Wall clock time and date at job start Wed Apr 1 2020 03:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33609 * 1 3 3 C 1.47608 * 126.11035 * 2 1 4 4 C 1.38938 * 133.93778 * 359.93189 * 3 2 1 5 5 C 1.38115 * 119.75116 * 180.02562 * 4 3 2 6 6 C 1.38600 * 120.49011 * 0.04156 * 5 4 3 7 7 C 1.37987 * 120.56446 * 359.95766 * 6 5 4 8 8 C 1.39292 * 119.76898 * 0.02562 * 7 6 5 9 9 C 1.47128 * 133.63929 * 179.97438 * 8 7 6 10 10 O 1.21646 * 125.44267 * 0.02562 * 9 8 7 11 11 N 1.34507 * 109.11311 * 179.78465 * 9 8 7 12 12 C 1.46497 * 124.94003 * 180.22578 * 11 9 8 13 13 H 1.09006 * 109.47225 * 180.18529 * 12 11 9 14 14 C 1.52999 * 109.47735 * 300.18833 * 12 11 9 15 15 C 1.50703 * 109.47034 * 60.18677 * 12 11 9 16 16 O 1.20827 * 120.00025 * 0.02562 * 15 12 11 17 17 O 1.34230 * 120.00186 * 179.97438 * 15 12 11 18 18 C 1.45198 * 117.00083 * 180.02562 * 17 15 12 19 19 C 1.52998 * 109.46955 * 180.02562 * 18 17 15 20 20 O 1.42902 * 109.47557 * 64.99675 * 19 18 17 21 21 C 1.42898 * 114.00573 * 179.97438 * 20 19 18 22 22 C 1.50697 * 109.47535 * 180.02562 * 21 20 19 23 23 H 1.08006 * 119.99397 * 0.02562 * 22 21 20 24 24 C 1.37872 * 120.00382 * 180.02562 * 22 21 20 25 25 N 1.31514 * 119.99834 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00213 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47317 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47274 * 119.99926 * 26 24 22 29 29 H 1.48496 * 109.47231 * 239.99823 * 26 24 22 30 30 H 1.08002 * 120.00523 * 0.03611 * 1 2 3 31 31 H 1.08005 * 119.99708 * 179.75282 * 1 2 3 32 32 H 1.07993 * 120.12479 * 359.97438 * 4 3 2 33 33 H 1.07995 * 119.75329 * 180.02562 * 5 4 3 34 34 H 1.07998 * 119.71339 * 179.97438 * 6 5 4 35 35 H 1.07991 * 120.11449 * 179.97438 * 7 6 5 36 36 H 1.08998 * 109.47826 * 179.97438 * 14 12 11 37 37 H 1.08998 * 109.46817 * 300.00360 * 14 12 11 38 38 H 1.09006 * 109.47013 * 59.99566 * 14 12 11 39 39 H 1.09006 * 109.46866 * 299.99443 * 18 17 15 40 40 H 1.08990 * 109.47485 * 59.99912 * 18 17 15 41 41 H 1.09001 * 109.47056 * 184.99794 * 19 18 17 42 42 H 1.08996 * 109.47379 * 304.99914 * 19 18 17 43 43 H 1.08996 * 109.47116 * 300.00491 * 21 20 19 44 44 H 1.08999 * 109.46848 * 59.99934 * 21 20 19 45 45 H 0.97006 * 120.00084 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3361 0.0000 0.0000 3 6 2.2060 1.1925 0.0000 4 6 1.9659 2.5610 -0.0012 5 6 3.0285 3.4433 -0.0013 6 6 4.3325 2.9736 -0.0011 7 6 4.5901 1.6180 0.0000 8 6 3.5313 0.7129 0.0005 9 6 3.4514 -0.7562 0.0013 10 8 4.4027 -1.5144 0.0020 11 7 2.1585 -1.1270 0.0063 12 6 1.6830 -2.5126 0.0132 13 1 0.5930 -2.5228 0.0129 14 6 2.2001 -3.2357 -1.2321 15 6 2.1915 -3.2120 1.2475 16 8 2.8799 -2.6142 2.0403 17 8 1.8787 -4.4988 1.4667 18 6 2.4027 -5.1078 2.6762 19 6 1.9447 -6.5656 2.7528 20 8 2.5246 -7.3044 1.6757 21 6 2.1592 -8.6857 1.6552 22 6 2.8240 -9.3639 0.4852 23 1 3.4622 -8.7968 -0.1763 24 6 2.6177 -10.7083 0.2592 25 7 1.8409 -11.3989 1.0650 26 14 3.4424 -11.5491 -1.1907 27 1 4.2594 -10.5593 -1.9378 28 1 4.3178 -12.6421 -0.6966 29 1 2.4052 -12.1142 -2.0907 30 1 -0.5401 0.9353 -0.0006 31 1 -0.5400 -0.9354 -0.0040 32 1 0.9522 2.9334 -0.0028 33 1 2.8419 4.5070 -0.0018 34 1 5.1540 3.6747 -0.0017 35 1 5.6089 1.2601 -0.0002 36 1 1.8467 -4.2668 -1.2267 37 1 1.8324 -2.7298 -2.1248 38 1 3.2901 -3.2255 -1.2317 39 1 3.4920 -5.0700 2.6595 40 1 2.0336 -4.5645 3.5459 41 1 2.2628 -6.9970 3.7020 42 1 0.8581 -6.6094 2.6798 43 1 2.4820 -9.1608 2.5815 44 1 1.0769 -8.7738 1.5597 45 1 1.6954 -12.3446 0.9058 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815184329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:51 Heat of formation + Delta-G solvation = -117.807768 kcal Electronic energy + Delta-G solvation = -29376.334703 eV Core-core repulsion = 25131.565028 eV Total energy + Delta-G solvation = -4244.769675 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.91094 -41.51298 -39.32795 -38.77846 -38.04379 -37.47390 -35.00705 -34.79591 -32.71497 -31.80642 -31.02022 -30.74622 -29.06642 -26.52303 -25.01510 -24.59007 -24.45715 -23.42495 -22.72060 -21.90335 -20.24828 -19.17084 -18.75030 -18.30084 -18.12548 -17.88501 -17.40308 -17.15923 -16.85046 -16.54610 -16.43690 -16.12874 -15.62238 -15.47578 -15.24564 -15.00198 -14.76876 -14.64183 -14.35464 -13.88520 -13.84074 -13.69991 -13.57057 -13.38938 -13.23977 -13.13532 -12.93257 -12.75147 -12.65569 -12.56923 -12.48097 -12.10765 -12.05221 -11.85987 -11.63121 -11.29574 -11.15137 -10.92794 -10.30658 -10.23500 -10.01788 -9.09350 -8.34670 -6.46462 -0.64287 0.13410 0.88359 1.05692 1.23223 1.38439 1.39484 1.54393 1.65784 2.05806 2.32561 2.79962 2.99056 3.00076 3.01451 3.24653 3.38056 3.63787 3.67413 3.80511 3.83895 4.02267 4.13296 4.21491 4.30744 4.31300 4.40860 4.42891 4.50180 4.60360 4.64119 4.68082 4.81248 4.82589 4.93966 4.98378 5.05345 5.15008 5.17692 5.22089 5.34409 5.40662 5.52248 5.66055 5.83499 5.92161 5.92830 6.43371 6.48921 6.77119 6.78640 7.24974 8.77606 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.020717 B = 0.002054 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.221046 B =13628.554550 C =13949.203874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.090 3.910 3 C -0.048 4.048 4 C -0.089 4.089 5 C -0.076 4.076 6 C -0.122 4.122 7 C -0.062 4.062 8 C -0.199 4.199 9 C 0.552 3.448 10 O -0.547 6.547 11 N -0.552 5.552 12 C 0.166 3.834 13 H 0.177 0.823 14 C -0.158 4.158 15 C 0.447 3.553 16 O -0.527 6.527 17 O -0.346 6.346 18 C 0.078 3.922 19 C 0.057 3.943 20 O -0.411 6.411 21 C 0.208 3.792 22 C -0.550 4.550 23 H 0.057 0.943 24 C 0.008 3.992 25 N -0.927 5.927 26 Si 0.981 3.019 27 H -0.269 1.269 28 H -0.271 1.271 29 H -0.268 1.268 30 H 0.166 0.834 31 H 0.130 0.870 32 H 0.172 0.828 33 H 0.176 0.824 34 H 0.162 0.838 35 H 0.124 0.876 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.043 0.957 39 H 0.060 0.940 40 H 0.110 0.890 41 H 0.082 0.918 42 H 0.065 0.935 43 H -0.008 1.008 44 H -0.006 1.006 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.739 34.547 -3.048 35.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.002 4.002 3 C -0.050 4.050 4 C -0.106 4.106 5 C -0.093 4.093 6 C -0.139 4.139 7 C -0.081 4.081 8 C -0.202 4.202 9 C 0.345 3.655 10 O -0.425 6.425 11 N -0.276 5.276 12 C 0.062 3.938 13 H 0.194 0.806 14 C -0.216 4.216 15 C 0.289 3.711 16 O -0.416 6.416 17 O -0.261 6.261 18 C 0.005 3.995 19 C -0.020 4.020 20 O -0.331 6.331 21 C 0.133 3.867 22 C -0.587 4.587 23 H 0.075 0.925 24 C -0.191 4.191 25 N -0.566 5.566 26 Si 0.804 3.196 27 H -0.193 1.193 28 H -0.196 1.196 29 H -0.193 1.193 30 H 0.184 0.816 31 H 0.148 0.852 32 H 0.189 0.811 33 H 0.193 0.807 34 H 0.180 0.820 35 H 0.142 0.858 36 H 0.114 0.886 37 H 0.123 0.877 38 H 0.062 0.938 39 H 0.078 0.922 40 H 0.128 0.872 41 H 0.100 0.900 42 H 0.083 0.917 43 H 0.009 0.991 44 H 0.012 0.988 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.945 34.036 -2.874 34.671 hybrid contribution 0.821 -1.464 0.192 1.689 sum -5.124 32.572 -2.682 33.082 Atomic orbital electron populations 1.24421 0.90139 1.06420 0.97945 1.18811 0.92199 0.82915 1.06270 1.19653 0.91496 0.94178 0.99674 1.21060 1.02231 0.88559 0.98791 1.21835 0.91224 1.01916 0.94356 1.21583 0.99260 0.93667 0.99407 1.20970 0.97838 0.93435 0.95813 1.20572 0.97180 0.92369 1.10117 1.18791 0.82411 0.89513 0.74773 1.90786 1.40883 1.60928 1.49919 1.45494 1.06738 1.05073 1.70307 1.20760 1.03354 0.78906 0.90761 0.80578 1.22112 1.01767 1.02192 0.95493 1.24447 0.77692 0.80930 0.88040 1.90661 1.36173 1.67119 1.47661 1.86551 1.69165 1.25575 1.44827 1.23217 0.99215 0.91871 0.85194 1.22623 0.98592 0.89123 0.91655 1.87880 1.72269 1.23313 1.49637 1.19886 0.94023 0.76766 0.96007 1.21388 1.30196 0.94860 1.12282 0.92508 1.25916 0.95708 0.97298 1.00137 1.70057 1.38212 1.09177 1.39170 0.85162 0.78383 0.78023 0.77995 1.19303 1.19609 1.19260 0.81618 0.85175 0.81075 0.80653 0.81999 0.85835 0.88649 0.87738 0.93788 0.92166 0.87219 0.89980 0.91713 0.99053 0.98797 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 14.31 66.77 0.96 -0.36 16 2 C 0.09 1.61 6.73 39.34 0.26 1.87 16 3 C -0.05 -0.86 6.28 -19.97 -0.13 -0.99 16 4 C -0.09 -0.81 10.09 22.41 0.23 -0.59 16 5 C -0.08 -0.53 10.03 22.33 0.22 -0.31 16 6 C -0.12 -1.36 10.02 22.30 0.22 -1.13 16 7 C -0.06 -1.24 10.09 22.46 0.23 -1.01 16 8 C -0.20 -5.04 6.36 -20.03 -0.13 -5.17 16 9 C 0.55 18.19 6.67 86.62 0.58 18.76 16 10 O -0.55 -22.91 15.63 8.73 0.14 -22.78 16 11 N -0.55 -14.35 2.44 -613.16 -1.50 -15.85 16 12 C 0.17 4.15 3.30 44.25 0.15 4.29 16 13 H 0.18 2.70 6.49 -2.38 -0.02 2.68 16 14 C -0.16 -4.03 9.14 71.98 0.66 -3.37 16 15 C 0.45 15.05 6.99 71.24 0.50 15.55 16 16 O -0.53 -21.06 14.69 26.82 0.39 -20.66 16 17 O -0.35 -12.17 10.09 -48.77 -0.49 -12.66 16 18 C 0.08 2.68 5.84 71.98 0.42 3.10 16 19 C 0.06 2.13 6.33 71.98 0.46 2.59 16 20 O -0.41 -20.84 10.30 -145.57 -1.50 -22.34 16 21 C 0.21 11.82 5.69 71.23 0.41 12.22 16 22 C -0.55 -33.50 9.43 25.60 0.24 -33.26 16 23 H 0.06 3.49 7.81 -2.91 -0.02 3.47 16 24 C 0.01 0.48 5.46 84.65 0.46 0.94 16 25 N -0.93 -55.75 13.29 21.45 0.28 -55.47 16 26 Si 0.98 45.22 29.54 68.60 2.03 47.24 16 27 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 28 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 29 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 30 H 0.17 0.29 8.06 -2.91 -0.02 0.27 16 31 H 0.13 0.81 6.70 -2.91 -0.02 0.79 16 32 H 0.17 0.23 8.06 -2.91 -0.02 0.20 16 33 H 0.18 -0.15 8.06 -2.91 -0.02 -0.18 16 34 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 35 H 0.12 2.55 8.06 -2.92 -0.02 2.53 16 36 H 0.09 2.45 8.11 -2.39 -0.02 2.43 16 37 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.04 1.44 6.86 -2.38 -0.02 1.42 16 39 H 0.06 2.26 8.13 -2.38 -0.02 2.24 16 40 H 0.11 3.03 8.13 -2.39 -0.02 3.01 16 41 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 42 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 43 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 44 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 45 H 0.27 15.06 8.31 -92.70 -0.77 14.29 16 Total: -1.00 -89.08 391.62 6.09 -82.99 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: 1.00 Total: 6.38 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: 5.73 Total: 13.15 kcal Atomic # 7 Polarization: -70.11 SS G_CDS: -1.21 Total: -71.32 kcal Atomic # 8 Polarization: -76.98 SS G_CDS: -1.46 Total: -78.44 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -89.08 6.09 -82.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815184329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.815 kcal (2) G-P(sol) polarization free energy of solvation -89.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds