Wall clock time and date at job start Wed Apr 1 2020 03:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33609 * 1 3 3 C 1.47608 * 126.11035 * 2 1 4 4 C 1.38938 * 133.93778 * 359.93189 * 3 2 1 5 5 C 1.38115 * 119.75116 * 180.02562 * 4 3 2 6 6 C 1.38600 * 120.49011 * 0.04156 * 5 4 3 7 7 C 1.37987 * 120.56446 * 359.95766 * 6 5 4 8 8 C 1.39292 * 119.76898 * 0.02562 * 7 6 5 9 9 C 1.47128 * 133.63929 * 179.97438 * 8 7 6 10 10 O 1.21646 * 125.44267 * 0.02562 * 9 8 7 11 11 N 1.34507 * 109.11311 * 179.78465 * 9 8 7 12 12 C 1.46497 * 124.94003 * 180.22578 * 11 9 8 13 13 H 1.09006 * 109.47225 * 180.18529 * 12 11 9 14 14 C 1.52999 * 109.47735 * 300.18833 * 12 11 9 15 15 C 1.50703 * 109.47034 * 60.18677 * 12 11 9 16 16 O 1.20827 * 120.00025 * 0.02562 * 15 12 11 17 17 O 1.34230 * 120.00186 * 179.97438 * 15 12 11 18 18 C 1.45198 * 117.00083 * 180.02562 * 17 15 12 19 19 C 1.52998 * 109.46955 * 180.02562 * 18 17 15 20 20 O 1.42902 * 109.47557 * 64.99675 * 19 18 17 21 21 C 1.42898 * 114.00573 * 179.97438 * 20 19 18 22 22 C 1.50697 * 109.47535 * 180.02562 * 21 20 19 23 23 H 1.08006 * 119.99397 * 0.02562 * 22 21 20 24 24 C 1.37872 * 120.00382 * 180.02562 * 22 21 20 25 25 N 1.31514 * 119.99834 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00213 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47317 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47274 * 119.99926 * 26 24 22 29 29 H 1.48496 * 109.47231 * 239.99823 * 26 24 22 30 30 H 1.08002 * 120.00523 * 0.03611 * 1 2 3 31 31 H 1.08005 * 119.99708 * 179.75282 * 1 2 3 32 32 H 1.07993 * 120.12479 * 359.97438 * 4 3 2 33 33 H 1.07995 * 119.75329 * 180.02562 * 5 4 3 34 34 H 1.07998 * 119.71339 * 179.97438 * 6 5 4 35 35 H 1.07991 * 120.11449 * 179.97438 * 7 6 5 36 36 H 1.08998 * 109.47826 * 179.97438 * 14 12 11 37 37 H 1.08998 * 109.46817 * 300.00360 * 14 12 11 38 38 H 1.09006 * 109.47013 * 59.99566 * 14 12 11 39 39 H 1.09006 * 109.46866 * 299.99443 * 18 17 15 40 40 H 1.08990 * 109.47485 * 59.99912 * 18 17 15 41 41 H 1.09001 * 109.47056 * 184.99794 * 19 18 17 42 42 H 1.08996 * 109.47379 * 304.99914 * 19 18 17 43 43 H 1.08996 * 109.47116 * 300.00491 * 21 20 19 44 44 H 1.08999 * 109.46848 * 59.99934 * 21 20 19 45 45 H 0.97006 * 120.00084 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3361 0.0000 0.0000 3 6 2.2060 1.1925 0.0000 4 6 1.9659 2.5610 -0.0012 5 6 3.0285 3.4433 -0.0013 6 6 4.3325 2.9736 -0.0011 7 6 4.5901 1.6180 0.0000 8 6 3.5313 0.7129 0.0005 9 6 3.4514 -0.7562 0.0013 10 8 4.4027 -1.5144 0.0020 11 7 2.1585 -1.1270 0.0063 12 6 1.6830 -2.5126 0.0132 13 1 0.5930 -2.5228 0.0129 14 6 2.2001 -3.2357 -1.2321 15 6 2.1915 -3.2120 1.2475 16 8 2.8799 -2.6142 2.0403 17 8 1.8787 -4.4988 1.4667 18 6 2.4027 -5.1078 2.6762 19 6 1.9447 -6.5656 2.7528 20 8 2.5246 -7.3044 1.6757 21 6 2.1592 -8.6857 1.6552 22 6 2.8240 -9.3639 0.4852 23 1 3.4622 -8.7968 -0.1763 24 6 2.6177 -10.7083 0.2592 25 7 1.8409 -11.3989 1.0650 26 14 3.4424 -11.5491 -1.1907 27 1 4.2594 -10.5593 -1.9378 28 1 4.3178 -12.6421 -0.6966 29 1 2.4052 -12.1142 -2.0907 30 1 -0.5401 0.9353 -0.0006 31 1 -0.5400 -0.9354 -0.0040 32 1 0.9522 2.9334 -0.0028 33 1 2.8419 4.5070 -0.0018 34 1 5.1540 3.6747 -0.0017 35 1 5.6089 1.2601 -0.0002 36 1 1.8467 -4.2668 -1.2267 37 1 1.8324 -2.7298 -2.1248 38 1 3.2901 -3.2255 -1.2317 39 1 3.4920 -5.0700 2.6595 40 1 2.0336 -4.5645 3.5459 41 1 2.2628 -6.9970 3.7020 42 1 0.8581 -6.6094 2.6798 43 1 2.4820 -9.1608 2.5815 44 1 1.0769 -8.7738 1.5597 45 1 1.6954 -12.3446 0.9058 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815184329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:51 Heat of formation + Delta-G solvation = -94.489367 kcal Electronic energy + Delta-G solvation = -29375.323541 eV Core-core repulsion = 25131.565028 eV Total energy + Delta-G solvation = -4243.758514 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.05476 -40.29862 -38.53456 -37.21320 -36.91931 -36.00053 -33.94649 -32.76537 -32.05585 -30.48820 -30.39687 -29.73735 -26.95632 -25.50939 -24.06497 -23.80708 -22.46089 -22.15637 -21.81456 -20.89333 -19.42452 -18.11246 -17.23470 -17.21033 -16.64969 -16.51374 -16.39805 -16.00112 -15.54670 -15.23978 -14.88809 -14.85106 -14.62650 -14.37038 -14.25691 -14.09463 -13.70312 -13.36945 -13.09799 -12.91945 -12.80568 -12.57268 -12.44943 -12.26351 -12.00619 -11.87166 -11.73777 -11.54224 -11.43620 -10.92501 -10.87603 -10.74468 -10.42198 -10.38323 -10.16464 -10.04929 -9.54734 -9.39904 -9.11470 -8.88464 -8.43106 -8.21801 -6.12163 -4.13579 0.00733 0.68833 1.84834 1.99393 2.18910 2.64115 2.99962 3.29273 3.35802 3.40964 3.42890 3.66539 3.94267 4.32527 4.35203 4.46494 4.52603 4.57249 4.65889 4.74381 4.79380 4.91043 5.02827 5.14265 5.21169 5.24570 5.33536 5.43792 5.46882 5.48004 5.52785 5.62449 5.77287 5.84968 5.86334 5.91006 5.91360 6.03523 6.07113 6.31691 6.37677 6.53449 6.69600 7.04821 7.39215 7.66767 7.78475 7.81784 8.12304 8.52004 8.99524 9.51274 10.99400 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.020717 B = 0.002054 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.221046 B =13628.554550 C =13949.203874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.138 3.862 3 C -0.047 4.047 4 C -0.091 4.091 5 C -0.090 4.090 6 C -0.122 4.122 7 C -0.043 4.043 8 C -0.151 4.151 9 C 0.570 3.430 10 O -0.481 6.481 11 N -0.551 5.551 12 C 0.165 3.835 13 H 0.134 0.866 14 C -0.165 4.165 15 C 0.450 3.550 16 O -0.495 6.495 17 O -0.335 6.335 18 C 0.075 3.925 19 C 0.063 3.937 20 O -0.390 6.390 21 C 0.194 3.806 22 C -0.513 4.513 23 H 0.067 0.933 24 C 0.055 3.945 25 N -0.899 5.899 26 Si 0.908 3.092 27 H -0.270 1.270 28 H -0.282 1.282 29 H -0.282 1.282 30 H 0.130 0.870 31 H 0.117 0.883 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.050 0.950 43 H 0.006 0.994 44 H 0.007 0.993 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.100 31.842 -2.151 32.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.044 3.956 3 C -0.049 4.049 4 C -0.109 4.109 5 C -0.109 4.109 6 C -0.140 4.140 7 C -0.061 4.061 8 C -0.155 4.155 9 C 0.360 3.640 10 O -0.354 6.354 11 N -0.276 5.276 12 C 0.062 3.938 13 H 0.151 0.849 14 C -0.223 4.223 15 C 0.290 3.710 16 O -0.382 6.382 17 O -0.251 6.251 18 C 0.002 3.998 19 C -0.015 4.015 20 O -0.310 6.310 21 C 0.120 3.880 22 C -0.552 4.552 23 H 0.086 0.914 24 C -0.146 4.146 25 N -0.538 5.538 26 Si 0.735 3.265 27 H -0.194 1.194 28 H -0.208 1.208 29 H -0.208 1.208 30 H 0.148 0.852 31 H 0.135 0.865 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.154 0.846 36 H 0.117 0.883 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.024 0.976 44 H 0.025 0.975 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.242 31.289 -1.987 31.519 hybrid contribution 0.149 -0.768 -0.154 0.797 sum -3.093 30.521 -2.141 30.752 Atomic orbital electron populations 1.23815 0.91534 1.04069 1.04372 1.18463 0.91286 0.83868 1.01986 1.19424 0.92926 0.92830 0.99703 1.20579 1.00036 0.90126 1.00178 1.21295 0.92241 1.00000 0.97327 1.21236 0.97374 0.94933 1.00443 1.20800 0.98607 0.91976 0.94754 1.20541 0.94869 0.93921 1.06125 1.18075 0.82185 0.88078 0.75657 1.90853 1.39046 1.59295 1.46192 1.45444 1.06822 1.04440 1.70916 1.20532 1.01303 0.78909 0.93100 0.84862 1.22180 1.04041 1.01897 0.94163 1.23587 0.78492 0.81560 0.87312 1.90681 1.34767 1.66590 1.46194 1.86554 1.69117 1.24766 1.44632 1.23256 1.00151 0.92548 0.83859 1.22314 0.97869 0.88811 0.92503 1.87930 1.71441 1.24537 1.47073 1.20245 0.95234 0.75268 0.97278 1.21088 1.29120 0.93751 1.11194 0.91433 1.24952 0.95459 0.96966 0.97190 1.69971 1.37664 1.08488 1.37682 0.86274 0.79155 0.79258 0.81790 1.19439 1.20840 1.20816 0.85161 0.86534 0.84805 0.84718 0.84707 0.84646 0.88300 0.90549 0.90246 0.90365 0.90440 0.91867 0.93152 0.97615 0.97472 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.30 14.31 29.11 0.42 -0.88 16 2 C 0.14 1.35 6.73 -82.16 -0.55 0.80 16 3 C -0.05 -0.45 6.28 -104.79 -0.66 -1.11 16 4 C -0.09 -0.59 10.09 -39.37 -0.40 -0.98 16 5 C -0.09 -0.49 10.03 -39.49 -0.40 -0.89 16 6 C -0.12 -0.78 10.02 -39.54 -0.40 -1.18 16 7 C -0.04 -0.40 10.09 -39.28 -0.40 -0.79 16 8 C -0.15 -1.79 6.36 -104.87 -0.67 -2.46 16 9 C 0.57 8.56 6.67 -12.77 -0.09 8.47 16 10 O -0.48 -8.90 15.63 -8.26 -0.13 -9.03 16 11 N -0.55 -7.01 2.44 -107.74 -0.26 -7.28 16 12 C 0.17 2.05 3.30 -69.08 -0.23 1.82 16 13 H 0.13 1.17 6.49 -51.93 -0.34 0.83 16 14 C -0.17 -2.01 9.14 37.16 0.34 -1.67 16 15 C 0.45 7.30 6.99 36.01 0.25 7.55 16 16 O -0.50 -9.34 14.69 -23.83 -0.35 -9.69 16 17 O -0.34 -5.75 10.09 -42.02 -0.42 -6.18 16 18 C 0.08 1.26 5.84 37.16 0.22 1.48 16 19 C 0.06 1.16 6.33 37.16 0.24 1.40 16 20 O -0.39 -9.57 10.30 -38.80 -0.40 -9.97 16 21 C 0.19 5.33 5.69 36.00 0.20 5.54 16 22 C -0.51 -15.25 9.43 -34.44 -0.32 -15.58 16 23 H 0.07 2.01 7.81 -52.48 -0.41 1.60 16 24 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 25 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16 26 Si 0.91 22.02 29.54 -169.99 -5.02 17.00 16 27 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 29 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 30 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 31 H 0.12 0.65 6.70 -52.48 -0.35 0.30 16 32 H 0.13 0.49 8.06 -52.49 -0.42 0.06 16 33 H 0.13 0.34 8.06 -52.49 -0.42 -0.09 16 34 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 35 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 36 H 0.10 1.22 8.11 -51.93 -0.42 0.80 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 1.17 6.86 -51.93 -0.36 0.82 16 39 H 0.08 1.39 8.13 -51.93 -0.42 0.97 16 40 H 0.08 1.09 8.13 -51.93 -0.42 0.66 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 44 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 45 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 LS Contribution 391.62 15.07 5.90 5.90 Total: -1.00 -37.61 391.62 -8.57 -46.18 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -6.08 Total: -3.80 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -2.53 Total: 3.03 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: 0.47 Total: -33.44 kcal Atomic # 8 Polarization: -33.56 SS G_CDS: -1.30 Total: -34.86 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.61 -8.57 -46.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815184329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.314 kcal (2) G-P(sol) polarization free energy of solvation -37.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds