Wall clock time and date at job start Wed Apr 1 2020 03:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34228 * 117.00402 * 2 1 4 4 O 1.20827 * 119.99454 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00244 * 179.97438 * 3 2 1 6 6 H 1.09000 * 115.49185 * 325.38539 * 5 3 2 7 7 C 1.53002 * 117.44023 * 110.75723 * 5 3 2 8 8 H 1.09002 * 119.54276 * 355.88860 * 7 5 3 9 9 C 1.53989 * 118.30996 * 199.13522 * 7 5 3 10 10 N 1.48147 * 104.81763 * 273.09216 * 9 7 5 11 11 C 1.34775 * 127.83578 * 219.53706 * 10 9 7 12 12 O 1.21281 * 120.00268 * 179.68135 * 11 10 9 13 13 C 1.50707 * 120.00043 * 359.67386 * 11 10 9 14 14 C 1.50693 * 109.46922 * 180.02562 * 13 11 10 15 15 C 1.38327 * 119.97031 * 270.25605 * 14 13 11 16 16 C 1.38273 * 120.13863 * 180.25878 * 15 14 13 17 17 C 1.38120 * 120.07060 * 359.49027 * 16 15 14 18 18 C 1.38854 * 119.93206 * 0.25420 * 17 16 15 19 19 O 1.35751 * 120.07482 * 180.02562 * 18 17 16 20 20 C 1.34834 * 116.99708 * 354.46943 * 19 18 17 21 21 H 1.08003 * 119.99800 * 5.05492 * 20 19 18 22 22 C 1.38650 * 119.99974 * 185.05630 * 20 19 18 23 23 N 1.31557 * 120.00237 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99852 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47147 * 89.99613 * 24 22 20 26 26 H 1.48498 * 109.47090 * 209.99899 * 24 22 20 27 27 H 1.48498 * 109.47306 * 329.99882 * 24 22 20 28 28 C 1.38085 * 119.96576 * 90.00437 * 14 13 11 29 29 C 1.48142 * 104.32308 * 39.27315 * 10 9 7 30 30 C 1.52996 * 117.44208 * 179.97438 * 5 3 2 31 31 H 1.08995 * 120.26200 * 3.83403 * 30 5 3 32 32 H 1.08999 * 109.47373 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47228 * 300.00654 * 1 2 3 34 34 H 1.09001 * 109.46323 * 60.00334 * 1 2 3 35 35 H 1.08998 * 110.35558 * 154.21411 * 9 7 5 36 36 H 1.09005 * 110.26228 * 31.91587 * 9 7 5 37 37 H 1.09002 * 109.46878 * 60.00571 * 13 11 10 38 38 H 1.09001 * 109.47247 * 300.00667 * 13 11 10 39 39 H 1.08003 * 119.92553 * 0.02562 * 15 14 13 40 40 H 1.07998 * 119.96577 * 179.76472 * 16 15 14 41 41 H 1.08003 * 120.03675 * 180.23345 * 17 16 15 42 42 H 0.96997 * 120.00250 * 179.97438 * 23 22 20 43 43 H 1.08004 * 120.03131 * 359.97438 * 28 14 13 44 44 H 1.09002 * 110.41045 * 79.46351 * 29 10 9 45 45 H 1.09003 * 110.40393 * 201.77448 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 4.0770 0.4908 0.5598 7 6 4.2459 1.7920 -1.2690 8 1 3.6417 2.0204 -2.1470 9 6 5.7378 1.4745 -1.4800 10 7 6.4594 2.5653 -0.7840 11 6 7.5762 3.2048 -1.1844 12 8 8.0472 4.0885 -0.5003 13 6 8.2398 2.8216 -2.4821 14 6 9.4595 3.6805 -2.6952 15 6 9.3484 4.8835 -3.3689 16 6 10.4662 5.6718 -3.5711 17 6 11.6959 5.2650 -3.0915 18 6 11.8099 4.0604 -2.4103 19 8 13.0170 3.6580 -1.9372 20 6 14.0846 4.4155 -2.2605 21 1 13.9466 5.3407 -2.8003 22 6 15.3594 4.0066 -1.9001 23 7 15.5275 2.8798 -1.2422 24 14 16.8385 5.0557 -2.3487 25 1 17.1089 6.0235 -1.2553 26 1 18.0243 4.1828 -2.5416 27 1 16.5582 5.7948 -3.6058 28 6 10.6861 3.2682 -2.2133 29 6 5.6712 2.7980 0.4486 30 6 4.1995 2.6676 -0.0001 31 1 3.5717 3.5564 0.0621 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 -0.3632 0.5138 -0.8901 35 1 5.9793 1.4766 -2.5429 36 1 5.9853 0.5107 -1.0350 37 1 7.5412 2.9712 -3.3054 38 1 8.5362 1.7734 -2.4430 39 1 8.3870 5.2058 -3.7410 40 1 10.3769 6.6087 -4.1008 41 1 12.5680 5.8829 -3.2465 42 1 16.4194 2.5936 -0.9903 43 1 10.7715 2.3310 -1.6835 44 1 5.9082 2.0441 1.1993 45 1 5.8641 3.7968 0.8400 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816969717.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:48 Heat of formation + Delta-G solvation = -74.725647 kcal Electronic energy + Delta-G solvation = -28486.336612 eV Core-core repulsion = 24243.435117 eV Total energy + Delta-G solvation = -4242.901494 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.44258 -40.27894 -39.14234 -38.31219 -36.90472 -36.37321 -33.97317 -32.36167 -31.95780 -29.38944 -28.95849 -28.83264 -27.53314 -26.10978 -25.15468 -23.56644 -21.63590 -21.09824 -20.99747 -20.54028 -19.41761 -18.40293 -17.57219 -17.49958 -16.95734 -16.90364 -16.83760 -15.84321 -15.44236 -15.04513 -14.78571 -14.65320 -14.33914 -14.08563 -13.81805 -13.65340 -13.51029 -13.40521 -13.19981 -12.95800 -12.64081 -12.59361 -12.44027 -12.37099 -12.00705 -11.81754 -11.50755 -11.32324 -11.23300 -11.03301 -10.86524 -10.81888 -10.77250 -10.69886 -10.57762 -10.40884 -9.75310 -9.28935 -8.95961 -8.78962 -8.02467 -7.16909 -6.39424 -3.98405 1.50242 2.00603 2.12346 2.43717 2.69727 2.83334 2.94246 3.16803 3.16969 3.21853 3.92781 3.99207 4.01090 4.06664 4.41985 4.47416 4.56049 4.60837 4.64581 4.69023 4.85599 4.98606 5.01278 5.04166 5.14410 5.20206 5.20555 5.26743 5.45824 5.50480 5.51093 5.64417 5.69488 5.78902 5.84316 5.93602 5.98878 6.22534 6.38542 6.70322 6.96394 7.12119 7.22067 7.30726 7.36418 7.41885 7.49074 7.87490 8.05687 8.19956 9.06400 9.77428 10.78869 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.030820 B = 0.001702 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.297552 B =16449.550233 C =16846.346573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.353 6.353 3 C 0.495 3.505 4 O -0.502 6.502 5 C -0.130 4.130 6 H 0.140 0.860 7 C -0.144 4.144 8 H 0.131 0.869 9 C 0.128 3.872 10 N -0.632 5.632 11 C 0.539 3.461 12 O -0.512 6.512 13 C -0.088 4.088 14 C -0.036 4.036 15 C -0.195 4.195 16 C -0.075 4.075 17 C -0.230 4.230 18 C 0.154 3.846 19 O -0.180 6.180 20 C -0.391 4.391 21 H 0.091 0.909 22 C 0.039 3.961 23 N -0.864 5.864 24 Si 0.940 3.060 25 H -0.274 1.274 26 H -0.278 1.278 27 H -0.268 1.268 28 C -0.173 4.173 29 C 0.131 3.869 30 C -0.135 4.135 31 H 0.136 0.864 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.126 0.874 42 H 0.269 0.731 43 H 0.114 0.886 44 H 0.078 0.922 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.316 -7.116 -0.639 28.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.270 6.270 3 C 0.337 3.663 4 O -0.389 6.389 5 C -0.149 4.149 6 H 0.158 0.842 7 C -0.164 4.164 8 H 0.148 0.852 9 C 0.005 3.995 10 N -0.369 5.369 11 C 0.328 3.672 12 O -0.385 6.385 13 C -0.127 4.127 14 C -0.036 4.036 15 C -0.214 4.214 16 C -0.093 4.093 17 C -0.249 4.249 18 C 0.101 3.899 19 O -0.084 6.084 20 C -0.467 4.467 21 H 0.109 0.891 22 C -0.165 4.165 23 N -0.500 5.500 24 Si 0.765 3.235 25 H -0.199 1.199 26 H -0.203 1.203 27 H -0.192 1.192 28 C -0.192 4.192 29 C 0.008 3.992 30 C -0.155 4.155 31 H 0.154 0.846 32 H 0.122 0.878 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.113 0.887 36 H 0.101 0.899 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.144 0.856 42 H 0.079 0.921 43 H 0.132 0.868 44 H 0.096 0.904 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -26.852 -6.580 -0.073 27.646 hybrid contribution 0.264 0.535 -0.188 0.626 sum -26.588 -6.045 -0.261 27.268 Atomic orbital electron populations 1.23328 0.75776 1.03993 1.02740 1.86490 1.23715 1.32884 1.83871 1.22440 0.90154 0.81418 0.72243 1.90696 1.66810 1.36453 1.44983 1.21791 0.88321 1.00570 1.04205 0.84232 1.23645 0.97016 1.03468 0.92253 0.85163 1.21771 0.87494 0.90877 0.99320 1.49349 1.26838 1.37815 1.22906 1.20491 0.78255 0.80852 0.87595 1.90785 1.62085 1.29850 1.55753 1.20570 0.96274 1.01230 0.94661 1.18658 0.91913 0.94834 0.98241 1.20345 0.97708 0.96288 1.07103 1.20677 0.92451 0.98108 0.98091 1.21180 0.98353 0.98866 1.06505 1.19273 0.87256 0.92019 0.91365 1.83977 1.11594 1.49242 1.63541 1.21317 0.83142 1.04253 1.37984 0.89131 1.25268 0.97954 0.96769 0.96535 1.70040 1.23258 1.20551 1.36120 0.85722 0.79795 0.78916 0.79043 1.19928 1.20306 1.19230 1.19941 0.90728 1.01286 1.07289 1.21740 0.86077 1.03814 0.87539 1.23793 0.97451 0.93538 1.00675 0.84581 0.87784 0.91711 0.91727 0.88674 0.89925 0.88353 0.88155 0.87954 0.87464 0.85603 0.92122 0.86814 0.90386 0.88601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.17 10.56 101.05 1.07 1.23 16 2 O -0.35 -2.57 10.57 -39.25 -0.41 -2.98 16 3 C 0.49 4.08 7.74 36.00 0.28 4.36 16 4 O -0.50 -5.52 16.11 -18.75 -0.30 -5.82 16 5 C -0.13 -0.83 5.85 -91.77 -0.54 -1.36 16 6 H 0.14 0.65 8.14 -51.93 -0.42 0.23 16 7 C -0.14 -0.91 6.81 -89.45 -0.61 -1.52 16 8 H 0.13 0.75 8.14 -51.93 -0.42 0.33 16 9 C 0.13 0.84 6.70 -2.62 -0.02 0.82 16 10 N -0.63 -6.66 3.32 -169.54 -0.56 -7.22 16 11 C 0.54 7.87 7.91 -10.98 -0.09 7.78 16 12 O -0.51 -10.08 16.30 5.56 0.09 -9.99 16 13 C -0.09 -1.16 4.81 -29.04 -0.14 -1.30 16 14 C -0.04 -0.66 4.37 -104.65 -0.46 -1.12 16 15 C -0.20 -3.56 9.70 -39.54 -0.38 -3.94 16 16 C -0.07 -1.46 10.04 -39.61 -0.40 -1.85 16 17 C -0.23 -5.23 9.17 -39.40 -0.36 -5.59 16 18 C 0.15 3.89 6.65 -39.11 -0.26 3.63 16 19 O -0.18 -5.29 9.76 0.04 0.00 -5.29 16 20 C -0.39 -11.19 9.49 30.88 0.29 -10.90 16 21 H 0.09 2.41 5.20 -52.48 -0.27 2.13 16 22 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 23 N -0.86 -25.76 13.67 55.48 0.76 -25.00 16 24 Si 0.94 20.91 29.55 -169.99 -5.02 15.89 16 25 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 26 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 27 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 28 C -0.17 -3.81 9.65 -39.39 -0.38 -4.19 16 29 C 0.13 1.20 6.86 -2.40 -0.02 1.18 16 30 C -0.14 -1.03 6.56 -89.23 -0.59 -1.61 16 31 H 0.14 1.14 7.84 -51.93 -0.41 0.74 16 32 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.06 0.31 8.13 -51.93 -0.42 -0.12 16 34 H 0.06 0.30 8.13 -51.93 -0.42 -0.12 16 35 H 0.09 0.49 7.30 -51.93 -0.38 0.11 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.10 1.00 7.89 -51.93 -0.41 0.59 16 38 H 0.10 1.12 8.08 -51.93 -0.42 0.70 16 39 H 0.10 1.58 8.06 -52.48 -0.42 1.16 16 40 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 41 H 0.13 2.85 5.64 -52.48 -0.30 2.55 16 42 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.11 2.42 8.06 -52.48 -0.42 2.00 16 44 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.10 1.03 7.88 -51.93 -0.41 0.62 16 LS Contribution 388.23 15.07 5.85 5.85 Total: -1.00 -36.97 388.23 -8.25 -45.22 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -5.96 Total: 2.74 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -2.69 Total: -13.39 kcal Atomic # 7 Polarization: -32.42 SS G_CDS: 0.20 Total: -32.22 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.63 Total: -24.08 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.97 -8.25 -45.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816969717.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.508 kcal (2) G-P(sol) polarization free energy of solvation -36.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds