Wall clock time and date at job start Wed Apr 1 2020 03:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.47202 * 2 1 4 4 C 1.35670 * 116.99819 * 179.97438 * 3 2 1 5 5 C 1.39116 * 119.86441 * 359.72975 * 4 3 2 6 6 C 1.36602 * 120.13879 * 179.71611 * 5 4 3 7 7 C 1.40261 * 119.85401 * 0.57698 * 6 5 4 8 8 C 1.46407 * 120.13222 * 179.71942 * 7 6 5 9 9 C 1.37878 * 119.99680 * 29.57164 * 8 7 6 10 10 C 1.43196 * 120.00429 * 6.79824 * 9 8 7 11 11 N 6.16721 * 160.32597 * 247.08971 * 2 1 3 12 12 C 1.46964 * 119.99450 * 186.79723 * 9 8 7 13 13 O 1.21572 * 120.00611 * 359.97438 * 12 9 8 14 14 O 1.34834 * 120.00067 * 179.97438 * 12 9 8 15 15 C 1.45197 * 117.00532 * 179.97438 * 14 12 9 16 16 C 1.52997 * 109.47354 * 180.02562 * 15 14 12 17 17 O 1.42902 * 109.46922 * 65.00293 * 16 15 14 18 18 C 1.42903 * 114.00106 * 179.97438 * 17 16 15 19 19 C 1.50700 * 109.47099 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00069 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99759 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00201 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99889 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47100 * 59.99790 * 23 21 19 25 25 H 1.48503 * 109.46994 * 179.97438 * 23 21 19 26 26 H 1.48492 * 109.47087 * 299.99647 * 23 21 19 27 27 C 1.40265 * 119.73240 * 359.69304 * 7 6 5 28 28 C 1.36583 * 119.86270 * 0.02562 * 27 7 6 29 29 H 1.08998 * 109.47041 * 59.99841 * 1 2 3 30 30 H 1.09001 * 109.47017 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47161 * 300.00347 * 1 2 3 32 32 H 1.09007 * 109.46888 * 120.00206 * 2 1 3 33 33 H 1.08993 * 109.46833 * 239.99870 * 2 1 3 34 34 H 1.08001 * 119.93379 * 359.97438 * 5 4 3 35 35 H 1.07998 * 120.07388 * 180.29317 * 6 5 4 36 36 H 1.07995 * 120.00240 * 209.56344 * 8 7 6 37 37 H 1.08993 * 109.47285 * 300.00448 * 15 14 12 38 38 H 1.09004 * 109.46570 * 59.99991 * 15 14 12 39 39 H 1.09000 * 109.47486 * 184.99986 * 16 15 14 40 40 H 1.09000 * 109.47175 * 305.00756 * 16 15 14 41 41 H 1.08994 * 109.46903 * 300.00237 * 18 17 16 42 42 H 1.09004 * 109.46804 * 60.00283 * 18 17 16 43 43 H 0.96999 * 120.00128 * 180.02562 * 22 21 19 44 44 H 1.08003 * 120.06722 * 180.02562 * 27 7 6 45 45 H 1.07996 * 119.93458 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3514 1.5249 0.0005 5 6 4.1961 0.4197 0.0068 6 6 5.5512 0.5921 0.0015 7 6 6.0903 1.8869 0.0020 8 6 7.5418 2.0787 0.0026 9 6 8.3615 1.1396 -0.5867 10 6 7.7907 0.0533 -1.3247 11 7 7.3372 -0.8083 -1.9125 12 6 9.8209 1.2536 -0.4573 13 8 10.3056 2.1761 0.1689 14 8 10.6226 0.3350 -1.0331 15 6 12.0540 0.5108 -0.8646 16 6 12.7947 -0.6191 -1.5826 17 8 12.5648 -0.5207 -2.9896 18 6 13.2163 -1.5347 -3.7573 19 6 12.9061 -1.3355 -5.2186 20 1 12.2743 -0.5168 -5.5298 21 6 13.4281 -2.1992 -6.1580 22 7 14.1971 -3.1965 -5.7790 23 14 13.0443 -1.9519 -7.9693 24 1 13.5301 -0.6165 -8.4005 25 1 13.7213 -3.0058 -8.7671 26 1 11.5769 -2.0367 -8.1804 27 6 5.2333 2.9973 0.0015 28 6 3.8801 2.8119 0.0009 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 3.7798 -0.5768 0.0115 35 1 6.2061 -0.2668 0.0015 36 1 7.9704 2.9558 0.4644 37 1 12.3548 1.4689 -1.2886 38 1 12.3001 0.4901 0.1971 39 1 13.8631 -0.5379 -1.3826 40 1 12.4293 -1.5803 -1.2211 41 1 14.2933 -1.4720 -3.6023 42 1 12.8600 -2.5151 -3.4410 43 1 14.5647 -3.8039 -6.4399 44 1 5.6426 3.9968 0.0015 45 1 3.2192 3.6660 0.0009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815180323.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:45 Heat of formation + Delta-G solvation = -117.396474 kcal Electronic energy + Delta-G solvation = -27844.369591 eV Core-core repulsion = 23599.617751 eV Total energy + Delta-G solvation = -4244.751840 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.62715 -41.27749 -39.36888 -38.73687 -37.71293 -37.46359 -34.97826 -34.83925 -32.83131 -32.24985 -31.76621 -30.30307 -29.02613 -26.15614 -25.09165 -24.61501 -24.05340 -23.03980 -22.51360 -22.30525 -19.97602 -19.37147 -18.73263 -18.04572 -17.92051 -17.37440 -17.18054 -17.08478 -16.79998 -16.40669 -16.28293 -16.10877 -15.52871 -15.33550 -14.97973 -14.75566 -14.64164 -14.41190 -14.32335 -14.06103 -14.01572 -13.68636 -13.62200 -13.42798 -13.24510 -13.17672 -12.95927 -12.86323 -12.73081 -12.68145 -12.46631 -12.05369 -11.92176 -11.82275 -11.72861 -11.66449 -11.32465 -10.92144 -10.88689 -10.29840 -10.23207 -9.08704 -8.35410 -6.47646 -1.00428 0.29040 0.52440 1.25173 1.36207 1.36370 1.41489 1.49727 1.76662 2.09511 2.29547 2.31561 2.67468 2.78953 2.98093 3.06340 3.37162 3.56640 3.72121 3.89067 3.93930 3.97588 3.99202 4.10640 4.13516 4.21005 4.30189 4.43103 4.45272 4.48844 4.57784 4.68732 4.70025 4.82045 4.82766 4.87048 4.89103 5.10229 5.13989 5.17357 5.24324 5.32024 5.34201 5.50582 5.58947 5.91861 6.24826 6.33826 6.47086 6.62261 6.76422 7.23652 8.76536 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011615 B = 0.001947 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.155681 B =14376.819771 C =16029.627629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.042 3.958 3 O -0.320 6.320 4 C 0.155 3.845 5 C -0.226 4.226 6 C -0.055 4.055 7 C -0.168 4.168 8 C 0.140 3.860 9 C -0.149 4.149 10 C 0.273 3.727 11 N -0.456 5.456 12 C 0.526 3.474 13 O -0.514 6.514 14 O -0.364 6.364 15 C 0.080 3.920 16 C 0.049 3.951 17 O -0.410 6.410 18 C 0.209 3.791 19 C -0.552 4.552 20 H 0.058 0.942 21 C 0.007 3.993 22 N -0.927 5.927 23 Si 0.981 3.019 24 H -0.262 1.262 25 H -0.271 1.271 26 H -0.271 1.271 27 C -0.015 4.015 28 C -0.166 4.166 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.138 0.862 35 H 0.117 0.883 36 H 0.203 0.797 37 H 0.081 0.919 38 H 0.119 0.881 39 H 0.088 0.912 40 H 0.049 0.951 41 H -0.004 1.004 42 H -0.016 1.016 43 H 0.272 0.728 44 H 0.183 0.817 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.248 13.758 19.152 34.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.032 4.032 3 O -0.233 6.233 4 C 0.109 3.891 5 C -0.244 4.244 6 C -0.074 4.074 7 C -0.169 4.169 8 C 0.118 3.882 9 C -0.154 4.154 10 C -0.040 4.040 11 N -0.133 5.133 12 C 0.372 3.628 13 O -0.405 6.405 14 O -0.281 6.281 15 C 0.007 3.993 16 C -0.027 4.027 17 O -0.331 6.331 18 C 0.134 3.866 19 C -0.590 4.590 20 H 0.076 0.924 21 C -0.191 4.191 22 N -0.566 5.566 23 Si 0.804 3.196 24 H -0.187 1.187 25 H -0.196 1.196 26 H -0.196 1.196 27 C -0.033 4.033 28 C -0.184 4.184 29 H 0.083 0.917 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.156 0.844 35 H 0.135 0.865 36 H 0.220 0.780 37 H 0.100 0.900 38 H 0.136 0.864 39 H 0.105 0.895 40 H 0.067 0.933 41 H 0.014 0.986 42 H 0.002 0.998 43 H 0.081 0.919 44 H 0.200 0.800 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -25.905 12.777 18.267 34.177 hybrid contribution 0.768 -0.896 -0.606 1.326 sum -25.138 11.881 17.662 32.939 Atomic orbital electron populations 1.21809 0.91089 1.04206 1.03525 1.23122 0.97246 0.80586 1.02281 1.86033 1.18699 1.31378 1.87215 1.19682 0.82642 0.94737 0.92079 1.21079 0.94015 0.99287 1.10053 1.21335 0.95363 0.97014 0.93679 1.19005 0.92317 0.94031 1.11525 1.23531 0.90445 0.93163 0.81057 1.17215 0.89082 0.97802 1.11265 1.25574 0.92670 0.92941 0.92843 1.81332 1.10096 1.10997 1.10857 1.20477 0.87247 0.79437 0.75647 1.90854 1.76436 1.32809 1.40435 1.86706 1.20976 1.50663 1.69739 1.23292 0.74800 0.99445 1.01744 1.22715 0.99462 0.98113 0.82455 1.87864 1.74239 1.53690 1.17257 1.19851 0.90877 0.85394 0.90488 1.21351 1.31910 1.14035 0.91706 0.92388 1.25943 0.94236 0.94084 1.04880 1.70048 1.33470 1.16569 1.36557 0.85264 0.78661 0.78621 0.77064 1.18691 1.19587 1.19566 1.21383 0.91433 0.99425 0.91023 1.20542 0.96084 0.94996 1.06797 0.91722 0.88518 0.91228 0.90803 0.91709 0.84432 0.86540 0.78042 0.90018 0.86357 0.89468 0.93259 0.98584 0.99804 0.91948 0.80003 0.82239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.28 71.98 0.74 -0.30 16 2 C 0.04 0.44 5.45 71.98 0.39 0.83 16 3 O -0.32 -4.76 10.12 -89.87 -0.91 -5.67 16 4 C 0.16 2.38 6.70 22.70 0.15 2.53 16 5 C -0.23 -3.83 8.97 22.10 0.20 -3.63 16 6 C -0.06 -1.03 8.26 22.38 0.18 -0.85 16 7 C -0.17 -2.40 5.59 -20.17 -0.11 -2.51 16 8 C 0.14 1.94 9.46 24.31 0.23 2.17 16 9 C -0.15 -3.42 5.84 -19.83 -0.12 -3.54 16 10 C 0.27 8.12 11.27 88.32 1.00 9.12 16 11 N -0.46 -15.99 17.92 19.02 0.34 -15.65 16 12 C 0.53 14.58 7.87 70.11 0.55 15.14 16 13 O -0.51 -13.97 16.09 19.60 0.32 -13.66 16 14 O -0.36 -12.47 9.73 -54.81 -0.53 -13.00 16 15 C 0.08 2.45 5.86 71.98 0.42 2.87 16 16 C 0.05 1.84 6.33 71.98 0.46 2.29 16 17 O -0.41 -20.99 10.30 -145.57 -1.50 -22.49 16 18 C 0.21 12.14 5.69 71.24 0.41 12.55 16 19 C -0.55 -34.31 9.43 25.60 0.24 -34.07 16 20 H 0.06 3.60 7.81 -2.91 -0.02 3.57 16 21 C 0.01 0.44 5.46 84.65 0.46 0.90 16 22 N -0.93 -56.94 13.29 21.45 0.28 -56.65 16 23 Si 0.98 45.98 29.54 68.60 2.03 48.01 16 24 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 25 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 26 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 27 C -0.02 -0.14 9.75 22.38 0.22 0.08 16 28 C -0.17 -1.87 9.92 22.10 0.22 -1.65 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.07 0.46 8.14 -2.38 -0.02 0.44 16 32 H 0.07 0.64 7.64 -2.38 -0.02 0.62 16 33 H 0.06 0.69 7.66 -2.39 -0.02 0.68 16 34 H 0.14 2.07 6.27 -2.91 -0.02 2.05 16 35 H 0.12 2.55 5.35 -2.91 -0.02 2.54 16 36 H 0.20 1.37 7.61 -2.91 -0.02 1.35 16 37 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.12 2.71 8.14 -2.38 -0.02 2.69 16 39 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 40 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 42 H -0.02 -0.97 8.14 -2.38 -0.02 -0.98 16 43 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 44 H 0.18 0.23 8.06 -2.91 -0.02 0.21 16 45 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 Total: -1.00 -81.29 400.48 6.68 -74.61 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: 1.01 Total: 2.57 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 5.64 Total: 1.93 kcal Atomic # 7 Polarization: -72.93 SS G_CDS: 0.63 Total: -72.30 kcal Atomic # 8 Polarization: -52.19 SS G_CDS: -2.63 Total: -54.82 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -81.29 6.68 -74.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815180323.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.785 kcal (2) G-P(sol) polarization free energy of solvation -81.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds