.553 4.553 20 H 0.084 0.916 21 C -0.145 4.145 22 N -0.538 5.538 23 Si 0.736 3.264 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.200 1.200 27 C -0.053 4.053 28 C -0.178 4.178 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.184 0.816 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.025 0.975 42 H 0.025 0.975 43 H 0.074 0.926 44 H 0.161 0.839 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -24.642 10.357 17.746 32.085 hybrid contribution 0.567 -0.211 -0.632 0.874 sum -24.076 10.147 17.114 31.233 Atomic orbital electron populations 1.21788 0.92352 1.03166 1.03642 1.22911 0.96212 0.81409 1.01943 1.86034 1.18877 1.30052 1.87442 1.19401 0.82455 0.94191 0.92682 1.20986 0.94100 0.98580 1.09381 1.21315 0.95113 0.96665 0.93071 1.18858 0.92088 0.93833 1.10024 1.23113 0.90899 0.94406 0.85881 1.17335 0.90022 0.96223 1.07350 1.25144 0.93813 0.93330 0.93931 1.81345 1.08374 1.09206 1.08331 1.20319 0.86857 0.80103 0.76228 1.90873 1.76238 1.32792 1.39910 1.86726 1.20330 1.49181 1.68603 1.23302 0.75152 1.01073 1.00233 1.22337 0.97289 0.96501 0.85636 1.87923 1.74328 1.54841 1.13967 1.20231 0.91553 0.85620 0.90508 1.21007 1.30862 1.13380 0.90066 0.91585 1.24942 0.94984 0.94847 0.99707 1.69949 1.33202 1.16068 1.34579 0.86386 0.78682 0.77850 0.83525 1.19976 1.21131 1.19995 1.20975 0.92023 0.98451 0.93814 1.20170 0.95337 0.94925 1.07388 0.91366 0.90100 0.91412 0.91605 0.91524 0.84819 0.84919 0.81565 0.90071 0.90030 0.91717 0.93214 0.97543 0.97542 0.92599 0.83910 0.84339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 10.28 37.16 0.38 -0.23 16 2 C 0.05 0.28 5.45 37.16 0.20 0.48 16 3 O -0.31 -2.48 10.12 -18.71 -0.19 -2.67 16 4 C 0.16 1.32 6.70 -38.92 -0.26 1.06 16 5 C -0.21 -1.82 8.97 -39.85 -0.36 -2.17 16 6 C -0.04 -0.41 8.26 -39.41 -0.33 -0.73 16 7 C -0.15 -1.22 5.59 -105.09 -0.59 -1.80 16 8 C 0.08 0.66 9.46 -36.43 -0.34 0.31 16 9 C -0.10 -1.24 5.84 -104.57 -0.61 -1.85 16 10 C 0.25 3.61 11.27 -22.43 -0.25 3.36 16 11 N -0.40 -6.55 17.92 41.89 0.75 -5.80 16 12 C 0.52 7.39 7.87 34.26 0.27 7.66 16 13 O -0.51 -7.36 16.09 -19.32 -0.31 -7.68 16 14 O -0.33 -5.64 9.73 -43.64 -0.42 -6.07 16 15 C 0.08 1.18 5.86 37.16 0.22 1.40 16 16 C 0.06 1.11 6.33 37.16 0.24 1.34 16 17 O -0.39 -9.69 10.30 -38.80 -0.40 -10.09 16 18 C 0.19 5.46 5.69 36.01 0.20 5.67 16 19 C -0.51 -15.59 9.43 -34.44 -0.32 -15.92 16 20 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 21 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 22 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 23 Si 0.91 22.43 29.54 -169.99 -5.02 17.41 16 24 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 27 C -0.03 -0.22 9.75 -39.42 -0.38 -0.61 16 28 C -0.16 -1.13 9.92 -39.85 -0.40 -1.52 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.30 7.64 -51.92 -0.40 -0.09 16 33 H 0.07 0.36 7.66 -51.93 -0.40 -0.04 16 34 H 0.13 0.96 6.27 -52.49 -0.33 0.63 16 35 H 0.13 1.37 5.35 -52.49 -0.28 1.09 16 36 H 0.17 0.95 7.61 -52.49 -0.40 0.56 16 37 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 42 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 43 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.14 0.50 8.06 -52.48 -0.42 0.08 16 45 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 400.48 15.07 6.04 6.04 Total: -1.00 -36.27 400.48 -7.25 -43.52 By element: Atomic # 1 Polarization: -0.11 SS G_CDS: -6.00 Total: -6.10 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -2.43 Total: -1.98 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 1.49 Total: -32.37 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -1.32 Total: -26.51 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.27 -7.25 -43.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815180323.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.045 kcal (2) G-P(sol) polarization free energy of solvation -36.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds